MS022843 (gene) Bitter gourd (TR) v1

Overview


Name	MS022843
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BnaC09g29120D protein
Location	scaffold29: 171297 .. 171689 (-)
RNA-Seq Expression	MS022843
Synteny	MS022843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTAC

mRNA sequence

ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTAC

Coding sequence (CDS)

ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTAC

Protein sequence

MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY

Homology

[Close]

BLAST of MS022843 vs. NCBI nr
Match: KAB1210637.1 (hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical protein CJ030_MR1G029169 [Morella rubra])

HSP 1 Score: 279.6 bits (714), Expect = 1.3e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. NCBI nr
Match: PLY71578.1 (hypothetical protein LSAT_1X88180 [Lactuca sativa] >PLY72081.1 hypothetical protein LSAT_9X121741 [Lactuca sativa] >PLY94770.1 hypothetical protein LSAT_2X97121 [Lactuca sativa] >PWA75058.1 hypothetical protein CTI12_AA247900 [Artemisia annua])

HSP 1 Score: 276.9 bits (707), Expect = 8.7e-71
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGEC IELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECPIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. NCBI nr
Match: KAG6618057.1 (hypothetical protein I3842_Q128200 [Carya illinoinensis])

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIE IGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIEWIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYR LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRGLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. NCBI nr
Match: CAB4269449.1 (unnamed protein product [Prunus armeniaca] >CAB4284031.1 unnamed protein product [Prunus armeniaca] >CAB4314312.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RS PAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. NCBI nr
Match: GFQ08762.1 (hypothetical protein PHJA_003020200 [Phtheirospermum japonicum] >GFQ08765.1 hypothetical protein PHJA_003020500 [Phtheirospermum japonicum])

HSP 1 Score: 274.2 bits (700), Expect = 5.7e-70
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RS+PAGAENPSLSRLCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSMPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. ExPASy TrEMBL
Match: A0A2N9HQ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. ExPASy TrEMBL
Match: A0A6A1VFM0 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G029169 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. ExPASy TrEMBL
Match: A0A7N2N6W3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.5e-71
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MK+DGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKMDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. ExPASy TrEMBL
Match: A0A2J6KAH1 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X88180 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.2e-71
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGEC IELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECPIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

[Close]

BLAST of MS022843 vs. ExPASy TrEMBL
Match: A0A2U1NNL2 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA247900 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.2e-71
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGEC IELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECPIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRGASFPVLSY 132
           TRGASFPVLSY
Sbjct: 121 TRGASFPVLSY 131

The following BLAST results are available for this feature:

BLAST of MS022843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1210637.1	1.3e-71	100.00	hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical...	[more]
PLY71578.1	8.7e-71	99.24	hypothetical protein LSAT_1X88180 [Lactuca sativa] >PLY72081.1 hypothetical prot...	[more]
KAG6618057.1	4.3e-70	98.47	hypothetical protein I3842_Q128200 [Carya illinoinensis]	[more]
CAB4269449.1	4.3e-70	98.47	unnamed protein product [Prunus armeniaca] >CAB4284031.1 unnamed protein product...	[more]
GFQ08762.1	5.7e-70	97.71	hypothetical protein PHJA_003020200 [Phtheirospermum japonicum] >GFQ08765.1 hypo...	[more]

BLAST of MS022843 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HQ72	6.5e-72	100.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1	[more]
A0A6A1VFM0	6.5e-72	100.00	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G029169 PE=4 SV=1	[more]
A0A7N2N6W3	1.5e-71	99.24	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2J6KAH1	4.2e-71	99.24	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X88180 PE=4 SV=1	[more]
A0A2U1NNL2	4.2e-71	99.24	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA247900 PE=4 SV=1	[more]

BLAST of MS022843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022843.1	MS022843.1	mRNA