MS016214 (gene) Bitter gourd (TR) v1

Overview
NameMS016214
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMAGUK p55 subfamily member 4 like
Locationscaffold9_2: 1114827 .. 1117309 (+)
RNA-Seq ExpressionMS016214
SyntenyMS016214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTGGCAGCAGATGATTTTTCCCGTACGCCGTGTTTGGCTCGCCGTTTATGCCCGCCTTAAAAATCCCAAAAACGGTGAGTTTTTACTTTCTATGCCCTTCCCGATCAGACGAATTAAAATTACAACCAAAACCTTCTCCTCATTTATTCATTTTTTCTTAATTTTATTTTCGATTAAAAATCATAGTTATTTATATTTTAAGGTTACTTATATAGTACTTTAGGTTGATTTTCAAATTTTTTAATTTAGTTTCCATAATTATTGTTTGATTTCGATTTGGTTTATATAATTTTAAAAAGTTTTCCTTTGATCCTTGTGGTAGAGTTAAATATCATGAATGGTTCTCAAAAACTGAACCTATTTTCTCTTACTTTTACTTAGCCCTAGACAAACTAGTACGATCAACTCATCCAATTAATTAAATAGAAAATATTAATTTATTGCCTCACAAAAAAAAGTATCACATCTCCCGATTTTTAGATTTAGTAAAATTGTAGGATCAAAGTATGAACTATAAAGACAAATTTTAAGTCATCAATTGGAAGACTAAATTCGTAATTTACACCGTATTTGACCTTTTGATTAAAAAAAAATAGAACTATTAAAAAATATAACTTTTAATGATCCAAAATTTGCCGTCTCCATTTAATTTTTTTGTATTTAAATATTAATAACAGACAAAATACTCTTTCTTTATAGAAAGGAGAAGAGAATTTTATGTATTAATCAAATTAAATTTTGCTATTCATTATAATTTCTATGGGGAGATTAAATTAAATTATATGGATTCAACGGTTATTACCGGACATCAAAATTTGGGTTCTGGATGAAATGATAAGATAATTTATTAATATTGTAATTGAAAATAAATCATGTCAGTTCTTCTTTTGATATTATAAATTTTACAAAGAGAAAAAACTATCTGAAAAGATACCGACACGTCAGCAATTAAATGGGTGTATTATATAGTTGAAATTCCTTGAGTCGGTTGGTGATTAGTTCTAATCATAATTTAATTGAGTTTAGGGACATTAAAAATAAATAAATAAAGATCAAATCCCAAGTGGGAAAAGATCTACTAGACCGACCCCCACTTTNTAGGGAAAAAAAAAAAAGAGAGCTAGCCCCTAAAAAATCTTTAATTGTTTTTTTTTAAATAAAAATGAAAAAAAGCAAGATGGGAGAATTCGAACTAAACTTTAGTTTGGGTTAGATATCGATTTATTTATAATTTTCTTATTCTTTTAATTTTTTAAAGATTATATATTTTAGGTGAAAGGTTAAACTACTCATGTACGAGAGTAGTAAATACCTTATTTTTTTTCTAAAATTTTTTAAATATTGTATTTTAGTTTATTCATTATACACGATGTTAATTAATAATAATTATTTAGGATTATCCTAAAAATTCAAAGTATTAATTAAAGTGACCTGAAAAATTCCACTTTGTAAAAATTGTAATTAATTAAGTAACTTTATAAAGTTGGTTTGGATAAACATCTTTTTCACTCAAAGCCTTTTTGATGCCCCCTTAGTCACAAAAGCATTGTCAATGGCTTGAAAAAGAGGAATCAACATCACAAATCACCTCCTCTCTCTCTTTTTCTCCCTTTTTTTTTTTCTTTTCCCAATTACTATTCTTCTTTTAGGGGGAAAAATGCTTCCAACAAGGAATCAGGTCCACTTGGCTGACCCTTTTGGACCACTTCTTCTTGTTGGGCATCTATATTCTGAGTTTATTAGGTTTGGTTAAATCTCATTTGTTTGTTTGGAGAAAAATAATCGAAAAAATAAGTTATGCGAGTTTAGTGAGAAAATCTTTTTTTTTTAATACAATATGTGGGGATGAGAGATCGAACTCACGACCGAGGTCGGAGGGCTCACATTGGTACAGTGAGAAAATTTCATAGATTTTCCTTTTGTTATTGTATTTATTATGTTTCCTTCCTGGTTGGTTTCCTAATTCTTTTAATTTTAGGCAAACATTGAACATGTTTTATATGTATATATGTGTATCAATTAGATCAACGAGTAACTGAGTGAAAAATCCCTAATTTGTCACGATACCTTGGTATTACTATTGTATTTAGTATTTGTTTGAATTAGGTAAAGACAAACCATTTTAATGTGCTCATAGTTCAGTAATTAATACTTGCTCTTTTCTTGGAGGTCGGAAGTTCGAACCTCCATACCTTCAAGTGTTATCAAACGGACCGTAAATGATTCCTAACTTGTTGCTTGCGGTTAACAGATGAAGGACTTTTGAAACTTCACGACGATGTAGAAACATGCGGCTATCAAGATGTGAAGGTGATGTGGGAGATACTAAGTAGATCAGAAACCGAGCTGATAAATCACCACCACCAAATAAGGCGGAAGCACAAATCTTTTTGGAAGCCTTTGGTGTGGTCTAACCCTAACTCTAACCATGATCCAGTTAGAACAACAACTTTTCCAACTTTCGACCCAATTTCA

