MS019358 (gene) Bitter gourd (TR) v1

Overview
NameMS019358
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionflowering time control protein FCA isoform X2
Locationscaffold611: 588607 .. 589544 (-)
RNA-Seq ExpressionMS019358
SyntenyMS019358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCACAAGAGTCACCTGGCTTAGGTGGGCAGCTGCCTGTATCTCAGGCTATGGCCCAGCTGGGCGCCTCATCTTCAGCAGCTACACAGGCTCCTTTGAGTGTGAACTTACAATCCCATGCTGTTTCAGCTGCTAATCAACAGCAGCTTCCAGCTCCAGTTCAACCACATCAGAATTCACCTTCTCAGTTAGCTCATATGCTGTCGCAACAAAAACAAACTCTGCAGGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGCTGATACAACCATCAAACCAAAGTTCAGCACTGCATCAGAGTTCCCAGGCTATTAAGCAACAGGTAATCAGTACTAAGCTAGAGGATATCTCTACACTAATAGAATATGTTTGGATTTGTTGAGGTACATGATACCATAAAACATTTTGAATATCTTTTGTTTTACGTGCCCTTGCAGTCGCACTGGGTGGGGGTTGTTTCACAGTCAACTGCCAGTGCCACGTCTTCTGTCACTTCAGATACACATTCATCTACAGTTGTTCCTCCTGCAACAATAAATACCCAAGTTGTAGCTCCTTTGAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTACAAATATTATTATAATAGTGTAACTGGTGAGAGCAAGGTGAGAATTTCTTGAAGCTTGCGTTTTTACGAGGCTATTTCTGCGATTTGTGTGGTTAATGTTCTCATGTGTAAACCTGCAGTGGGAGAGACCTGAAGAGCTTGCGGCAATTGAACAACAGCAAAAGCCACAGCCACCAGTACTGCAGCCTCATAACCAGCCACATCCTCAACTACTATCTGCCCAGCAACTCTCTCAAACTCCGCAAGCCCAGATTCAAGCCCAATTCCAGACACAGATGCCTCACCCTCAGCCGCTACAGCAACCTTCATTCCCTTCA

mRNA sequence

CCTTCACAAGAGTCACCTGGCTTAGGTGGGCAGCTGCCTGTATCTCAGGCTATGGCCCAGCTGGGCGCCTCATCTTCAGCAGCTACACAGGCTCCTTTGAGTGTGAACTTACAATCCCATGCTGTTTCAGCTGCTAATCAACAGCAGCTTCCAGCTCCAGTTCAACCACATCAGAATTCACCTTCTCAGTTAGCTCATATGCTGTCGCAACAAAAACAAACTCTGCAGGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGCTGATACAACCATCAAACCAAAGTTCAGCACTGCATCAGAGTTCCCAGGCTATTAAGCAACAGTCGCACTGGGTGGGGGTTGTTTCACAGTCAACTGCCAGTGCCACGTCTTCTGTCACTTCAGATACACATTCATCTACAGTTGTTCCTCCTGCAACAATAAATACCCAAGTTGTAGCTCCTTTGAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTACAAATATTATTATAATAGTGTAACTGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTGCGGCAATTGAACAACAGCAAAAGCCACAGCCACCAGTACTGCAGCCTCATAACCAGCCACATCCTCAACTACTATCTGCCCAGCAACTCTCTCAAACTCCGCAAGCCCAGATTCAAGCCCAATTCCAGACACAGATGCCTCACCCTCAGCCGCTACAGCAACCTTCATTCCCTTCA

Coding sequence (CDS)

