MS022726 (gene) Bitter gourd (TR) v1

Overview
NameMS022726
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy1-copia retrotransposon protein
Locationscaffold41: 960222 .. 960347 (+)
RNA-Seq ExpressionMS022726
SyntenyMS022726
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTTGATAAAGACAGCAAAACGATTCATGGGCAGCTCCTCAACCACATGAATGACTCCCTCTTTGATTTGTTCGTATCCCAAAAATCTGCAAAGACTATTTGGGACACCATAGAGTCTAAATAT

mRNA sequence

AAGTTTGATAAAGACAGCAAAACGATTCATGGGCAGCTCCTCAACCACATGAATGACTCCCTCTTTGATTTGTTCGTATCCCAAAAATCTGCAAAGACTATTTGGGACACCATAGAGTCTAAATAT

Coding sequence (CDS)

AAGTTTGATAAAGACAGCAAAACGATTCATGGGCAGCTCCTCAACCACATGAATGACTCCCTCTTTGATTTGTTCGTATCCCAAAAATCTGCAAAGACTATTTGGGACACCATAGAGTCTAAATAT

Protein sequence

KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
Homology
BLAST of MS022726 vs. NCBI nr
Match: XP_022158735.1 (uncharacterized protein LOC111025197 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF+KD+KT+ G LLNHMNDSLFDLFV QKSAK IWDT+ES+Y
Sbjct: 101 KFEKDNKTVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRY 142

BLAST of MS022726 vs. NCBI nr
Match: XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
          KF+KD+KTI G LLNHMND LFDLFV QKSAK IWDT+ES+Y
Sbjct: 9  KFEKDNKTIRGHLLNHMNDFLFDLFVVQKSAKVIWDTLESRY 50

BLAST of MS022726 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 8.9e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF KD+KTIH  LLNHMN+SLFD FV++KSAK +WDT+ES+Y
Sbjct: 95  KFKKDNKTIHEHLLNHMNNSLFDFFVTKKSAKIMWDTLESRY 136

BLAST of MS022726 vs. NCBI nr
Match: KAA0067906.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
          K+ KD+KTIHG LLNHM+D +FDLFV+QKSAK IW T++S+Y
Sbjct: 53 KYAKDNKTIHGHLLNHMSDPMFDLFVAQKSAKDIWSTLKSRY 94

BLAST of MS022726 vs. NCBI nr
Match: PWA86048.1 (ribosomal protein L2, plastid [Artemisia annua])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF+KD+KT  G LLNHM++SLFDLF++QKSAK IW+T+E KY
Sbjct: 75  KFEKDNKTARGHLLNHMSNSLFDLFINQKSAKIIWETLEKKY 116

BLAST of MS022726 vs. ExPASy TrEMBL
Match: A0A6J1DWN1 (uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025197 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF+KD+KT+ G LLNHMNDSLFDLFV QKSAK IWDT+ES+Y
Sbjct: 101 KFEKDNKTVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRY 142

BLAST of MS022726 vs. ExPASy TrEMBL
Match: A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
          KF+KD+KTI G LLNHMND LFDLFV QKSAK IWDT+ES+Y
Sbjct: 9  KFEKDNKTIRGHLLNHMNDFLFDLFVVQKSAKVIWDTLESRY 50

BLAST of MS022726 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF KD+KTIH  LLNHMN+SLFD FV++KSAK +WDT+ES+Y
Sbjct: 95  KFKKDNKTIHEHLLNHMNNSLFDFFVTKKSAKIMWDTLESRY 136

BLAST of MS022726 vs. ExPASy TrEMBL
Match: A0A2U1PJW3 (Ribosomal protein L2, plastid OS=Artemisia annua OX=35608 GN=CTI12_AA142330 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-09
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1   KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
           KF+KD+KT  G LLNHM++SLFDLF++QKSAK IW+T+E KY
Sbjct: 75  KFEKDNKTARGHLLNHMSNSLFDLFINQKSAKIIWETLEKKY 116

BLAST of MS022726 vs. ExPASy TrEMBL
Match: A0A5A7VMW4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-09
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY 43
          K+ KD+KTIHG LLNHM+D +FDLFV+QKSAK IW T++S+Y
Sbjct: 53 KYAKDNKTIHGHLLNHMSDPMFDLFVAQKSAKDIWSTLKSRY 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158735.11.2e-1078.57uncharacterized protein LOC111025197 [Momordica charantia][more]
XP_022153695.14.7e-1078.57uncharacterized protein LOC111021147 [Momordica charantia][more]
XP_022150382.18.9e-0971.43uncharacterized protein LOC111018559 [Momordica charantia][more]
KAA0067906.11.5e-0869.05ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
PWA86048.11.5e-0869.05ribosomal protein L2, plastid [Artemisia annua][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWN16.0e-1178.57uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DHJ42.3e-1078.57uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1DAK74.3e-0971.43uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A2U1PJW37.3e-0969.05Ribosomal protein L2, plastid OS=Artemisia annua OX=35608 GN=CTI12_AA142330 PE=3... [more]
A0A5A7VMW47.3e-0969.05Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022726.1MS022726.1mRNA