mRNA sequence

ATGGGATTTTGGCAGCAGATGATTTTTCCCGTACGCCGTGTTTGGCTCGCCGTTTATGCCCGCCTTAAAAATCCCAAAAACGATGAAGGACTTTTGAAACTTCACGACGATGTAGAAACATGCGGCTATCAAGATGTGAAGGTGATGTGGGAGATACTAAGTAGATCAGAAACCGAGCTGATAAATCACCACCACCAAATAAGGCGGAAGCACAAATCTTTTTGGAAGCCTTTGGTGTGGTCTAACCCTAACTCTAACCATGATCCAGTTAGAACAACAACTTTTCCAACTTTCGACCCAATTTCA

Coding sequence (CDS)

ATGGGATTTTGGCAGCAGATGATTTTTCCCGTACGCCGTGTTTGGCTCGCCGTTTATGCCCGCCTTAAAAATCCCAAAAACGATGAAGGACTTTTGAAACTTCACGACGATGTAGAAACATGCGGCTATCAAGATGTGAAGGTGATGTGGGAGATACTAAGTAGATCAGAAACCGAGCTGATAAATCACCACCACCAAATAAGGCGGAAGCACAAATCTTTTTGGAAGCCTTTGGTGTGGTCTAACCCTAACTCTAACCATGATCCAGTTAGAACAACAACTTTTCCAACTTTCGACCCAATTTCA

Protein sequence

MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETELINHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTTFPTFDPIS
Homology
BLAST of MS016214 vs. NCBI nr
Match: XP_022983947.1 (uncharacterized protein LOC111482415 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW+Q+IFPVRRVWLAVY RLK  KNDEGLLKLHDDVETCGYQDVKVMWEIL +SE EL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTT----FPTFDPIS 103
           INHHHQ +RKHK FWK  +WSNPNS  D   +TT    FPTF PIS
Sbjct: 61  INHHHQPKRKHKRFWKDFLWSNPNS--DSTTSTTEMMPFPTFSPIS 104

BLAST of MS016214 vs. NCBI nr
Match: XP_004137647.1 (uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical protein Csa_002613 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38
Identity = 82/104 (78.85%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW QMIFPVRRVWLAVY RLK  +NDEGLLKLHDDVETCGYQDVKVMWEIL RSE EL
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDP--VRTTTFPTFDPIS 103
           IN HHQ+RRKHK FWK LVWSN NSN      + T FPTF PIS
Sbjct: 61  IN-HHQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

BLAST of MS016214 vs. NCBI nr
Match: XP_022934534.1 (uncharacterized protein LOC111441680 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 80/106 (75.47%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW+Q+IFPVRRVWLAVY RLK  KNDEGLLKLHDDVETCGYQDVKVMWEIL +SE EL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTT----FPTFDPIS 103
           INHHHQ RRKHK FWK  +WS PNS  D   +TT    FPTF+ IS
Sbjct: 61  INHHHQTRRKHKPFWKDFLWSIPNS--DSTTSTTKMIPFPTFNSIS 104

BLAST of MS016214 vs. NCBI nr
Match: KAG7018111.1 (hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 79/106 (74.53%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW+Q+IFPVRRVWLAVY RLK  KNDEG+LKLHDDVETCGYQDVKVMWEIL +SE EL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGVLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTT----FPTFDPIS 103
           I+HH Q RRKHK FWK  +WSNPNS  D   +TT    FPTF PIS
Sbjct: 61  IHHHQQTRRKHKPFWKDFLWSNPNS--DSTTSTTKMMPFPTFSPIS 104

BLAST of MS016214 vs. NCBI nr
Match: XP_011466987.1 (PREDICTED: uncharacterized protein LOC101292722 [Fragaria vesca subsp. vesca])

