MS016786 (gene) Bitter gourd (TR) v1

Overview


Name	MS016786
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Homeodomain-like superfamily protein
Location	scaffold9_1: 12979 .. 13975 (+)
RNA-Seq Expression	MS016786
Synteny	MS016786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCAATATACGATGATGGAATTGAAGGACATCATTCCGCCGGCACCGCCGCTGTTACTGCCGGACCTCTCGTTGCAAATTAGTCCGCCGTCGGATTCCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCACGGCTTTTTACCAAAACCCATCTGGATTTAGGGCCCAATAGTGGCGCCGGCCGCCGTGATCTCCACCGTCAAAATCAAATCTTTGGGCGTGCCACCTTCAAGAGAGCTCCCAAAATGGCGTTTGGGGTTAGGAGAAATATTAGAGCTCCGAGAATGAGATGGACCACTACTCTCCATGCCCATTTCGTCCACGCCGTTCAGCTCCTCGGCGGCCATGAAAGTAGTACAATAATTACACAATTTATATCCTTTTTTTTTTATTTTGAAAATCCAATACGAGACCATGCAAATACAATAATTAATTAAAAAGGGATCATGAACTCTTCTTTTTTTTTTTTTTTAATAATTTTGTTTATCGTTAATTAGTTTTTGATGTGGCAGGGGCAACGCCAAAATCTGTGTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAAAGCCATTTGCAGGTAATTTTAATCCTAATTTTAGTCTTAATTTTATTTTCAGACATAAGAAAGTGAGGACAAAAGAGCATCGAGAGTGTAATCTTTGATTGTTGACTTCTTTTTCTTTTTCTTCCTTTTGTTTTCTCTTTAGCCTTAAATTTTTTTTTTTGTTGTTCATGCAGATGTATAGAACGGTGAAAAGCACTGACAAATCTACTGGTAATTAATTACAATTTTTAAATTATTTTTTACCCCCTCTTTTCAACACTCTAATTTTGAGAGATTTTTGATGATCTGAAAATGACCCACAATTTAAATTTGCAGACTTTGCCTTGAAGAAGCAGAGGCAAGATCAGGTTGATGCTGTTGGTGTTTCAGATTGTGAGATTTCTAACCCAACTCTTACAATGTGGAAAAGCCCTGATCAA

mRNA sequence

ACCCAATATACGATGATGGAATTGAAGGACATCATTCCGCCGGCACCGCCGCTGTTACTGCCGGACCTCTCGTTGCAAATTAGTCCGCCGTCGGATTCCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCACGGCTTTTTACCAAAACCCATCTGGATTTAGGGCCCAATAGTGGCGCCGGCCGCCGTGATCTCCACCGTCAAAATCAAATCTTTGGGCGTGCCACCTTCAAGAGAGCTCCCAAAATGGCGTTTGGGGTTAGGAGAAATATTAGAGCTCCGAGAATGAGATGGACCACTACTCTCCATGCCCATTTCGTCCACGCCGTTCAGCTCCTCGGCGGCCATGAAAGGGCAACGCCAAAATCTGTGTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAAAGCCATTTGCAGATGTATAGAACGGTGAAAAGCACTGACAAATCTACTGACTTTGCCTTGAAGAAGCAGAGGCAAGATCAGGTTGATGCTGTTGGTGTTTCAGATTGTGAGATTTCTAACCCAACTCTTACAATGTGGAAAAGCCCTGATCAA

Coding sequence (CDS)

ACCCAATATACGATGATGGAATTGAAGGACATCATTCCGCCGGCACCGCCGCTGTTACTGCCGGACCTCTCGTTGCAAATTAGTCCGCCGTCGGATTCCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCACGGCTTTTTACCAAAACCCATCTGGATTTAGGGCCCAATAGTGGCGCCGGCCGCCGTGATCTCCACCGTCAAAATCAAATCTTTGGGCGTGCCACCTTCAAGAGAGCTCCCAAAATGGCGTTTGGGGTTAGGAGAAATATTAGAGCTCCGAGAATGAGATGGACCACTACTCTCCATGCCCATTTCGTCCACGCCGTTCAGCTCCTCGGCGGCCATGAAAGGGCAACGCCAAAATCTGTGTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAAAGCCATTTGCAGATGTATAGAACGGTGAAAAGCACTGACAAATCTACTGACTTTGCCTTGAAGAAGCAGAGGCAAGATCAGGTTGATGCTGTTGGTGTTTCAGATTGTGAGATTTCTAACCCAACTCTTACAATGTGGAAAAGCCCTGATCAA

Protein sequence

TQYTMMELKDIIPPAPPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQ

Homology

[Close]

BLAST of MS016786 vs. NCBI nr
Match: XP_004152789.2 (probable transcription factor KAN4 isoform X2 [Cucumis sativus] >KGN62800.2 hypothetical protein Csa_022332 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-51
Identity = 120/177 (67.80%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 16  PPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRA 75
           PP  LPDLSL ISPPS SG+           F   H              H Q QIF   
Sbjct: 18  PPPPLPDLSLHISPPSGSGN---------HYFNHHH-------------HHHQPQIFSN- 77

Query: 76  TFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 135
            FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT
Sbjct: 78  HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 137

Query: 136 LAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLTMWKSPDQ 191
           LAHVKSHLQMYRTVKSTDK+TD A+K QRQD +D  GVS+CEIS NP+LTMWKSP+Q
Sbjct: 138 LAHVKSHLQMYRTVKSTDKATDSAMKNQRQD-IDGSGVSNCEISNNPSLTMWKSPNQ 170

[Close]

BLAST of MS016786 vs. NCBI nr
Match: XP_031736531.1 (probable transcription factor KAN4 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-51
Identity = 120/177 (67.80%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 16  PPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRA 75
           PP  LPDLSL ISPPS SG+           F   H              H Q QIF   
Sbjct: 18  PPPPLPDLSLHISPPSGSGN---------HYFNHHH-------------HHHQPQIFSN- 77

Query: 76  TFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 135
            FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT
Sbjct: 78  HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 137

Query: 136 LAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLTMWKSPDQ 191
           LAHVKSHLQMYRTVKSTDK+TD A+K QRQD +D  GVS+CEIS NP+LTMWKSP+Q
Sbjct: 138 LAHVKSHLQMYRTVKSTDKATDSAMKNQRQD-IDGSGVSNCEISNNPSLTMWKSPNQ 170

[Close]

BLAST of MS016786 vs. NCBI nr
Match: XP_031736532.1 (probable transcription factor KAN4 isoform X3 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-51
Identity = 120/177 (67.80%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 16  PPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRA 75
           PP  LPDLSL ISPPS SG+           F   H              H Q QIF   
Sbjct: 18  PPPPLPDLSLHISPPSGSGN---------HYFNHHH-------------HHHQPQIFSN- 77

Query: 76  TFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 135
            FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT
Sbjct: 78  HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 137

Query: 136 LAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLTMWKSPDQ 191
           LAHVKSHLQMYRTVKSTDK+TD A+K QRQD +D  GVS+CEIS NP+LTMWKSP+Q
Sbjct: 138 LAHVKSHLQMYRTVKSTDKATDSAMKNQRQD-IDGSGVSNCEISNNPSLTMWKSPNQ 170

[Close]

BLAST of MS016786 vs. NCBI nr
Match: XP_008444661.1 (PREDICTED: probable transcription factor KAN4 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-50
Identity = 119/187 (63.64%), Postives = 134/187 (71.66%), Query Frame = 0


Query: 6   MELKDIIPPAPPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDL 65
           M+  +     PP  LPDLSL ISPPSDSG+           F   H              
Sbjct: 6   MDYSNTTTATPPPPLPDLSLHISPPSDSGN---------HYFNHHH-------------- 65

Query: 66  HRQNQIFGRATFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 125
           H Q QI+    FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 66  HHQPQIYSN-HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 125

Query: 126 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLT 185
           LELMNVKDLTLAHVKSHLQMYRTVKSTDK+TD A+K QRQ ++D  GVS+CEIS NP+LT
Sbjct: 126 LELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQ-EIDGSGVSNCEISNNPSLT 167

Query: 186 MWKSPDQ 191
           MWKSP++
Sbjct: 186 MWKSPNK 167

[Close]

BLAST of MS016786 vs. NCBI nr
Match: XP_022996829.1 (probable transcription factor KAN4 isoform X3 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 118/179 (65.92%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 15  APPLLLPDLSLQISPPSD---SGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQI 74
           APP  LPDLSLQISPPSD   SGSDL+HENAA  L  KTH                    
Sbjct: 13  APP--LPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTH-------------------- 72