CCTTCACAAGAGTCACCTGGCTTAGGTGGGCAGCTGCCTGTATCTCAGGCTATGGCCCAGCTGGGCGCCTCATCTTCAGCAGCTACACAGGCTCCTTTGAGTGTGAACTTACAATCCCATGCTGTTTCAGCTGCTAATCAACAGCAGCTTCCAGCTCCAGTTCAACCACATCAGAATTCACCTTCTCAGTTAGCTCATATGCTGTCGCAACAAAAACAAACTCTGCAGGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGCTGATACAACCATCAAACCAAAGTTCAGCACTGCATCAGAGTTCCCAGGCTATTAAGCAACAGTCGCACTGGGTGGGGGTTGTTTCACAGTCAACTGCCAGTGCCACGTCTTCTGTCACTTCAGATACACATTCATCTACAGTTGTTCCTCCTGCAACAATAAATACCCAAGTTGTAGCTCCTTTGAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTACAAATATTATTATAATAGTGTAACTGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTGCGGCAATTGAACAACAGCAAAAGCCACAGCCACCAGTACTGCAGCCTCATAACCAGCCACATCCTCAACTACTATCTGCCCAGCAACTCTCTCAAACTCCGCAAGCCCAGATTCAAGCCCAATTCCAGACACAGATGCCTCACCCTCAGCCGCTACAGCAACCTTCATTCCCTTCA

Protein sequence

PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGESKWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPLQQPSFPS
Homology
BLAST of MS019358 vs. NCBI nr
Match: XP_022138516.1 (flowering time control protein FCA isoform X3 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 6.0e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 401 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 460

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 461 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 520

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 521 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 580

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 581 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 640

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 641 QQPSFPS 647

BLAST of MS019358 vs. NCBI nr
Match: XP_022138515.1 (flowering time control protein FCA isoform X2 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 6.0e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 402 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 461

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 462 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 521

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 522 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 581

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 582 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 641

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 642 QQPSFPS 648

BLAST of MS019358 vs. NCBI nr
Match: XP_022138513.1 (flowering time control protein FCA isoform X1 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 6.0e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 406 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 465

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 466 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 525

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 526 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 585

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 586 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 645

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 646 QQPSFPS 652

BLAST of MS019358 vs. NCBI nr
Match: XP_038907167.1 (LOW QUALITY PROTEIN: flowering time control protein FCA [Benincasa hispida])

HSP 1 Score: 354.4 bits (908), Expect = 8.1e-94
Identity = 206/251 (82.07%), Postives = 219/251 (87.25%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQ SPGLG QLPVSQAM Q GASS+AAT  PLS+NLQSHA +A NQQQLP P+QP QNS
Sbjct: 398 PSQGSPGLGAQLPVSQAMVQQGASSAAATHTPLSMNLQSHA-AAPNQQQLPTPIQPSQNS 457

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQ----QS 120
           PSQLAHMLSQQKQTLQA FQSSQQAFSQLQQQLQLIQPSNQSS L  SSQ IKQ    QS
Sbjct: 458 PSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQLIQPSNQSSTLQLSSQTIKQQMPLQS 517

Query: 121 HWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSV 180
           HW GVV Q+ ASA +S TSD H+ST VPP  INTQVVAP+KCNWTEHTSPDGYKYYYNSV
Sbjct: 518 HWGGVVPQTAASA-ASATSDAHTST-VPPVAINTQVVAPVKCNWTEHTSPDGYKYYYNSV 577

Query: 181 TGESKWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPH 240
           TGESKWE+PEEL+AIEQQQK  PPVLQPHNQPHPQ+LS+QQLSQTPQAQ+Q QFQTQMPH
Sbjct: 578 TGESKWEKPEELSAIEQQQK--PPVLQPHNQPHPQVLSSQQLSQTPQAQLQIQFQTQMPH 637

Query: 241 PQPLQQPSFPS 248
           PQPLQQPSF S
Sbjct: 638 PQPLQQPSFHS 643

BLAST of MS019358 vs. NCBI nr
Match: XP_004148821.1 (flowering time control protein FCA isoform X2 [Cucumis sativus] >KGN47451.1 hypothetical protein Csa_021780 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 6.4e-91
Identity = 201/249 (80.72%), Postives = 217/249 (87.15%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQL VSQ+M   GASS+AAT  PLS+NLQSHA +A +QQQLP P+QP QNS
Sbjct: 398 PSQESPGLGGQLAVSQSM---GASSAAATHTPLSMNLQSHA-AAPSQQQLPTPIQPPQNS 457

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQA FQSSQQAFSQLQQQLQLIQP NQSS L  SSQ IKQQ HW G
Sbjct: 458 PSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQLIQPPNQSSTLQPSSQTIKQQPHWAG 517

