MS022721 (gene) Bitter gourd (TR) v1

Overview
NameMS022721
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold41: 853805 .. 854058 (+)
RNA-Seq ExpressionMS022721
SyntenyMS022721
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGACGGTAGTGGCCCTCGGCAACATGGTTGGGAAGTTTGAAAAAATAGAAACGGATGATGATGGAAGATGCTGGGGCCAAACTTTACGAGTGAGAGTTCAAATAGATGTGAGTAAAGCTTTACGCGGAGGGGTGATGATAAAGATTGGCGCCATGCTGATGAGCGCTGGATACCTATAACGTATGAAAAATTGCCAGATTTCTGCTATGGGTGTGGCAAACTTGGTCATGTGATAAAGGATTGTGACCTG

mRNA sequence

AGGAAGACGGTAGTGGCCCTCGGCAACATGGTTGGGAAGTTTGAAAAAATAGAAACGGATGATGATGGAAGATGCTGGGGCCAAACTTTACGAGTGAGAGTTCAAATAGATGTGAGTAAAGCTTTACGCGGAGGGGTGATGATAAAGATTGGCGCCATGCTGGAGCGCTGGATACCTATAACGTATGAAAAATTGCCAGATTTCTGCTATGGGTGTGGCAAACTTGGTCATGTGATAAAGGATTGTGACCTG

Coding sequence (CDS)

AGGAAGACGGTAGTGGCCCTCGGCAACATGGTTGGGAAGTTTGAAAAAATAGAAACGGATGATGATGGAAGATGCTGGGGCCAAACTTTACGAGTGAGAGTTCAAATAGATGTGAGTAAAGCTTTACGCGGAGGGGTGATGATAAAGATTGGCGCCATGCTGGAGCGCTGGATACCTATAACGTATGAAAAATTGCCAGATTTCTGCTATGGGTGTGGCAAACTTGGTCATGTGATAAAGGATTGTGACCTG

Protein sequence

RKTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAMLERWIPITYEKLPDFCYGCGKLGHVIKDCDL
Homology
BLAST of MS022721 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5   VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYE 64
           + LGN +G F  ++ ++ G  WG +LR+RV ID++K LR G+ I I G M   WIPI YE
Sbjct: 146 IRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYE 205

Query: 65  KLPDFCYGCGKLGHVIKDCD 84
           +LPDFCY CG +GH   DCD
Sbjct: 206 RLPDFCYFCGVIGHSSHDCD 225

BLAST of MS022721 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKL 66
           LGN +G FE +E++ +  CWG  LRVRV+ DV K L  G+ + + G M   WIPI YE+L
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDF Y CG+L H++KDC
Sbjct: 209 PDFRYHCGRLDHILKDC 225

BLAST of MS022721 vs. NCBI nr
Match: XP_042958115.1 (uncharacterized protein LOC122293643 [Carya illinoinensis])

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-15
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 2   KTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAMLERWIPIT 61
           K V  +GN +G  E+I+ + D   WG+ +++R+ +DV+K L  G  I +G     W+  T
Sbjct: 119 KVVSKIGNSIGVVEEIDVEKDEVAWGEFIKIRILLDVTKPLLRGKCINLGNHGSCWVRFT 178

Query: 62  YEKLPDFCYGCGKLGHVIKDCDL 85
           YE+LP FCYGCG+LGH  KDC +
Sbjct: 179 YERLPTFCYGCGRLGHSHKDCSI 201

BLAST of MS022721 vs. NCBI nr
Match: XP_024018029.1 (uncharacterized protein LOC112090594 [Morus notabilis])

HSP 1 Score: 90.1 bits (222), Expect = 9.7e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKL 66
           +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKL
Sbjct: 144 VGDIIGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKL 203

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDFCYGCGK GH  ++C
Sbjct: 204 PDFCYGCGKFGHGTREC 220

BLAST of MS022721 vs. NCBI nr
Match: EXB66629.1 (hypothetical protein L484_024925 [Morus notabilis])

HSP 1 Score: 90.1 bits (222), Expect = 9.7e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKL 66
           +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKL
Sbjct: 144 VGDIIGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKL 203

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDFCYGCGK GH  ++C
Sbjct: 204 PDFCYGCGKFGHGTREC 220

BLAST of MS022721 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5   VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYE 64
           + LGN +G F  ++ ++ G  WG +LR+RV ID++K LR G+ I I G M   WIPI YE
Sbjct: 146 IRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYE 205

Query: 65  KLPDFCYGCGKLGHVIKDCD 84
           +LPDFCY CG +GH   DCD
Sbjct: 206 RLPDFCYFCGVIGHSSHDCD 225

BLAST of MS022721 vs. ExPASy TrEMBL
Match: A0A0A0LNB5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1   RKTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAML-ERWIP 60
           RK VVAL N +  FE++E  +  R +G+ L+VR +IDV ++L     IK+GAM  E+ IP
Sbjct: 31  RKYVVALTNSIDSFEEVEESELRRTYGELLKVREKIDVQQSLNHETNIKLGAMAKEKCIP 90

Query: 61  ITYEKLPDFCYGCGKLGHVIKDCDL 85
           +TYEKL DFCY CG LGHV+++C++
Sbjct: 91  VTYEKLSDFCYNCGILGHVLQECEV 115

BLAST of MS022721 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKL 66
           LGN +G FE +E++ +  CWG  LRVRV+ DV K L  G+ + + G M   WIPI YE+L
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDF Y CG+L H++KDC
Sbjct: 209 PDFRYHCGRLDHILKDC 225

BLAST of MS022721 vs. ExPASy TrEMBL
Match: W9RRS1 (CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024909 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.7e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKL 66
           +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKL
Sbjct: 144 VGDIIGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKL 203

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDFCYGCGK GH  ++C
Sbjct: 204 PDFCYGCGKFGHGTREC 220

BLAST of MS022721 vs. ExPASy TrEMBL
Match: W9RBJ0 (CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024925 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.7e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 7   LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKL 66
           +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKL
Sbjct: 144 VGDIIGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKL 203

Query: 67  PDFCYGCGKLGHVIKDC 83
           PDFCYGCGK GH  ++C
Sbjct: 204 PDFCYGCGKFGHGTREC 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.13.0e-1651.25uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.11.1e-1551.95uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_042958115.15.7e-1543.37uncharacterized protein LOC122293643 [Carya illinoinensis][more]
XP_024018029.19.7e-1548.05uncharacterized protein LOC112090594 [Morus notabilis][more]
EXB66629.19.7e-1548.05hypothetical protein L484_024925 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.5e-1651.25uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0LNB51.9e-1650.59CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 P... [more]
A0A6J1BSZ15.5e-1651.95uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
W9RRS14.7e-1548.05CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024909 ... [more]
W9RBJ04.7e-1548.05CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024925 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 36..83
e-value: 5.3E-14
score: 51.6
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 3..83
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 3..83
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 69..82
score: 9.932926
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 66..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022721.1MS022721.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding