MS016254 (gene) Bitter gourd (TR) v1

Overview


Name	MS016254
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SAM domain-containing protein
Location	scaffold9_2: 1440563 .. 1441123 (-)
RNA-Seq Expression	MS016254
Synteny	MS016254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGTTCTCTTGGCTTTCGAAAACAACCCTAGATCCTTCACTGGTGTACGAGTACGGCCTCGCCTTCGCCCACAACGAGCTCGAGGAAGACGACATCGTCTACTTCAACCACGAATTTCTCCAGAGCATGGGAATCTCCATAGCCAAGCACCGTCTCGAGATCCTCAAGCTCGCTCGCAAGGAGAACGCCCTCCATCCGCGCCCGGTCACTCGTCTTCTGCTCGCAATCAAGAGGACCAAGCGCTGTTTCTCCAATCTGATTCGGAATTTCTCTCACGCTCACCGCCGCGCCGACGACAGCAAAGCCCTAGTCGTCGTCCCCAAATCCACCTACGCCGGGAAATTGCTGAAGAGGAACAAGAAATTGATCATTGCCAAACAGCAGGGGAGCTTGCTGCTCACCAACGGATCGAGTCCGGCGCCGGCGCCGCCGCGAGCAGATAGCTTTTCCGGCCCGATCGTGTACAATCTGCGGAGGGAGGAGGAGGATGGATATTGGGGAAATGGCGTGGAGGAGATCAGGTGGGATACAATGTTCCAGAATTTGAAACCTACT

mRNA sequence

ATGGATTGGTTCTCTTGGCTTTCGAAAACAACCCTAGATCCTTCACTGGTGTACGAGTACGGCCTCGCCTTCGCCCACAACGAGCTCGAGGAAGACGACATCGTCTACTTCAACCACGAATTTCTCCAGAGCATGGGAATCTCCATAGCCAAGCACCGTCTCGAGATCCTCAAGCTCGCTCGCAAGGAGAACGCCCTCCATCCGCGCCCGGTCACTCGTCTTCTGCTCGCAATCAAGAGGACCAAGCGCTGTTTCTCCAATCTGATTCGGAATTTCTCTCACGCTCACCGCCGCGCCGACGACAGCAAAGCCCTAGTCGTCGTCCCCAAATCCACCTACGCCGGGAAATTGCTGAAGAGGAACAAGAAATTGATCATTGCCAAACAGCAGGGGAGCTTGCTGCTCACCAACGGATCGAGTCCGGCGCCGGCGCCGCCGCGAGCAGATAGCTTTTCCGGCCCGATCGTGTACAATCTGCGGAGGGAGGAGGAGGATGGATATTGGGGAAATGGCGTGGAGGAGATCAGGTGGGATACAATGTTCCAGAATTTGAAACCTACT

Coding sequence (CDS)

ATGGATTGGTTCTCTTGGCTTTCGAAAACAACCCTAGATCCTTCACTGGTGTACGAGTACGGCCTCGCCTTCGCCCACAACGAGCTCGAGGAAGACGACATCGTCTACTTCAACCACGAATTTCTCCAGAGCATGGGAATCTCCATAGCCAAGCACCGTCTCGAGATCCTCAAGCTCGCTCGCAAGGAGAACGCCCTCCATCCGCGCCCGGTCACTCGTCTTCTGCTCGCAATCAAGAGGACCAAGCGCTGTTTCTCCAATCTGATTCGGAATTTCTCTCACGCTCACCGCCGCGCCGACGACAGCAAAGCCCTAGTCGTCGTCCCCAAATCCACCTACGCCGGGAAATTGCTGAAGAGGAACAAGAAATTGATCATTGCCAAACAGCAGGGGAGCTTGCTGCTCACCAACGGATCGAGTCCGGCGCCGGCGCCGCCGCGAGCAGATAGCTTTTCCGGCCCGATCGTGTACAATCTGCGGAGGGAGGAGGAGGATGGATATTGGGGAAATGGCGTGGAGGAGATCAGGTGGGATACAATGTTCCAGAATTTGAAACCTACT

Protein sequence

MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGYWGNGVEEIRWDTMFQNLKPT

Homology

[Close]

BLAST of MS016254 vs. NCBI nr
Match: XP_022153409.1 (uncharacterized protein LOC111020921 [Momordica charantia])

HSP 1 Score: 375.6 bits (963), Expect = 2.6e-100
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA
Sbjct: 32  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 91

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR
Sbjct: 92  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 151

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDT 180
           NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR EEEDGYWGNGVEEIRWDT
Sbjct: 152 NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEEDGYWGNGVEEIRWDT 211

Query: 181 MFQNLKPT 188
           MFQNLKPT
Sbjct: 212 MFQNLKPT 219

[Close]

BLAST of MS016254 vs. NCBI nr
Match: XP_023525324.1 (uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 hypothetical protein SDJN02_00143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 3.9e-80
Identity = 158/193 (81.87%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEE 180
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDGYW NGVEE
Sbjct: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEE 180