Query: 75  FGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 134
                FK   KM FG++R IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVK
Sbjct: 73  -----FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVK 132

Query: 135 DLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQ 191
           DLTLAHVKSHLQMYRTVK TDK+TD  LK Q Q +++  G S CE SNP LTM KSP+Q
Sbjct: 133 DLTLAHVKSHLQMYRTVKGTDKATDTGLKNQSQ-EINVNGASKCENSNPPLTMRKSPNQ 163

[Close]

BLAST of MS016786 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 99/171 (57.89%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 20  LPDLSLQISPP-----------------SDSG---SDLSHENAAARLFTKTHLDLGPNSG 79
           +PDLSLQIS P                 SDSG   SDLSHEN     F K  L LG +  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHEN---NFFNKPLLSLGFDHH 75

Query: 80  AGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERA 139
             RR    Q QI+GR  FKR+     G++R+IRAPRMRWT+TLHAHFVHAVQLLGGHERA
Sbjct: 76  HQRRSNMFQPQIYGR-DFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERA 135

Query: 140 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST--DFALKKQRQDQVD 169
           TPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +  +  ++K+ + +++
Sbjct: 136 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQRIE 182

[Close]

BLAST of MS016786 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-30
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 35  SDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAP 94
           S+++ ++A+ RL T       PN      + HR      R    + P+  F  +R +RAP
Sbjct: 120 SEVNGQHASRRLIT------NPNCSFNLHNRHR------RQAQPQPPR--FTAKRGVRAP 179

Query: 95  RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKS 154
           RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+DLTLAHVKSHLQMYRT+KST+K 
Sbjct: 180 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKP 235

Query: 155 TDFALKKQRQDQVDAVGVSDCE 177
           T             + G SDCE
Sbjct: 240 T------------TSSGQSDCE 235

[Close]

BLAST of MS016786 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.6e-29
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 30  PSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRR 89
           P D  S +   + ++   T  +     +S +     +  +Q   RA F   P+  F  +R
Sbjct: 154 PFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARF--MPR--FPAKR 213

Query: 90  NIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 149
           ++RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRTVK
Sbjct: 214 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 273

Query: 150 STDKS 155
           +TDK+
Sbjct: 274 TTDKA 274

[Close]

BLAST of MS016786 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-28
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 65  LHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 124
           LH      G    +  PK+    +R++RAPRMRWT+TLHA FVHAV+LLGGHERATPKSV
Sbjct: 298 LHGGQPFVGALASRFMPKLP--AKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSV 357

Query: 125 LELMNVKDLTLAHVKSHLQMYRTVKSTDK 154
           LELM+VKDLTLAHVKSHLQMYRTVKSTDK
Sbjct: 358 LELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

[Close]

BLAST of MS016786 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.9e-27
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 66  HRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVL 125
           H  +   G    +  PKM    +R++RAPRMRWT++LHA FVHAV+LLGGHERATPKSVL
Sbjct: 194 HHNHHHHGMIRSRFLPKMP--TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVL 253

Query: 126 ELMNVKDLTLAHVKSHLQMYRTVKSTDK 154
           ELM+VKDLTLAHVKSHLQMYRTVK+T+K
Sbjct: 254 ELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

[Close]

BLAST of MS016786 vs. ExPASy TrEMBL
Match: A0A0A0LP74 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360740 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-51
Identity = 120/177 (67.80%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 16  PPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRA 75
           PP  LPDLSL ISPPS SG+           F   H              H Q QIF   
Sbjct: 13  PPPPLPDLSLHISPPSGSGN---------HYFNHHH-------------HHHQPQIFSN- 72

Query: 76  TFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 135
            FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT
Sbjct: 73  HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 132

Query: 136 LAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLTMWKSPDQ 191
           LAHVKSHLQMYRTVKSTDK+TD A+K QRQD +D  GVS+CEIS NP+LTMWKSP+Q
Sbjct: 133 LAHVKSHLQMYRTVKSTDKATDSAMKNQRQD-IDGSGVSNCEISNNPSLTMWKSPNQ 165

[Close]

BLAST of MS016786 vs. ExPASy TrEMBL
Match: A0A1S3BAW6 (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103487932 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 5.4e-51
Identity = 119/187 (63.64%), Postives = 134/187 (71.66%), Query Frame = 0