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-24
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
          M FW +M+FPVRRVWLAV  R+K  KN  GLLKLHDDV+TCGYQDV+VMW++LSR E EL
Sbjct: 1  MEFWDKMVFPVRRVWLAVSTRVKARKNGAGLLKLHDDVQTCGYQDVQVMWQMLSR-EAEL 60

Query: 61 INHHHQIRRKHKSFWKPLVWSNPNS 86
          INHHH  R+  + FW+   WSN +S
Sbjct: 61 INHHHAKRKHRRPFWRVFEWSNNHS 84

BLAST of MS016214 vs. ExPASy TrEMBL
Match: A0A6J1J0R9 (uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW+Q+IFPVRRVWLAVY RLK  KNDEGLLKLHDDVETCGYQDVKVMWEIL +SE EL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTT----FPTFDPIS 103
           INHHHQ +RKHK FWK  +WSNPNS  D   +TT    FPTF PIS
Sbjct: 61  INHHHQPKRKHKRFWKDFLWSNPNS--DSTTSTTEMMPFPTFSPIS 104

BLAST of MS016214 vs. ExPASy TrEMBL
Match: A0A0A0LD54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.7e-39
Identity = 82/104 (78.85%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW QMIFPVRRVWLAVY RLK  +NDEGLLKLHDDVETCGYQDVKVMWEIL RSE EL
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDP--VRTTTFPTFDPIS 103
           IN HHQ+RRKHK FWK LVWSN NSN      + T FPTF PIS
Sbjct: 61  IN-HHQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

BLAST of MS016214 vs. ExPASy TrEMBL
Match: A0A6J1F2W0 (uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC111441680 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.2e-38
Identity = 80/106 (75.47%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
           MGFW+Q+IFPVRRVWLAVY RLK  KNDEGLLKLHDDVETCGYQDVKVMWEIL +SE EL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQIRRKHKSFWKPLVWSNPNSNHDPVRTTT----FPTFDPIS 103
           INHHHQ RRKHK FWK  +WS PNS  D   +TT    FPTF+ IS
Sbjct: 61  INHHHQTRRKHKPFWKDFLWSIPNS--DSTTSTTKMIPFPTFNSIS 104

BLAST of MS016214 vs. ExPASy TrEMBL
Match: A0A2P6RV40 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0131671 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 1  MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
          M FW +MIFPVRRVWLAV  R+K  KN  GLLKLHDDV+TCGYQDV+VMW++LSR E EL
Sbjct: 1  MEFWDKMIFPVRRVWLAVSTRVKARKNGAGLLKLHDDVQTCGYQDVQVMWQMLSR-EAEL 60

Query: 61 INHHHQIRRKHKSFWKPLVWSNPNS 86
          INHHH  +RK + FW+   WSN +S
Sbjct: 61 INHHH-AKRKQRPFWRVFEWSNNHS 83

BLAST of MS016214 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.1e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1  MGFWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSETEL 60
          M  W +MIFPVRRVWLAV AR++  KN  GLLKLHDDVETCGY+DVKVMWE+L RSE+EL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 INHHHQIRRKHKSFWKPLVWSN 83
          +   HQ +RK + FW+  VWSN
Sbjct: 61 VG--HQPKRKQRPFWRVSVWSN 80

BLAST of MS016214 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 0

Query: 3  FWQQMIFPVRRVWLAVYARLKNPKNDEGLLKLHDDVETCGYQDVKVMWEILSRSE--TEL 62
          +W  M FP RR+W     R+       GLL+L  DV +C Y+D+ +MW +L ++E  T +
Sbjct: 9  WWNTMAFPTRRIWNRFTVRV--GFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRV 68

Query: 63 INHHHQIRRKHKSFWKPL 79
               Q +RK K  W  L
Sbjct: 69 PIQQQQQQRK-KPCWNLL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022983947.18.9e-3976.42uncharacterized protein LOC111482415 [Cucurbita maxima][more]
XP_004137647.12.0e-3878.85uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical ... [more]
XP_022934534.11.7e-3775.47uncharacterized protein LOC111441680 [Cucurbita moschata][more]
KAG7018111.11.7e-3774.53hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_011466987.12.8e-2464.71PREDICTED: uncharacterized protein LOC101292722 [Fragaria vesca subsp. vesca][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J0R94.3e-3976.42uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415... [more]
A0A0A0LD549.7e-3978.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1[more]
A0A6J1F2W08.2e-3875.47uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC1114416... [more]
A0A2P6RV402.3e-2467.06Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0131671 PE=4... [more]
A0A6J1CR015.1e-2467.07uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT5G43150.13.3e-0735.90unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..102
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 3..89
NoneNo IPR availablePANTHERPTHR33181:SF19OSJNBA0041A02.21-LIKE PROTEINcoord: 3..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016214.1MS016214.1mRNA