Query: 181 IRWDTMFQNLKPT 188
           IRWDTMFQNLKPT
Sbjct: 181 IRWDTMFQNLKPT 190

[Close]

BLAST of MS016254 vs. NCBI nr
Match: XP_022998747.1 (uncharacterized protein LOC111493318 [Cucurbita maxima])

HSP 1 Score: 308.1 bits (788), Expect = 5.0e-80
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVE 180
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR      EEEDGYW NGVE
Sbjct: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEEDGYWSNGVE 180

Query: 181 EIRWDTMFQNLKPT 188
           EIRWDTMFQNLKPT
Sbjct: 181 EIRWDTMFQNLKPT 191

[Close]

BLAST of MS016254 vs. NCBI nr
Match: XP_022948497.1 (uncharacterized protein LOC111452156 [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 4.3e-79
Identity = 157/193 (81.35%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEE 180
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDG W NGVEE
Sbjct: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGCWSNGVEE 180

Query: 181 IRWDTMFQNLKPT 188
           IRWDTMFQNLKPT
Sbjct: 181 IRWDTMFQNLKPT 190

[Close]

BLAST of MS016254 vs. NCBI nr
Match: KAG6606819.1 (hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.3 bits (721), Expect = 3.0e-72
Identity = 147/182 (80.77%), Postives = 160/182 (87.91%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 33  MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 92

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 93  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 152

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEE 177
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDGYW NGVEE
Sbjct: 153 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEE 211

[Close]

BLAST of MS016254 vs. ExPASy TrEMBL
Match: A0A6J1DIZ2 (uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020921 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.2e-100
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA
Sbjct: 32  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 91

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR
Sbjct: 92  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 151

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDT 180
           NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR EEEDGYWGNGVEEIRWDT
Sbjct: 152 NKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEEDGYWGNGVEEIRWDT 211

Query: 181 MFQNLKPT 188
           MFQNLKPT
Sbjct: 212 MFQNLKPT 219

[Close]

BLAST of MS016254 vs. ExPASy TrEMBL
Match: A0A6J1K8U0 (uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVE 180
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR      EEEDGYW NGVE
Sbjct: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEEDGYWSNGVE 180

Query: 181 EIRWDTMFQNLKPT 188
           EIRWDTMFQNLKPT
Sbjct: 181 EIRWDTMFQNLKPT 191

[Close]

BLAST of MS016254 vs. ExPASy TrEMBL
Match: A0A6J1G9F1 (uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC111452156 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.1e-79
Identity = 157/193 (81.35%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120

Query: 121 NKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEE 180
           NKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDG W NGVEE
Sbjct: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGCWSNGVEE 180

Query: 181 IRWDTMFQNLKPT 188
           IRWDTMFQNLKPT
Sbjct: 181 IRWDTMFQNLKPT 190

[Close]

BLAST of MS016254 vs. ExPASy TrEMBL
Match: A0A2C9UYZ2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061500 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.1e-63
Identity = 134/196 (68.37%), Postives = 153/196 (78.06%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWL+KT L+PSLVYEYGLAF+HNELEEDDI YFNHEFLQSMGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLAKTGLEPSLVYEYGLAFSHNELEEDDIGYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYA----GK 120
           RKE    P P+TR+L+AIKRTKRC +  IR +S   RR  +  ALVVVP+  YA    G 
Sbjct: 61  RKEKGASPHPMTRVLVAIKRTKRCLAKYIRAWS---RR--EESALVVVPRPGYATRWRGA 120

Query: 121 LLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRRE-----EEDGYWGNG 180
           +LKRNKKL++A  QG LLLTNGS    + PR DSFS P+VY+L +E     ++DGYW  G
Sbjct: 121 MLKRNKKLMLA-NQGRLLLTNGSPVVVSGPRLDSFSSPVVYDLHKEAKMDGDDDGYWSTG 180

Query: 181 VEEIRWDTMFQNLKPT 188
           VEEIRWDTMFQNLKPT
Sbjct: 181 VEEIRWDTMFQNLKPT 190

[Close]

BLAST of MS016254 vs. ExPASy TrEMBL
Match: A0A5A7TQT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002020 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 129/191 (67.54%), Postives = 151/191 (79.06%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLSKT+L PSLVYEYGLA A+NELE +DI+YFNHEFLQS+GISIAKHRLEILKL 
Sbjct: 10  MDWFSWLSKTSLHPSLVYEYGLALANNELEYEDILYFNHEFLQSIGISIAKHRLEILKLV 69

Query: 61  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 120
           RKENALHPRP+TR+LLA+K+TKR F+NLIRNF+H   + ++SKALV+VPKS+YA K+LKR
Sbjct: 70  RKENALHPRPITRILLALKKTKRRFANLIRNFTHHDDQLEESKALVLVPKSSYAAKILKR 129