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VV+ + ASA +S TSD H+ST VPPA INTQVVAP+KCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 518 VVTHTAASA-ASATSDAHTST-VPPAAINTQVVAPVKCNWTEHTSPDGYKYYYNSVTGES 577

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQT--QMPHPQ 240
           KWERPEEL+ IEQQQ+ +PP+LQPHNQPHPQLLS QQLSQTPQAQ+Q QFQT  QMPHPQ
Sbjct: 578 KWERPEELSVIEQQQQ-KPPILQPHNQPHPQLLSTQQLSQTPQAQLQTQFQTQSQMPHPQ 637

Query: 241 PLQQPSFPS 248
           PLQQPSF S
Sbjct: 638 PLQQPSFHS 639

BLAST of MS019358 vs. ExPASy Swiss-Prot
Match: O04425 (Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 SV=3)

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-34
Identity = 119/256 (46.48%), Postives = 147/256 (57.42%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLP----APVQP 60
           P Q       QLP SQ   Q   S + A Q PL++NL+   VS+A  Q  P     P+Q 
Sbjct: 440 PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQK 499

Query: 61  HQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQS 120
            Q+ PS+LA +LSQQ Q+LQA+FQSSQQA SQLQQQ+Q +Q  NQ+  L Q+ +A KQQ 
Sbjct: 500 MQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ- 559

Query: 121 HWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSV 180
            W G    S     +S T  T  S V   A   +Q V  +KC WTEHTSPDG+KYYYN +
Sbjct: 560 -WAG----SAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGL 619

Query: 181 TGESKWERPEELAAIE-----QQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQ 240
           TGESKWE+PEE+   E     QQQ  + P +Q   Q   QL   Q L Q PQ Q+Q Q+Q
Sbjct: 620 TGESKWEKPEEMIVFEREQQKQQQHQEKPTIQ---QSQTQL---QPLQQQPQ-QVQQQYQ 677

Query: 241 TQMPHPQPLQQPSFPS 248
            Q      LQQP + S
Sbjct: 680 GQQ-----LQQPFYSS 677

BLAST of MS019358 vs. ExPASy Swiss-Prot
Match: Q6K271 (Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-28
Identity = 110/256 (42.97%), Postives = 138/256 (53.91%), Query Frame = 0

Query: 1   PSQESPG------LGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPV 60
           P    PG      L GQLPVSQ + Q  AS S A Q P +V+    A+    QQ LP+ V
Sbjct: 458 PQSMGPGSFGQNRLSGQLPVSQPLMQQNASVS-AVQVPSAVSNSMQAI--PGQQHLPSNV 517

Query: 61  ------QPHQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQS 120
                 QP Q  PSQ   +L QQ+  LQ+S+QSSQQA  QLQQQLQL+Q   QS+  HQ 
Sbjct: 518 APQMLQQPVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQ- 577

Query: 121 SQAIKQQSHWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDG 180
                Q +    V S +  +  + + S+ ++   +P     T    PL CNWTEHTSP+G
Sbjct: 578 -----QPTQGQPVQSSNPGAPNAIIPSNINT---IPQQA--TSPAVPLTCNWTEHTSPEG 637

Query: 181 YKYYYNSVTGESKWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQA 240
           +KYYYNS+T ESKW++PEE    EQQQ+ Q        Q H Q L+ QQL   PQAQ   
Sbjct: 638 FKYYYNSITRESKWDKPEEYVLYEQQQQQQQQQKLLLLQQHQQKLAMQQLQSPPQAQTHP 697

Query: 241 QFQ--TQMPHPQPLQQ 243
             Q   Q+P  Q  QQ
Sbjct: 698 AMQPVQQIPQAQQGQQ 699

BLAST of MS019358 vs. ExPASy Swiss-Prot
Match: B8BCZ8 (Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA PE=3 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-27
Identity = 110/256 (42.97%), Postives = 138/256 (53.91%), Query Frame = 0

Query: 1   PSQESPG------LGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPV 60
           P    PG      L GQLPVSQ + Q  A S  A QAP +V+    A+    QQ LP+ V
Sbjct: 458 PQSMGPGSFGQNMLSGQLPVSQPLMQQNA-SVGAVQAPSAVSNSMQAI--PGQQHLPSNV 517

