MS018152 (gene) Bitter gourd (TR) v1

Overview


Name	MS018152
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription initiation factor TFIID subunit 6
Location	scaffold166: 118956 .. 119150 (+)
RNA-Seq Expression	MS018152
Synteny	MS018152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCTTTTAAAAAAAAAAAAGCATTAGCAAGTTTAGCTATGGACTCCGGACTTCACCCATTGGTTCTTTATTTTACGTGCTTTATAGTTGATGAGGTTGCACATGGACTGGGTGATTTTTCCCTTCTTTTTGCTTTAATGCGTGTCGTTTGGAGCCTTCTTCAGAATCCTCACACTCACATAGAACCTTATGTG

mRNA sequence

AGTTCTTTTAAAAAAAAAAAAGCATTAGCAAGTTTAGCTATGGACTCCGGACTTCACCCATTGGTTCTTTATTTTACGTGCTTTATAGTTGATGAGGTTGCACATGGACTGGGTGATTTTTCCCTTCTTTTTGCTTTAATGCGTGTCGTTTGGAGCCTTCTTCAGAATCCTCACACTCACATAGAACCTTATGTG

Coding sequence (CDS)

AGTTCTTTTAAAAAAAAAAAAGCATTAGCAAGTTTAGCTATGGACTCCGGACTTCACCCATTGGTTCTTTATTTTACGTGCTTTATAGTTGATGAGGTTGCACATGGACTGGGTGATTTTTCCCTTCTTTTTGCTTTAATGCGTGTCGTTTGGAGCCTTCTTCAGAATCCTCACACTCACATAGAACCTTATGTG

Protein sequence

SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

Homology

[Close]

BLAST of MS018152 vs. NCBI nr
Match: XP_038888295.1 (transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida] >XP_038888296.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 143 SSVLFKKALASLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 202

Query: 61  IEPYV 66
           IEPY+
Sbjct: 203 IEPYL 207

[Close]

BLAST of MS018152 vs. NCBI nr
Match: XP_038888294.1 (transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSVLFKKALASLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. NCBI nr
Match: XP_022135619.1 (transcription initiation factor TFIID subunit 6 [Momordica charantia] >XP_022135620.1 transcription initiation factor TFIID subunit 6 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Sbjct: 195 KKALASLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. NCBI nr
Match: XP_004140111.2 (transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN47943.1 hypothetical protein Csa_003962 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSILFKKALVSLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. NCBI nr
Match: XP_008449395.1 (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016900758.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >KAA0057367.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa] >TYK30056.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSILFKKALVSLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy Swiss-Prot
Match: Q9MAU3 (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Sbjct: 195 KEALVSLASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy Swiss-Prot
Match: F4HVA6 (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702 GN=TAF6B PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-13
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Sbjct: 205 RQALASLEIDPGLHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPYL 264

[Close]

BLAST of MS018152 vs. ExPASy Swiss-Prot
Match: O74462 (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf6 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 8   ALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 66
           AL+SL  D GLH L+ YF  F+ D V   LG+  +L  LM + W+LL NP+  +EPYV
Sbjct: 219 ALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYV 276

[Close]

BLAST of MS018152 vs. ExPASy Swiss-Prot
Match: P53040 (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-08
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   KKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPY 64
           K+ AL SL  DSGLH LV YF  FI +++   L D  LL  ++ +++SLL N    ++PY
Sbjct: 248 KQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLDPY 307

Query: 65  V 66
           +
Sbjct: 308 I 308

[Close]

BLAST of MS018152 vs. ExPASy TrEMBL
Match: A0A6J1C1Y6 (transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 GN=LOC111007529 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Sbjct: 195 KKALASLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy TrEMBL
Match: A0A1S4DXQ6 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103491293 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSILFKKALVSLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy TrEMBL
Match: A0A5A7URU3 (Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00270 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSILFKKALVSLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy TrEMBL
Match: A0A0A0KEI5 (TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G418910 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTH 60
           SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH H
Sbjct: 190 SSILFKKALVSLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIH 249

Query: 61  IEPYV 66
           IEPY+
Sbjct: 250 IEPYL 254

[Close]

BLAST of MS018152 vs. ExPASy TrEMBL
Match: A0A1S3C124 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103495654 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-21
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           KKAL SLA DSGLHPLV YFTC+I DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Sbjct: 195 KKALVSLATDSGLHPLVPYFTCYIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. TAIR 10
Match: AT1G04950.1 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-19
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Sbjct: 195 KEALVSLASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. TAIR 10
Match: AT1G04950.2 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-19
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Sbjct: 195 KEALVSLASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. TAIR 10
Match: AT1G04950.3 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-19
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Sbjct: 195 KEALVSLASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYL 254

[Close]

BLAST of MS018152 vs. TAIR 10
Match: AT1G54360.1 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Sbjct: 182 RQALASLEIDPGLHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPYL 241

[Close]

BLAST of MS018152 vs. TAIR 10
Match: AT1G54360.2 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV 65
           ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Sbjct: 205 RQALASLEIDPGLHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPYL 264

The following BLAST results are available for this feature:

BLAST of MS018152 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888295.1	1.4e-21	84.62	transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispi...	[more]
XP_038888294.1	1.4e-21	84.62	transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispi...	[more]
XP_022135619.1	2.4e-21	88.33	transcription initiation factor TFIID subunit 6 [Momordica charantia] >XP_022135...	[more]
XP_004140111.2	3.1e-21	83.08	transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN47943.1 hy...	[more]
XP_008449395.1	3.1e-21	83.08	PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >...	[more]

BLAST of MS018152 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAU3	9.8e-18	73.33	Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 ...	[more]
F4HVA6	5.6e-13	55.00	Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702...	[more]
O74462	1.1e-08	48.28	Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (st...	[more]
P53040	5.4e-08	42.62	Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (str...	[more]

BLAST of MS018152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1Y6	1.2e-21	88.33	transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 G...	[more]
A0A1S4DXQ6	1.5e-21	83.08	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7URU3	1.5e-21	83.08	Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa...	[more]
A0A0A0KEI5	1.5e-21	83.08	TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G418910 PE=3 SV...	[more]
A0A1S3C124	7.6e-21	85.00	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MS018152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04950.1	7.0e-19	73.33	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.2	7.0e-19	73.33	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.3	7.0e-19	73.33	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G54360.1	4.0e-14	55.00	TBP-ASSOCIATED FACTOR 6B	[more]
AT1G54360.2	4.0e-14	55.00	TBP-ASSOCIATED FACTOR 6B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.25.40.770		coord: 1..65 e-value: 1.5E-18 score: 69.1
None	No IPR available	PANTHER	PTHR10221:SF13	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 6..65
None	No IPR available	CDD	cd08050	TAF6C	coord: 4..65 e-value: 3.66824E-22 score: 82.3057
IPR037796	Transcription initiation factor TFIID subunit 6	PANTHER	PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018152.1	MS018152.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0046695	SLIK (SAGA-like) complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity