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MS022338 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCTCCGCCGCCAGGGCCATTTTCCGATCCTGCTCCGCCTCAGGTTTCAAGGCAACCTCTCGTCTGGCCACCGGAGCCAGAGCAGCTCCAGCTCGTTCACCATTTCGCATTTCGACTAAACCAAGTTTCTCTCAATGTGCTGTAAGGTAATTTGCTCAAAAGCATCGGATTTCGACTCTTCCGAGTATACAAGCATCGACTGAGGATCGAGAATAGGGCACGCACTTGTGCCAACATTGAATTGGAAACTTCTGTTGAAATGAGTAGAAAAATAAGCTAATTGTTCTCGTTTTTTATGTTTTTTTTTCTTTTTCCGATGAAGGATTCCTGTGGAAATGAGCTTCGGTGTGGAGTCGATGCTTCCGTTCCATTCGGCTACTTCTTCGGCATTGATGACTTCAATGCTTTCTGTCTCTCCACGTAGTTATGGTTGGCTTTCAGAA ATGGCTTCCTCCGCCGCCAGGGCCATTTTCCGATCCTGCTCCGCCTCAGGTTTCAAGGCAACCTCTCGTCTGGCCACCGGAGCCAGAGCAGCTCCAGCTCGTTCACCATTTCGCATTTCGACTAAACCAAGTTTCTCTCAATGTGCTGTAAGGATTCCTGTGGAAATGAGCTTCGGTGTGGAGTCGATGCTTCCGTTCCATTCGGCTACTTCTTCGGCATTGATGACTTCAATGCTTTCTGTCTCTCCACGTAGTTATGGTTGGCTTTCAGAA ATGGCTTCCTCCGCCGCCAGGGCCATTTTCCGATCCTGCTCCGCCTCAGGTTTCAAGGCAACCTCTCGTCTGGCCACCGGAGCCAGAGCAGCTCCAGCTCGTTCACCATTTCGCATTTCGACTAAACCAAGTTTCTCTCAATGTGCTGTAAGGATTCCTGTGGAAATGAGCTTCGGTGTGGAGTCGATGCTTCCGTTCCATTCGGCTACTTCTTCGGCATTGATGACTTCAATGCTTTCTGTCTCTCCACGTAGTTATGGTTGGCTTTCAGAA MASSAARAIFRSCSASGFKATSRLATGARAAPARSPFRISTKPSFSQCAVRIPVEMSFGVESMLPFHSATSSALMTSMLSVSPRSYGWLSE Homology
BLAST of MS022338 vs. NCBI nr
Match: XP_022136012.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Momordica charantia]) HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. NCBI nr
Match: XP_022136010.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Momordica charantia]) HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. NCBI nr
Match: XP_022136011.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Momordica charantia]) HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 4.7e-23 Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 0
BLAST of MS022338 vs. NCBI nr
Match: TYK15251.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 4.7e-23 Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 0
BLAST of MS022338 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 3.3e-11 Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0
BLAST of MS022338 vs. ExPASy TrEMBL
Match: A0A6J1C2N3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007816 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. ExPASy TrEMBL
Match: A0A6J1C4D4 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007816 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. ExPASy TrEMBL
Match: A0A6J1C2B4 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007816 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS022338 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23 Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 0
BLAST of MS022338 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23 Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 0
BLAST of MS022338 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 68.9 bits (167), Expect = 2.3e-12 Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0
BLAST of MS022338 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 68.9 bits (167), Expect = 2.3e-12 Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0
BLAST of MS022338 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 68.9 bits (167), Expect = 2.3e-12 Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0
BLAST of MS022338 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.8 bits (146), Expect = 6.4e-10 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of MS022338 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.8 bits (146), Expect = 6.4e-10 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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