Query: 121 NKKLIIAKQQGSLLLTNGS--SPAPAPPRADSFSGPIVYNLRRE--EEDGYWGNGVEEIR 180
           NK   + K QG  LLTNGS         R   FSGPI+Y++R     E+     GVEEIR
Sbjct: 130 NKTFSVGKTQGRFLLTNGSPDHDVKIGRRIQHFSGPILYDVRSSAAAEEEKKKEGVEEIR 189

Query: 181 WDTMFQNLKPT 188
           WD MFQNLKPT
Sbjct: 190 WDAMFQNLKPT 200

[Close]

BLAST of MS016254 vs. TAIR 10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-47
Identity = 107/201 (53.23%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
           MDWFSWLS+T L+ SL+YEYGL+F++NELE +DI YFNHEFLQSMGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKENALHP---RPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYA--- 120
           R++    P   R + R+L+AIK+T +CFS  +R +    RR + S+ALVVV +ST +   
Sbjct: 61  RRDRKPSPLTARSIFRVLIAIKKTGKCFSEHVRAWI---RREESSRALVVVSRSTSSSGN 120

Query: 121 GKLLKRNKKLIIAKQQGS------LLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGYW 180
           G+     KK ++    G+      LLLTNG+     P R DSFS P V +   E++D +W
Sbjct: 121 GRWKSARKKRLVMPSNGNGVKEERLLLTNGT-----PCRLDSFSNPKV-SSGYEDDDNHW 180

Query: 181 GNG--VEEIRWDTMFQNLKPT 188
           GN    E+I+WD+MFQNLKPT
Sbjct: 181 GNKDVEEKIKWDSMFQNLKPT 192

[Close]

BLAST of MS016254 vs. TAIR 10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 100/203 (49.26%), Postives = 138/203 (67.98%), Query Frame = 0


Query: 3   WFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARK 62
           WFSWLS+T L+PSL++EYGL+F+ NELE +DI YF+HEFLQSMGISIAKHRLEILKLAR+
Sbjct: 5   WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 63  ENALHP----RPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKST------ 122
           +    P    R ++R++ AIK+T++C S+ +R +      +  S+ALV+VPK T      
Sbjct: 65  DRKNSPPLTSRSISRVVTAIKKTRKCLSDHVRAWIRREEESASSRALVLVPKKTSNGIGK 124

Query: 123 YAGKLLKRNKKLII-------AKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEED 182
           + G  LKRNK+ ++        ++Q  LLLTNG+     P R DSFS P+V++   ++E 
Sbjct: 125 WRGGFLKRNKRSVMPSNGNGGLEKQERLLLTNGT-----PCRIDSFSSPMVFDYSFKDEK 184

Query: 183 GY-WGNGVEEIRWDTMFQNLKPT 188
            Y      E+I+WD+MFQNLKPT
Sbjct: 185 LYAQDTYFEDIKWDSMFQNLKPT 202

[Close]

BLAST of MS016254 vs. TAIR 10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-20
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 60
          MDWFSWLSKT LDP+L YEYGL FA  +L+ +DI  FNH FL+ +G+++ KHR+EILKL+
Sbjct: 1  MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 61 RKE----NALHPRPVTRLLLA--IKRTK 83
          ++E    ++ + RPV+  L++  IK TK
Sbjct: 61 KRETQALSSYNHRPVSAKLISVVIKATK 88

The following BLAST results are available for this feature:

BLAST of MS016254 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153409.1	2.6e-100	99.47	uncharacterized protein LOC111020921 [Momordica charantia]	[more]
XP_023525324.1	3.9e-80	81.87	uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 ...	[more]
XP_022998747.1	5.0e-80	81.44	uncharacterized protein LOC111493318 [Cucurbita maxima]	[more]
XP_022948497.1	4.3e-79	81.35	uncharacterized protein LOC111452156 [Cucurbita moschata]	[more]
KAG6606819.1	3.0e-72	80.77	hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS016254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIZ2	1.2e-100	99.47	uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1K8U0	2.4e-80	81.44	uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318...	[more]
A0A6J1G9F1	2.1e-79	81.35	uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC1114521...	[more]
A0A2C9UYZ2	2.1e-63	68.37	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061500 PE=4 SV=...	[more]
A0A5A7TQT5	2.7e-63	67.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MS016254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80520.1	3.5e-47	53.23	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G15760.1	1.1e-45	49.26	Sterile alpha motif (SAM) domain-containing protein	[more]
AT2G12462.1	4.8e-20	53.41	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 1..67 e-value: 7.2E-11 score: 43.5
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 19..63
None	No IPR available	PANTHER	PTHR33915	OSJNBA0033G05.11 PROTEIN	coord: 1..187
None	No IPR available	PANTHER	PTHR33915:SF1	OSJNBA0033G05.11 PROTEIN	coord: 1..187
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 2..62 e-value: 4.18541E-8 score: 46.0785

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016254.1	MS016254.1	mRNA