Query: 61  ------QPHQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQS 120
                 QP Q  PSQ   +L QQ+  LQ+S+QSSQQA  QLQQQLQL+Q   QS+  HQ 
Sbjct: 518 APQMLQQPVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQ- 577

Query: 121 SQAIKQQSHWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDG 180
                Q +    V S +  +  + + S+ ++   +P     T    PL CNWTEHTSP+G
Sbjct: 578 -----QPTQGQPVQSSNPGAPNAIIPSNINT---IPQQA--TSPAVPLTCNWTEHTSPEG 637

Query: 181 YKYYYNSVTGESKWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQA 240
           +KYYYNS+T ESKW++PEE    EQQQ+ Q        Q H Q L+ QQL   PQAQ   
Sbjct: 638 FKYYYNSITRESKWDKPEEYVLYEQQQQQQQQQKLLLLQQHQQKLAMQQLQSPPQAQTHP 697

Query: 241 QFQ--TQMPHPQPLQQ 243
             Q   Q+P  Q  QQ
Sbjct: 698 AMQPVQQIPQAQQGQQ 699

BLAST of MS019358 vs. ExPASy TrEMBL
Match: A0A6J1C9N0 (flowering time control protein FCA isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009664 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.9e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 402 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 461

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 462 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 521

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 522 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 581

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 582 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 641

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 642 QQPSFPS 648

BLAST of MS019358 vs. ExPASy TrEMBL
Match: A0A6J1C9Y2 (flowering time control protein FCA isoform X3 OS=Momordica charantia OX=3673 GN=LOC111009664 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.9e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 401 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 460

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 461 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 520

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 521 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 580

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 581 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 640

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 641 QQPSFPS 647

BLAST of MS019358 vs. ExPASy TrEMBL
Match: A0A6J1CD68 (flowering time control protein FCA isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009664 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.9e-121
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQLPVSQAMAQ GASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS
Sbjct: 406 PSQESPGLGGQLPVSQAMAQQGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 465

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG
Sbjct: 466 PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 525

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 526 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 585

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 240
           KWERPEELAAIEQQQKPQPPVLQPHNQPH QLLSAQQLSQTPQAQIQAQFQTQMPHPQPL
Sbjct: 586 KWERPEELAAIEQQQKPQPPVLQPHNQPHHQLLSAQQLSQTPQAQIQAQFQTQMPHPQPL 645

Query: 241 QQPSFPS 248
           QQPSFPS
Sbjct: 646 QQPSFPS 652

BLAST of MS019358 vs. ExPASy TrEMBL
Match: A0A0A0KI53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326920 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.1e-91
Identity = 201/249 (80.72%), Postives = 217/249 (87.15%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQL VSQ+M   GASS+AAT  PLS+NLQSHA +A +QQQLP P+QP QNS
Sbjct: 398 PSQESPGLGGQLAVSQSM---GASSAAATHTPLSMNLQSHA-AAPSQQQLPTPIQPPQNS 457

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQA FQSSQQAFSQLQQQLQLIQP NQSS L  SSQ IKQQ HW G
Sbjct: 458 PSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQLIQPPNQSSTLQPSSQTIKQQPHWAG 517

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           VV+ + ASA +S TSD H+ST VPPA INTQVVAP+KCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 518 VVTHTAASA-ASATSDAHTST-VPPAAINTQVVAPVKCNWTEHTSPDGYKYYYNSVTGES 577

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQT--QMPHPQ 240
           KWERPEEL+ IEQQQ+ +PP+LQPHNQPHPQLLS QQLSQTPQAQ+Q QFQT  QMPHPQ
Sbjct: 578 KWERPEELSVIEQQQQ-KPPILQPHNQPHPQLLSTQQLSQTPQAQLQTQFQTQSQMPHPQ 637

Query: 241 PLQQPSFPS 248
           PLQQPSF S
Sbjct: 638 PLQQPSFHS 639

BLAST of MS019358 vs. ExPASy TrEMBL
Match: A0A5D3BTH3 (Flowering time control protein FCA isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00470 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.2e-88
Identity = 198/249 (79.52%), Postives = 213/249 (85.54%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLPAPVQPHQNS 60
           PSQESPGLGGQL VSQ+M   GASS+AAT APLS+NLQSHA +A +QQQLP P+QP QNS
Sbjct: 505 PSQESPGLGGQLAVSQSM---GASSAAATHAPLSMNLQSHA-AAPSQQQLPTPIQPPQNS 564

Query: 61  PSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQSHWVG 120
           PSQLAHMLSQQKQTLQA FQSSQQAFSQLQQQLQ IQP NQSS L  SSQ IKQQ HW G
Sbjct: 565 PSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQQIQPPNQSSTLQPSSQPIKQQPHWAG 624

Query: 121 VVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSVTGES 180
           V   + ASATS+ TSD H+ST VPPA  NTQVVAP+KCNWTEHTSPDGYKYYYNSVTGES
Sbjct: 625 VGPHTAASATSA-TSDAHTST-VPPAARNTQVVAPVKCNWTEHTSPDGYKYYYNSVTGES 684

Query: 181 KWERPEELAAIEQQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQTQ--MPHPQ 240
           KWERPEEL+ IEQQQ+ +PP+LQPHNQPHPQLLS QQLSQTPQ Q+Q QFQTQ  MPHPQ
Sbjct: 685 KWERPEELSVIEQQQQ-KPPILQPHNQPHPQLLSTQQLSQTPQPQLQTQFQTQSPMPHPQ 744

Query: 241 PLQQPSFPS 248
           PL QPSF S
Sbjct: 745 PLLQPSFHS 746

BLAST of MS019358 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-35
Identity = 119/256 (46.48%), Postives = 147/256 (57.42%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLP----APVQP 60
           P Q       QLP SQ   Q   S + A Q PL++NL+   VS+A  Q  P     P+Q 
Sbjct: 440 PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQK 499

Query: 61  HQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQS 120
            Q+ PS+LA +LSQQ Q+LQA+FQSSQQA SQLQQQ+Q +Q  NQ+  L Q+ +A KQQ 
Sbjct: 500 MQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ- 559

Query: 121 HWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSV 180
            W G    S     +S T  T  S V   A   +Q V  +KC WTEHTSPDG+KYYYN +
Sbjct: 560 -WAG----SAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGL 619

Query: 181 TGESKWERPEELAAIE-----QQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQ 240
           TGESKWE+PEE+   E     QQQ  + P +Q   Q   QL   Q L Q PQ Q+Q Q+Q
Sbjct: 620 TGESKWEKPEEMIVFEREQQKQQQHQEKPTIQ---QSQTQL---QPLQQQPQ-QVQQQYQ 677

Query: 241 TQMPHPQPLQQPSFPS 248
            Q      LQQP + S
Sbjct: 680 GQQ-----LQQPFYSS 677

BLAST of MS019358 vs. TAIR 10
Match: AT4G16280.1 (RNA binding;abscisic acid binding )

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-35
Identity = 119/256 (46.48%), Postives = 147/256 (57.42%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLP----APVQP 60
           P Q       QLP SQ   Q   S + A Q PL++NL+   VS+A  Q  P     P+Q 
Sbjct: 198 PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQK 257

Query: 61  HQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQS 120
            Q+ PS+LA +LSQQ Q+LQA+FQSSQQA SQLQQQ+Q +Q  NQ+  L Q+ +A KQQ 
Sbjct: 258 MQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ- 317

Query: 121 HWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSV 180
            W G    S     +S T  T  S V   A   +Q V  +KC WTEHTSPDG+KYYYN +
Sbjct: 318 -WAG----SAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGL 377

Query: 181 TGESKWERPEELAAIE-----QQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQ 240
           TGESKWE+PEE+   E     QQQ  + P +Q   Q   QL   Q L Q PQ Q+Q Q+Q
Sbjct: 378 TGESKWEKPEEMIVFEREQQKQQQHQEKPTIQ---QSQTQL---QPLQQQPQ-QVQQQYQ 435

Query: 241 TQMPHPQPLQQPSFPS 248
            Q      LQQP + S
Sbjct: 438 GQQ-----LQQPFYSS 435

BLAST of MS019358 vs. TAIR 10
Match: AT4G16280.4 (RNA binding;abscisic acid binding )

