MS018640 (gene) Bitter gourd (TR) v1

Overview
NameMS018640
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Locationscaffold313: 633088 .. 633179 (-)
RNA-Seq ExpressionMS018640
SyntenyMS018640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAAAATTCAACAAGGATTTGGTTCATCTCACACGTACACGTCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTAT

mRNA sequence

AAAATAAAATTCAACAAGGATTTGGTTCATCTCACACGTACACGTCATGGGCATCCTTTTTTTATGTTATATAGACTTGTATGTAACTAT

Coding sequence (CDS)

AAAATAAAATTCAACAAGGATTTGGTTCATCTCACACGTACACGTCATGGGCATCCTTTTTTTATGTTATATAGACTTGTATGTAACTAT

Protein sequence

KIKFNKDLVHLTRTRHGHPFFMLYRLVCNY
Homology
[Close]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match: A4QK08 (DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta OX=78191 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-05
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLYR 26
           KIKFN+DLVH TRTRHGHP F+ YR
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCYR 385

[Close]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match: A0ZZ25 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-05
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLYR 26
           KIKFN+DLVH TRTRHGHP F+ YR
Sbjct: 359 KIKFNEDLVHPTRTRHGHPAFLCYR 383

[Close]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match: Q2L8Z5 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-05
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLYR 26
           KIKFN+DLVH TRTRHGHP F+ YR
Sbjct: 359 KIKFNEDLVHPTRTRHGHPAFLCYR 383

[Close]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match: Q9THV5 (DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba OX=3728 GN=rpoC2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.5e-05
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLY 25
           KIKFN+DLVH TRTRHGHP F+ Y
Sbjct: 365 KIKFNEDLVHSTRTRHGHPAFLCY 388

[Close]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match: A4QJA5 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.8e-05
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLY 25
           KIKFN+DLVH TRTRHGHP F+ Y
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCY 384

[Close]
BLAST of MS018640 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 45.8 bits (107), Expect = 7.0e-06
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1   KIKFNKDLVHLTRTRHGHPFFMLY 25
           KIKFN+DLVH TRTRHGHP F+ Y
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCY 384

The following BLAST results are available for this feature:
BLAST of MS018640 vs.
Match NameE-valueIdentityDescription
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4QK082.6e-0580.00DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta OX=78191 GN=rpoC2 P... [more]
A0ZZ252.6e-0580.00DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rp... [more]
Q2L8Z52.6e-0580.00DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC... [more]
Q9THV57.5e-0579.17DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba OX=3728 GN=rpoC2 PE=1... [more]
A4QJA59.8e-0579.17DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 G... [more]
BLAST of MS018640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MS018640 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00170.17.0e-0679.17DNA-directed RNA polymerase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018640.1MS018640.1mRNA