MS016674 (gene) Bitter gourd (TR) v1

Overview
NameMS016674
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold563: 5087 .. 5386 (-)
RNA-Seq ExpressionMS016674
SyntenyMS016674
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGC

mRNA sequence

ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGC

Coding sequence (CDS)

ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGC

Protein sequence

MVGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTDDGGVALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGG
Homology
BLAST of MS016674 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 70/100 (70.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 2   VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
           + CICF G  +K+K NQ    GDKG RKFRPPRGY GGT  GG   GNGNLTVLTD DGG
Sbjct: 1   MSCICFRGPKEKKKSNQ--AHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGG 60

Query: 62  VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGG 101
           V LA+T  F +AAAAV D+GE GGSCGGGECGG GGCGGG
Sbjct: 61  VVLASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGG 98

BLAST of MS016674 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 2   VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
           + CICF  R  K+++N     GD G RKFRPPRGY GGT       GNGNLTVLTD DGG
Sbjct: 55  MSCICF--RGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAAAASTPGNGNLTVLTDHDGG 114

Query: 62  VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGG 101
           V LA+T  F +AAAAV D+GE GG CGG    GGGGCGGG
Sbjct: 115 VVLASTFGFAVAAAAVVDAGEHGGECGGAGGCGGGGCGGG 152

BLAST of MS016674 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.3e-19
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 4  CICFG-GRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD--DGG 63
          CICFG G+ KK+  N     G KGGRKFRPPRG+GG T  GG GAGNGNL VLTD  DGG
Sbjct: 5  CICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGG 64

Query: 64 VALAATVAFTIAAAAVADSGECGGSCGGGECGGG 95
          VA+ AT+ F +AAAAV D  E GGSCGGGECGGG
Sbjct: 65 VAMVATLGFAVAAAAVVDVAEHGGSCGGGECGGG 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023528737.11.1e-2070.00loricrin-like [Cucurbita pepo subsp. pepo][more]
KAG6580518.18.8e-1561.00hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDL88.3e-1968.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016674.1MS016674.1mRNA