Query: 6   MELKDIIPPAPPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDL 65
           M+  +     PP  LPDLSL ISPPSDSG+           F   H              
Sbjct: 6   MDYSNTTTATPPPPLPDLSLHISPPSDSGN---------HYFNHHH-------------- 65

Query: 66  HRQNQIFGRATFKRAPKMAFG-VRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 125
           H Q QI+    FKR PKM FG ++R+IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 66  HHQPQIYSN-HFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 125

Query: 126 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEIS-NPTLT 185
           LELMNVKDLTLAHVKSHLQMYRTVKSTDK+TD A+K QRQ ++D  GVS+CEIS NP+LT
Sbjct: 126 LELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQ-EIDGSGVSNCEISNNPSLT 167

Query: 186 MWKSPDQ 191
           MWKSP++
Sbjct: 186 MWKSPNK 167

[Close]

BLAST of MS016786 vs. ExPASy TrEMBL
Match: A0A6J1K338 (probable transcription factor KAN4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491957 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.0e-50
Identity = 118/179 (65.92%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 15  APPLLLPDLSLQISPPSD---SGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQI 74
           APP  LPDLSLQISPPSD   SGSDL+HENAA  L  KTH                    
Sbjct: 13  APP--LPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTH-------------------- 72

Query: 75  FGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 134
                FK   KM FG++R IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVK
Sbjct: 73  -----FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVK 132

Query: 135 DLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQ 191
           DLTLAHVKSHLQMYRTVK TDK+TD  LK Q Q +++  G S CE SNP LTM KSP+Q
Sbjct: 133 DLTLAHVKSHLQMYRTVKGTDKATDTGLKNQSQ-EINVNGASKCENSNPPLTMRKSPNQ 163

[Close]

BLAST of MS016786 vs. ExPASy TrEMBL
Match: A0A6J1K9S6 (probable transcription factor KAN4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491957 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.0e-50
Identity = 118/179 (65.92%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 15  APPLLLPDLSLQISPPSD---SGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQI 74
           APP  LPDLSLQISPPSD   SGSDL+HENAA  L  KTH                    
Sbjct: 13  APP--LPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTH-------------------- 72

Query: 75  FGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 134
                FK   KM FG++R IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVK
Sbjct: 73  -----FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVK 132

Query: 135 DLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQ 191
           DLTLAHVKSHLQMYRTVK TDK+TD  LK Q Q +++  G S CE SNP LTM KSP+Q
Sbjct: 133 DLTLAHVKSHLQMYRTVKGTDKATDTGLKNQSQ-EINVNGASKCENSNPPLTMRKSPNQ 163

[Close]

BLAST of MS016786 vs. ExPASy TrEMBL
Match: A0A6J1KC48 (probable transcription factor KAN4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491957 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.0e-50
Identity = 118/179 (65.92%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 15  APPLLLPDLSLQISPPSD---SGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQI 74
           APP  LPDLSLQISPPSD   SGSDL+HENAA  L  KTH                    
Sbjct: 13  APP--LPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTH-------------------- 72

Query: 75  FGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 134
                FK   KM FG++R IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVK
Sbjct: 73  -----FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVK 132

Query: 135 DLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQ 191
           DLTLAHVKSHLQMYRTVK TDK+TD  LK Q Q +++  G S CE SNP LTM KSP+Q
Sbjct: 133 DLTLAHVKSHLQMYRTVKGTDKATDTGLKNQSQ-EINVNGASKCENSNPPLTMRKSPNQ 163

[Close]

BLAST of MS016786 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-40
Identity = 99/171 (57.89%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 20  LPDLSLQISPP-----------------SDSG---SDLSHENAAARLFTKTHLDLGPNSG 79
           +PDLSLQIS P                 SDSG   SDLSHEN     F K  L LG +  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHEN---NFFNKPLLSLGFDHH 75

Query: 80  AGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERA 139
             RR    Q QI+GR  FKR+     G++R+IRAPRMRWT+TLHAHFVHAVQLLGGHERA
Sbjct: 76  HQRRSNMFQPQIYGR-DFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERA 135

Query: 140 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST--DFALKKQRQDQVD 169
           TPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +  +  ++K+ + +++
Sbjct: 136 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQRIE 182

[Close]

BLAST of MS016786 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-40
Identity = 99/171 (57.89%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 20  LPDLSLQISPP-----------------SDSG---SDLSHENAAARLFTKTHLDLGPNSG 79
           +PDLSLQIS P                 SDSG   SDLSHEN     F K  L LG +  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHEN---NFFNKPLLSLGFDHH 75

Query: 80  AGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERA 139
             RR    Q QI+GR  FKR+     G++R+IRAPRMRWT+TLHAHFVHAVQLLGGHERA
Sbjct: 76  HQRRSNMFQPQIYGR-DFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERA 135

Query: 140 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST--DFALKKQRQDQVD 169
           TPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +  +  ++K+ + +++
Sbjct: 136 TPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQRIE 182

[Close]

BLAST of MS016786 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-31
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 35  SDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAP 94
           S+++ ++A+ RL T       PN      + HR      R    + P+  F  +R +RAP
Sbjct: 120 SEVNGQHASRRLIT------NPNCSFNLHNRHR------RQAQPQPPR--FTAKRGVRAP 179

Query: 95  RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKS 154
           RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+DLTLAHVKSHLQMYRT+KST+K 
Sbjct: 180 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKP 235

Query: 155 TDFALKKQRQDQVDAVGVSDCE 177
           T             + G SDCE
Sbjct: 240 T------------TSSGQSDCE 235

[Close]

BLAST of MS016786 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-30
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 30  PSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRR 89
           P D  S +   + ++   T  +     +S +     +  +Q   RA F   P+  F  +R
Sbjct: 154 PFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARF--MPR--FPAKR 213

Query: 90  NIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 149
           ++RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRTVK
Sbjct: 214 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 273

Query: 150 STDKS 155
           +TDK+
Sbjct: 274 TTDKA 274

[Close]

BLAST of MS016786 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-28
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 66  HRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVL 125
           H  +   G    +  PKM    +R++RAPRMRWT++LHA FVHAV+LLGGHERATPKSVL
Sbjct: 194 HHNHHHHGMIRSRFLPKMP--TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVL 253

Query: 126 ELMNVKDLTLAHVKSHLQMYRTVKSTDK 154
           ELM+VKDLTLAHVKSHLQMYRTVK+T+K
Sbjct: 254 ELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

The following BLAST results are available for this feature:

BLAST of MS016786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152789.2	8.5e-51	67.80	probable transcription factor KAN4 isoform X2 [Cucumis sativus] >KGN62800.2 hypo...	[more]
XP_031736531.1	8.5e-51	67.80	probable transcription factor KAN4 isoform X1 [Cucumis sativus]	[more]
XP_031736532.1	8.5e-51	67.80	probable transcription factor KAN4 isoform X3 [Cucumis sativus]	[more]
XP_008444661.1	1.1e-50	63.64	PREDICTED: probable transcription factor KAN4 [Cucumis melo]	[more]
XP_022996829.1	1.2e-49	65.92	probable transcription factor KAN4 isoform X3 [Cucurbita maxima]	[more]

BLAST of MS016786 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJV5	3.5e-39	57.89	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q941I2	2.3e-30	54.23	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
Q9C616	5.6e-29	56.00	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q0J235	3.6e-28	71.91	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q93WJ9	8.9e-27	69.32	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of MS016786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP74	4.1e-51	67.80	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360740 PE=4 S...	[more]
A0A1S3BAW6	5.4e-51	63.64	probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103487932 PE=4 ...	[more]
A0A6J1K338	6.0e-50	65.92	probable transcription factor KAN4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1K9S6	6.0e-50	65.92	probable transcription factor KAN4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KC48	6.0e-50	65.92	probable transcription factor KAN4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of MS016786 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42630.1	2.5e-40	57.89	Homeodomain-like superfamily protein	[more]
AT5G42630.2	2.5e-40	57.89	Homeodomain-like superfamily protein	[more]
AT4G17695.1	1.6e-31	54.23	Homeodomain-like superfamily protein	[more]
AT1G32240.1	4.0e-30	56.00	Homeodomain-like superfamily protein	[more]
AT5G16560.1	6.3e-28	69.32	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 95..146 e-value: 5.5E-6 score: 26.5
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 94..147 e-value: 8.2E-24 score: 81.7
None	No IPR available	GENE3D	1.10.10.60		coord: 93..150 e-value: 5.4E-27 score: 95.7
None	No IPR available	PANTHER	PTHR31496:SF25	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 32..171
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 32..171
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 91..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016786.1	MS016786.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000976	transcription cis-regulatory region binding