MS021258 (gene) Bitter gourd (TR) v1

Overview
NameMS021258
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCLAVATA3/ESR-RELATED 3
Locationscaffold358: 532387 .. 532647 (-)
RNA-Seq ExpressionMS021258
SyntenyMS021258
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTAATGGCTTGTTTGAAGTTCTTATTGTGGCTTGTGCTGATATTGCTCTTGTGTTCCTCCATTTCTGAAAGTCGCTTGCTTTCTCCTTCATCTTCTTCTTCTTTTTCTTCTGCTGTGAATTATAAGAGAAATGAAAACCAGCTATTTGTGGAGAATGTCAGAGAAATCTTGAAGGTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCAGGAGGCCCTGATCCACGCCATCAT

mRNA sequence

ATCTTAATGGCTTGTTTGAAGTTCTTATTGTGGCTTGTGCTGATATTGCTCTTGTGTTCCTCCATTTCTGAAAGTCGCTTGCTTTCTCCTTCATCTTCTTCTTCTTTTTCTTCTGCTGTGAATTATAAGAGAAATGAAAACCAGCTATTTGTGGAGAATGTCAGAGAAATCTTGAAGGTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCAGGAGGCCCTGATCCACGCCATCAT

Coding sequence (CDS)

ATCTTAATGGCTTGTTTGAAGTTCTTATTGTGGCTTGTGCTGATATTGCTCTTGTGTTCCTCCATTTCTGAAAGTCGCTTGCTTTCTCCTTCATCTTCTTCTTCTTTTTCTTCTGCTGTGAATTATAAGAGAAATGAAAACCAGCTATTTGTGGAGAATGTCAGAGAAATCTTGAAGGTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCAGGAGGCCCTGATCCACGCCATCAT

Protein sequence

ILMACLKFLLWLVLILLLCSSISESRLLSPSSSSSFSSAVNYKRNENQLFVENVREILKVIIEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
BLAST of MS021258 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 9  LLW-LVLILLLCSSISESRLL-SPSSSSSFSSAVNYKRNENQLFVENVREILKVIIEEKE 68
          L W LVLILLLCSSISESRLL SPS S S SS+ N K   N+LFV+N  E+LK IIEEKE
Sbjct: 10 LFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKK---NELFVKNAEEMLKFIIEEKE 69

Query: 69 KLGRHFVSKRLSPGGPDPRHH 88
          KLGRHFVSKRLSPGGPDPRHH
Sbjct: 70 KLGRHFVSKRLSPGGPDPRHH 87

BLAST of MS021258 vs. NCBI nr
Match: XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 22  ISESRLLSPSSSSSFSSAVNYKRNENQLFVENVREILKVIIEEKEKLGRHFVSKRLSPGG 81
           +S + LL          +  Y  +E ++ +EN +E+LK  ++ +E LG+ F SKRLSPGG
Sbjct: 39  VSRTSLLKQKIIERHFESQQYSNDEGRVLMENAKEMLKDGVKRQEILGKFFDSKRLSPGG 98

Query: 82  PDPRHH 88
           PDPRHH
Sbjct: 99  PDPRHH 104

BLAST of MS021258 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 9  LLW-LVLILLLCSSISESRLL-SPSSSSSFSSAVNYKRNENQLFVENVREILKVIIEEKE 68
          L W LVLILLLCSSISESRLL SPS S S SS+ N K   N+LFV+N  E+LK IIEEKE
Sbjct: 10 LFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKK---NELFVKNAEEMLKFIIEEKE 69

Query: 69 KLGRHFVSKRLSPGGPDPRHH 88
          KLGRHFVSKRLSPGGPDPRHH
Sbjct: 70 KLGRHFVSKRLSPGGPDPRHH 87

BLAST of MS021258 vs. TAIR 10
Match: AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 3  MACLKFLLWLVLILLL-CSSISESRLLSPSSSSSFSSAVNYKRNENQLFVENVREILKVI 62
          MA LK  + LVL+L+L  +S+ E R L   +   FS +   K+   +LF E ++E+    
Sbjct: 1  MASLKLWVCLVLLLVLELTSVHECRPL--VAEERFSGSSRLKKIRRELF-ERLKEMKGRS 60

Query: 63 IEEKEKLGRHFVSKRLSPGGPDPRHH 88
            E+  LG    SKRLSPGGPDPRHH
Sbjct: 61 EGEETILGNTLDSKRLSPGGPDPRHH 83

BLAST of MS021258 vs. TAIR 10
Match: AT1G73165.1 (CLAVATA3/ESR-RELATED 1 )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 38/85 (44.71%), Postives = 47/85 (55.29%), Query Frame = 0

Query: 3  MACLKFLLWLVLILLLCSSISESRLLSPSSSSSFSSAVNYKRNENQLFVENVREILKVII 62
          MA LKFLL L LI   C S+S     S +S   F +A   KR    +  E   E+LK  +
Sbjct: 1  MANLKFLLCLFLI---CVSLSR----SSASRPMFPNADGIKRGRMMIEAE---EVLKASM 60

Query: 63 EEKEKLGRHFVSKRLSPGGPDPRHH 88
          E+  + G +  S RLSPGGPDPRHH
Sbjct: 61 EKLMERGFN-ESMRLSPGGPDPRHH 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55081.12.6e-1877.78hypothetical protein Csa_012463 [Cucumis sativus][more]
XP_031267366.11.6e-0442.42CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4M11.2e-1877.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G06225.12.9e-0443.02CLAVATA3/ESR-RELATED 3 [more]
AT1G73165.16.5e-0444.71CLAVATA3/ESR-RELATED 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039616CLAVATA3/ESR (CLE)-related protein 1/3/4PANTHERPTHR33869CLAVATA3/ESR (CLE)-RELATED PROTEIN 3coord: 3..87
NoneNo IPR availablePANTHERPTHR33869:SF13SUBFAMILY NOT NAMEDcoord: 3..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021258.1MS021258.1mRNA