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-35
Identity = 119/256 (46.48%), Postives = 147/256 (57.42%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLP----APVQP 60
           P Q       QLP SQ   Q   S + A Q PL++NL+   VS+A  Q  P     P+Q 
Sbjct: 365 PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQK 424

Query: 61  HQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQQLQLIQPSNQSSALHQSSQAIKQQS 120
            Q+ PS+LA +LSQQ Q+LQA+FQSSQQA SQLQQQ+Q +Q  NQ+  L Q+ +A KQQ 
Sbjct: 425 MQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ- 484

Query: 121 HWVGVVSQSTASATSSVTSDTHSSTVVPPATINTQVVAPLKCNWTEHTSPDGYKYYYNSV 180
            W G    S     +S T  T  S V   A   +Q V  +KC WTEHTSPDG+KYYYN +
Sbjct: 485 -WAG----SAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGL 544

Query: 181 TGESKWERPEELAAIE-----QQQKPQPPVLQPHNQPHPQLLSAQQLSQTPQAQIQAQFQ 240
           TGESKWE+PEE+   E     QQQ  + P +Q   Q   QL   Q L Q PQ Q+Q Q+Q
Sbjct: 545 TGESKWEKPEEMIVFEREQQKQQQHQEKPTIQ---QSQTQL---QPLQQQPQ-QVQQQYQ 602

Query: 241 TQMPHPQPLQQPSFPS 248
            Q      LQQP + S
Sbjct: 605 GQQ-----LQQPFYSS 602

BLAST of MS019358 vs. TAIR 10
Match: AT4G16280.3 (RNA binding;abscisic acid binding )

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09
Identity = 46/94 (48.94%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1   PSQESPGLGGQLPVSQAMAQLGASSSAATQAPLSVNLQSHAVSAANQQQLP----APVQP 60
           P Q       QLP SQ   Q   S + A Q PL++NL+   VS+A  Q  P     P+Q 
Sbjct: 440 PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQK 499

Query: 61  HQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQ 91
            Q+ PS+LA +LSQQ Q+LQA+FQSSQQA SQLQ
Sbjct: 500 MQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQ 533

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138516.16.0e-12199.19flowering time control protein FCA isoform X3 [Momordica charantia][more]
XP_022138515.16.0e-12199.19flowering time control protein FCA isoform X2 [Momordica charantia][more]
XP_022138513.16.0e-12199.19flowering time control protein FCA isoform X1 [Momordica charantia][more]
XP_038907167.18.1e-9482.07LOW QUALITY PROTEIN: flowering time control protein FCA [Benincasa hispida][more]
XP_004148821.16.4e-9180.72flowering time control protein FCA isoform X2 [Cucumis sativus] >KGN47451.1 hypo... [more]
Match NameE-valueIdentityDescription
O044255.7e-3446.48Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 S... [more]
Q6K2718.0e-2842.97Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=F... [more]
B8BCZ81.0e-2742.97Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA... [more]
Match NameE-valueIdentityDescription
A0A6J1C9N02.9e-12199.19flowering time control protein FCA isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1C9Y22.9e-12199.19flowering time control protein FCA isoform X3 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1CD682.9e-12199.19flowering time control protein FCA isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0KI533.1e-9180.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326920 PE=4 SV=1[more]
A0A5D3BTH34.2e-8879.52Flowering time control protein FCA isoform X2 OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT4G16280.24.1e-3546.48RNA binding;abscisic acid binding [more]
AT4G16280.14.1e-3546.48RNA binding;abscisic acid binding [more]
AT4G16280.44.1e-3546.48RNA binding;abscisic acid binding [more]
AT4G16280.31.7e-0948.94RNA binding;abscisic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 155..187
e-value: 2.3E-11
score: 53.8
IPR001202WW domainPFAMPF00397WWcoord: 157..185
e-value: 4.6E-10
score: 39.4
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 154..187
score: 13.456901
IPR001202WW domainCDDcd00201WWcoord: 157..187
e-value: 7.50433E-11
score: 53.6858
NoneNo IPR availableGENE3D2.20.70.10coord: 156..198
e-value: 2.0E-17
score: 64.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..247
NoneNo IPR availablePANTHERPTHR15241:SF308FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1coord: 28..247
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 28..247
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 159..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019358.1MS019358.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding