MS015685 (gene) Bitter gourd (TR) v1

Overview


Name	MS015685
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	TLC domain-containing protein
Location	scaffold983: 262034 .. 265598 (-)
RNA-Seq Expression	MS015685
Synteny	MS015685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTAGGAGAGTGCCGAAGGAGAAGAGCAGGGCAGGGAGCTTCTTCTCGGCGACATTGGTGCTTTGGATTGTGTCTATTTGGTTCGAAATTCTGTTTTACCGGCGCTCTGAGCTGCTCTACGTCGTGTTCGGAGCTCTGTTCTACCAATCCGCCAACTGGACCGTTCGAGCTCTTGTTTCCAAGGATCCTCTCTTTGTCAACACCTCTGTTTCTCTCCTTCACTCCACTATCACCTCTGCCTCAGGTTCTTTTTCCTTTTCTTTTTGAATTCTACTTCTCTGTTTGGGGGGTCTTATGCGCCTTGAATTTGATGTTTTTTTTACTTCTACGCGACTGCCTTACTGTTTGATTCTTTGTTTGAGGGTCACTTCTTCTGCTTGGTTGAGGTTTTTCCTTAATGGAATTAGAAACTTTATTTGCACTATAAGAATTAAGAAAGACTGATAGTAGGTTGTGTTTCGTTGATGTGAGTGCTGTGTTGTGAATAGTGTCTATTATTAGTTGTTACTGGTGGCTAAGAGTTTGTAAGTGTGGTGTTGCTTCTGGGAATAGGGATGTGGTTCTTTGCGTATGCTATAGTGGGTTGTTTCAGCTGATGAGCTAGCACAAATAATTTTCTGGGAGTATTTCCAGCACCAAGAATTTTAAGTTGTTCTTTACTCTTGCTAAATTACTTTGGTTAAACTATTAATCTAATTTTGAACCTTGAGCAATGAGTGTATTTAGTTCTTAAACTTTTAAAAGTTCCAATTACATAATTTAATTTATTGAACAGTTCATTAGTCTATCATGTTGGCTTCCACATCATATCAACTCAGCTAAAGTTAATTTTCTATGTGATGATGGCGAAAACTAAATTAAAGCATAACTTAAAAGTTCAAAGACATAATCTTAAAGTCTTTAAAGCTTGAGACTAAACAAACGTATGCTTCAAGAACTATCTTGCTCTCTCCTCTCTTATGTGTCACCCCCTTGTTTTGGGGGATTCTTTTGTCCCATGTTTTCTTCGAGTGTAAGTAATGTACAAGGAAAAAAGTGTAAAGAAACTGTGGATGTTGCTGTTCGTTCTGGTTTAACAGGATATCAAAATAAACCAAGTTTAAATTAGTAGACAAGAAAAGGAAGGTTGCAAATAGATAAATAAATAAAGTGTTGGAGATAATGGATTTATTTTAGGAAAATAGAGCTTTAGTTGTTTTCCCAGATCAATCTAGGAAAAAACATCGGGAAGGGCTATCCATATGACCTGTTAATTCTATCATCACCTCAGTATGTTGCTTAATCCAAACAAGTTGGTATCATTTTGCTCTGACTACATACAGTTCTTCCAGACTGACCTAGGAAATTTTCGAGCCCCTCTTTTCTCATTCCCTATCAATTCGCTTGTCTCCTCGTGCTTCTTCCTTTTTGTCAATCATTGCATAGTATGCTTACTACATAAGTTAAAAGGGGGAAAAATTTATTGTTGGGTTGTGATAGAAACCAAATAGCTGAAATAGATTGAAAGATAAAATGATAAAAGGACTAAAATAATTCTCAAGTCATTCGAGGTGCTTAGACCCTCCCGTCTTGGAATCACCCAAGCATAAACCACACTAAACAATTGTCTACCTCATCCCTTTCCCCTCACTCTATTTATAACAAACCCCTTATATCTAATTTCTTAGCTAATTACTAACATACCCTTACTATTCTATTAATATCCCTAATTACCAGACATTCTTATCAGGTTGATGGAGATAACAAAAACTGGGAAGATTTTGTAATATTAGTATGCTCATCAAAAGAGCCTGGTGTTTTTTGAGATTAAAGGGTTGTTTGTCTGACGAAGAATATGTCTAATATTTGTGAATGATGTTAGCGATATTCTTCGGGTTCTATTAGAAACTTCTTTATATTATTGAAGGTTGAGGAAGTGAGGTTCAGAGCCTAAAGGTAAACCAACTTTTTGATGGTCAGGTTTGATTAAAGGCATGGTTACTTCCTTTTGTTCATGATAGGAAGACTGCTAGGTTGGCCTTGGTTGCCACTTGATTCTGACCCAAAGCCCTACGATGGTTCAAATGTTTTCCGAATTTCAATAGTTCATTCTATTCTTTGGCCGTGTAGTTTAGTTATCTTTACTTGATGCAACGATTTCATTGCAGTGCTTTTCATTTTGGTGAGTCAGTGGTTAAGTTATGGTTCGCACGGGATGTTTGAGCATTCACAATTGGTTGGAGGGACATGGTCGGGGGCTTATGCCGCTTTGTGCTTCTCATGCGGTTATTTTGCGTATGATCAGTGGGATATGTTGCTGTACCAATTATATAGCGGCTGGATCCCTGCAATCTTGGTTCATCATCTGGTCCTCCTCATTTGCTTTACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCATTCTCACTCTCATTTGTGAGGTATGCATTAGTTTCTCCTTGCAAGATGTGTCCTATGAATATGCTGCTTTCTTTCTGTTTATGATCCGTGTCGGATTGTTTATGATCCTTGTCAGATATAAGTATTTCTGTTCTGCCATTGACATGAATAGATACTTAGATGAAGAGTTTATTGAATTTGACATAGCCACAAAGATGAGGTTTAAGTATTTTAGGTCCTTTTTGGATTTATCTCACTCCTCCAAAAAGAAGTAATGAAAGATGCTTAATCAAAGTATTTGTGGCTCCAACGCCTCATCTTAATCTCTCATGGCACACACTTTCTCTAACTTTTTTCTCTACATAATCTCTCTCACTAACTTCTCTTTCCATCCATCCTTTCTCATCAATCTTTCTTTACACAATTTCTGTCACTAATTTTAGCTTTTCTCTACGCACATTTTCTCTCACTAGCTTCTCTTTTATACTTTCTATTACTAGCGTCTCTTGTTGTACACACTTCTCTCACTAGTCCATCTTTATGCAATTTCTTTCACTAGTCTCTCTCTACACACTATTTATTACTAGCCTCTCTCATTGTATACACTTCTCTTACTAGTCTATATTTACACTGCTATTTCTCGCTTGTAATTGCTCACACATACACCCTATTTATGTAATGCTCAAATCAAGTAGAACATGTCTTCTTAATAGTTATCTTAGTTAAGCAAATGCAAGAGAGCGAGTTCATAGTTTCTTTGCACGTTGGGAAGGACTCTGTAGGCAGATCAATTTTTTCCTGTCATATTTTACTTCCAATTCTTGATATGCAAGACTGAAACAAGAATCAATATGGTGTTACAGTTGCATTCTATCTTTCTCCACGTAAGGCGATTGCGGAGGATGGCTGGTGTTCGTGACGTGAAGAGCATTGTCGTGAAAGTCGAATGGATTCTGAACTGGCTAACGTTTGTTTTCGCAAGGGTTGTACCGCACATTCTCATCACTGCTAAACTTGTCGTGGATGCTTCCAAGTTCGATAGAGGCGTAGAGCTGCCGCTTGCACTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTTCTTGGCATTGATCTCATCAACGCTGTAAAGAAAGAGAGTAAGTACCAGAAAAAAGATCACCCTCGTCGTGAA

mRNA sequence

ATGGCGGGTAGGAGAGTGCCGAAGGAGAAGAGCAGGGCAGGGAGCTTCTTCTCGGCGACATTGGTGCTTTGGATTGTGTCTATTTGGTTCGAAATTCTGTTTTACCGGCGCTCTGAGCTGCTCTACGTCGTGTTCGGAGCTCTGTTCTACCAATCCGCCAACTGGACCGTTCGAGCTCTTGTTTCCAAGGATCCTCTCTTTGTCAACACCTCTGTTTCTCTCCTTCACTCCACTATCACCTCTGCCTCAGTGCTTTTCATTTTGGTGAGTCAGTGGTTAAGTTATGGTTCGCACGGGATGTTTGAGCATTCACAATTGGTTGGAGGGACATGGTCGGGGGCTTATGCCGCTTTGTGCTTCTCATGCGGTTATTTTGCGTATGATCAGTGGGATATGTTGCTGTACCAATTATATAGCGGCTGGATCCCTGCAATCTTGGTTCATCATCTGGTCCTCCTCATTTGCTTTACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCATTCTCACTCTCATTTGTGAGTTGCATTCTATCTTTCTCCACGTAAGGCGATTGCGGAGGATGGCTGGTGTTCGTGACGTGAAGAGCATTGTCGTGAAAGTCGAATGGATTCTGAACTGGCTAACGTTTGTTTTCGCAAGGGTTGTACCGCACATTCTCATCACTGCTAAACTTGTCGTGGATGCTTCCAAGTTCGATAGAGGCGTAGAGCTGCCGCTTGCACTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTTCTTGGCATTGATCTCATCAACGCTGTAAAGAAAGAGAGTAAGTACCAGAAAAAAGATCACCCTCGTCGTGAA

Coding sequence (CDS)

ATGGCGGGTAGGAGAGTGCCGAAGGAGAAGAGCAGGGCAGGGAGCTTCTTCTCGGCGACATTGGTGCTTTGGATTGTGTCTATTTGGTTCGAAATTCTGTTTTACCGGCGCTCTGAGCTGCTCTACGTCGTGTTCGGAGCTCTGTTCTACCAATCCGCCAACTGGACCGTTCGAGCTCTTGTTTCCAAGGATCCTCTCTTTGTCAACACCTCTGTTTCTCTCCTTCACTCCACTATCACCTCTGCCTCAGTGCTTTTCATTTTGGTGAGTCAGTGGTTAAGTTATGGTTCGCACGGGATGTTTGAGCATTCACAATTGGTTGGAGGGACATGGTCGGGGGCTTATGCCGCTTTGTGCTTCTCATGCGGTTATTTTGCGTATGATCAGTGGGATATGTTGCTGTACCAATTATATAGCGGCTGGATCCCTGCAATCTTGGTTCATCATCTGGTCCTCCTCATTTGCTTTACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCATTCTCACTCTCATTTGTGAGTTGCATTCTATCTTTCTCCACGTAAGGCGATTGCGGAGGATGGCTGGTGTTCGTGACGTGAAGAGCATTGTCGTGAAAGTCGAATGGATTCTGAACTGGCTAACGTTTGTTTTCGCAAGGGTTGTACCGCACATTCTCATCACTGCTAAACTTGTCGTGGATGCTTCCAAGTTCGATAGAGGCGTAGAGCTGCCGCTTGCACTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTTCTTGGCATTGATCTCATCAACGCTGTAAAGAAAGAGAGTAAGTACCAGAAAAAAGATCACCCTCGTCGTGAA

Protein sequence

MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRALVSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE

Homology

[Close]

BLAST of MS015685 vs. NCBI nr
Match: XP_022141652.1 (TLC domain-containing protein 2 isoform X2 [Momordica charantia])

HSP 1 Score: 540.8 bits (1392), Expect = 6.9e-150
Identity = 278/280 (99.29%), Postives = 279/280 (99.64%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL
Sbjct: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF
Sbjct: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD KSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL
Sbjct: 181 FLHVRRLRRMAGVRDAKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLALSGMAGMNLLNAFLGIDLINAVKKESKYQK+DHPRRE
Sbjct: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKRDHPRRE 280

[Close]

BLAST of MS015685 vs. NCBI nr
Match: XP_022141651.1 (TLC domain-containing protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 524.2 bits (1349), Expect = 6.7e-145
Identity = 278/312 (89.10%), Postives = 279/312 (89.42%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL
Sbjct: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSAS--------------------------------VLFIL 120
           VSKDPLFVNTSVSLLHSTITSAS                                VLFIL
Sbjct: 61  VSKDPLFVNTSVSLLHSTITSASGLIKGMVTSFCSIGRLLGWPWLPLDSDPKPYDVLFIL 120

Query: 121 VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH 180
           VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH
Sbjct: 121 VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH 180

Query: 181 HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRDVKSIVVKVEWILN 240
           HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRD KSIVVKVEWILN
Sbjct: 181 HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRDAKSIVVKVEWILN 240

Query: 241 WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE 281
           WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE
Sbjct: 241 WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE 300

[Close]

BLAST of MS015685 vs. NCBI nr
Match: XP_038884583.1 (TLC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 461.8 bits (1187), Expect = 4.1e-126
Identity = 238/280 (85.00%), Postives = 255/280 (91.07%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR V KEK RAGSFFSATLVLW VS+ FEILF RR ELLYVVFGALFYQSAN  +R L
Sbjct: 1   MAGRTVLKEKRRAGSFFSATLVLWSVSLCFEILFDRRFELLYVVFGALFYQSANSAIRFL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           VSKDPL VNTSVSLLHSTITSASVLF+LV++WLSYGS G+FEHSQL GGTW  AYAALCF
Sbjct: 61  VSKDPLLVNTSVSLLHSTITSASVLFVLVNRWLSYGSEGIFEHSQLFGGTWPWAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDML Y LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICE+HSI
Sbjct: 121 SCGYFAYDQWDMLQYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICEMHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD KS++VKVEWILNWLTFVFAR VPHILITAKL++DASKFD+G+EL
Sbjct: 181 FLHVRRLRRMAGVRDAKSVIVKVEWILNWLTFVFARFVPHILITAKLIMDASKFDKGIEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLALSGMAGMNLLNA LG+DL++AV+KES YQK DH   E
Sbjct: 241 PLALSGMAGMNLLNALLGMDLLSAVRKESYYQKTDHSHHE 280

[Close]

BLAST of MS015685 vs. NCBI nr
Match: XP_023550889.1 (TLC domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 7.7e-125
Identity = 234/280 (83.57%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR + KEKSRAGSFFSATLVLW VS+WFEILF RR ELLY+VFGALFYQSAN  +R L
Sbjct: 1   MAGRTMLKEKSRAGSFFSATLVLWTVSLWFEILFDRRFELLYLVFGALFYQSANSAIRFL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           +SK+PL VNT+VSLLHS ITSASVLF+LV++WLS+GS GMFEHSQL GGTW  AYAALCF
Sbjct: 61  ISKEPLVVNTAVSLLHSIITSASVLFVLVNRWLSHGSDGMFEHSQLFGGTWPWAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDML Y+LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLQYRLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD +S +VKVEW LNWLTF+FAR VPHILITAKL++DASKFD+GVEL
Sbjct: 181 FLHVRRLRRMAGVRDAESFIVKVEWTLNWLTFIFARFVPHILITAKLIMDASKFDKGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLAL GMA MNLLN FLGIDL NAVKKES YQK DH   E
Sbjct: 241 PLALFGMAAMNLLNVFLGIDLFNAVKKESNYQKNDHLHNE 280

[Close]

BLAST of MS015685 vs. NCBI nr
Match: XP_022939854.1 (TLC domain-containing protein 2 [Cucurbita moschata] >KAG6578966.1 TLC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016488.1 TLC domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.1 bits (1172), Expect = 2.2e-124
Identity = 234/280 (83.57%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR V KEKSRAGSFFSATLVLW VS+WFEILF RR ELLY+VFGALFYQSAN  +R L
Sbjct: 1   MAGRTVLKEKSRAGSFFSATLVLWTVSLWFEILFDRRFELLYLVFGALFYQSANSAIRFL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           +SK+PL VNT+VSLLHS ITSASVLF+L ++WLS+GS GMFEHSQL GGTW  AYAALCF
Sbjct: 61  ISKEPLVVNTAVSLLHSIITSASVLFVLANRWLSHGSDGMFEHSQLFGGTWPWAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDML Y+LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLQYRLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD +S +VKVEW LNWLTF FAR VPHILITAKL++DASKFD+GVEL
Sbjct: 181 FLHVRRLRRMAGVRDAESFIVKVEWTLNWLTFTFARFVPHILITAKLIMDASKFDKGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLAL GMA MNLLN FLGIDL NAVKKES YQK DH   E
Sbjct: 241 PLALFGMAAMNLLNVFLGIDLFNAVKKESNYQKNDHLHHE 280

[Close]

BLAST of MS015685 vs. ExPASy Swiss-Prot
Match: A8WGS4 (TLC domain-containing protein 2 OS=Danio rerio OX=7955 GN=tlcd2 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-06
Identity = 58/217 (26.73%), Postives = 105/217 (48.39%), Query Frame = 0


Query: 69  NTSVSLLHSTITSA-SVLFILVSQWLS---YGSHGMFEHSQLVGGTWSGAYAALCFSCGY 128
           N S S +HS IT   SVL   +   ++     +H +F H            A +  S GY
Sbjct: 42  NISTSFVHSLITGVWSVLCFCMHPQMAEDLIETHSVFSH------------ALVSVSIGY 101

Query: 129 FAYDQWDMLLYQ-LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLH 188
           F YD  DM++ Q +   W   +L HH+V++ CF +++     + + ++ L+ E++S+FLH
Sbjct: 102 FIYDFLDMVINQKIIHSW--ELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLH 161

Query: 189 VRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVELPLA 248
           +R++ RMA +   KS   +V  ++N  T+V  R+     +T  LV++           + 
Sbjct: 162 LRQVLRMANL--AKSTFYRVNSMINLGTYVVFRINTLAWMTRWLVLNRDLIPL-FSYTIG 221

Query: 249 LSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
             G+A M  +N  L   L+ +   ++  +K+    +E
Sbjct: 222 SVGLAIMTAMNIVLFYRLMRSDFMKASREKELRKEKE 241

[Close]

BLAST of MS015685 vs. ExPASy TrEMBL
Match: A0A6J1CKF5 (TLC domain-containing protein 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011955 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 3.3e-150
Identity = 278/280 (99.29%), Postives = 279/280 (99.64%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL
Sbjct: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF
Sbjct: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD KSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL
Sbjct: 181 FLHVRRLRRMAGVRDAKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLALSGMAGMNLLNAFLGIDLINAVKKESKYQK+DHPRRE
Sbjct: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKRDHPRRE 280

[Close]

BLAST of MS015685 vs. ExPASy TrEMBL
Match: A0A6J1CJV1 (TLC domain-containing protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011955 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.2e-145
Identity = 278/312 (89.10%), Postives = 279/312 (89.42%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL
Sbjct: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSAS--------------------------------VLFIL 120
           VSKDPLFVNTSVSLLHSTITSAS                                VLFIL
Sbjct: 61  VSKDPLFVNTSVSLLHSTITSASGLIKGMVTSFCSIGRLLGWPWLPLDSDPKPYDVLFIL 120

Query: 121 VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH 180
           VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH
Sbjct: 121 VSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYDQWDMLLYQLYSGWIPAILVH 180

Query: 181 HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRDVKSIVVKVEWILN 240
           HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRD KSIVVKVEWILN
Sbjct: 181 HLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLRRMAGVRDAKSIVVKVEWILN 240

Query: 241 WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE 281
           WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE
Sbjct: 241 WLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMAGMNLLNAFLGIDLINAVKKE 300

[Close]

BLAST of MS015685 vs. ExPASy TrEMBL
Match: A0A6J1FID3 (TLC domain-containing protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111445599 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.1e-124
Identity = 234/280 (83.57%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR V KEKSRAGSFFSATLVLW VS+WFEILF RR ELLY+VFGALFYQSAN  +R L
Sbjct: 1   MAGRTVLKEKSRAGSFFSATLVLWTVSLWFEILFDRRFELLYLVFGALFYQSANSAIRFL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           +SK+PL VNT+VSLLHS ITSASVLF+L ++WLS+GS GMFEHSQL GGTW  AYAALCF
Sbjct: 61  ISKEPLVVNTAVSLLHSIITSASVLFVLANRWLSHGSDGMFEHSQLFGGTWPWAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDML Y+LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLQYRLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD +S +VKVEW LNWLTF FAR VPHILITAKL++DASKFD+GVEL
Sbjct: 181 FLHVRRLRRMAGVRDAESFIVKVEWTLNWLTFTFARFVPHILITAKLIMDASKFDKGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLAL GMA MNLLN FLGIDL NAVKKES YQK DH   E
Sbjct: 241 PLALFGMAAMNLLNVFLGIDLFNAVKKESNYQKNDHLHHE 280

[Close]

BLAST of MS015685 vs. ExPASy TrEMBL
Match: A0A6J1K0R9 (TLC domain-containing protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111489133 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.4e-124
Identity = 234/280 (83.57%), Postives = 251/280 (89.64%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR V KE+SRAGSFFSATLVLW VS+WFEILF RR ELLY+VFGALFYQSAN  +R L
Sbjct: 1   MAGRTVLKEESRAGSFFSATLVLWTVSLWFEILFDRRFELLYLVFGALFYQSANSAIRFL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCF 120
           +SK+PL VNT+VSLLHS ITSASVLFILV++WLS+G  GMFEHSQL GGTW  AYAALCF
Sbjct: 61  ISKEPLVVNTAVSLLHSIITSASVLFILVNRWLSHGLDGMFEHSQLFGGTWPWAYAALCF 120

Query: 121 SCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180
           SCGYFAYDQWDML Y+LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI
Sbjct: 121 SCGYFAYDQWDMLQYRLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSI 180

Query: 181 FLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVEL 240
           FLHVRRLRRMAGVRD +S +VKVEW LNWLTF+FAR VPHILITAKL++DASKFD+GVEL
Sbjct: 181 FLHVRRLRRMAGVRDAESFIVKVEWTLNWLTFIFARFVPHILITAKLIMDASKFDKGVEL 240

Query: 241 PLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           PLAL GMA MNLLN FLGIDL NAVKKES YQK DH   E
Sbjct: 241 PLALFGMAAMNLLNVFLGIDLFNAVKKESNYQKNDHFHHE 280

[Close]

BLAST of MS015685 vs. ExPASy TrEMBL
Match: A0A1S3CRX5 (TLC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103504058 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 2.0e-123
Identity = 233/282 (82.62%), Postives = 251/282 (89.01%), Query Frame = 0


Query: 1   MAGRRVPKEKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRAL 60
           MAGR + KEKSRAGSFFSATL+LW VS+WFEILF RR  LLYVVFGALFYQSAN ++R L
Sbjct: 1   MAGRTLLKEKSRAGSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRVL 60

Query: 61  VSKDPLFVNTSVSLLHSTITSASVLFILVSQWLSY--GSHGMFEHSQLVGGTWSGAYAAL 120
           VSKDPL VNTSVSLLHS +TSASVLF+LV++WLSY   S GMFEHSQL GGTW  AYAAL
Sbjct: 61  VSKDPLLVNTSVSLLHSIVTSASVLFVLVNRWLSYDSSSEGMFEHSQLFGGTWPWAYAAL 120

Query: 121 CFSCGYFAYDQWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELH 180
           CFSCGYFAYDQWDML Y LYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTL+CE+H
Sbjct: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLVCEMH 180

Query: 181 SIFLHVRRLRRMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGV 240
           SIFLHVRRLRRMAGVRD KSI+VKVEWILNWLTFVFAR VPHILIT KL++DA KFD+GV
Sbjct: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDAYKFDKGV 240

Query: 241 ELPLALSGMAGMNLLNAFLGIDLINAVKKESKYQKKDHPRRE 281
           ELPLALSGM GMNLLNA LGIDL+NAV+KES Y+K D    E
Sbjct: 241 ELPLALSGMTGMNLLNALLGIDLLNAVRKESNYKKTDDTHHE 282

[Close]

BLAST of MS015685 vs. TAIR 10
Match: AT1G21790.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 369.4 bits (947), Expect = 2.6e-102
Identity = 184/265 (69.43%), Postives = 224/265 (84.53%), Query Frame = 0


Query: 9   EKSRAGSFFSATLVLWIVSIWFEILFYRRSELLYVVFGALFYQSANWTVRALVSKDPLFV 68
           +K+ AG FF ATL+LW+VS+ FEI F  R+ELL+V+ G  F+Q  NW VR+ +S+DP+FV
Sbjct: 12  KKNGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVVRSWISRDPIFV 71

Query: 69  NTSVSLLHSTITSASVLFILVSQWLSYGSHGMFEHSQLVGGTWSGAYAALCFSCGYFAYD 128
           NTSVSLLHS ITSASV+FIL++Q L+ G   MF+HS+LVGGTW  AY ALCFSCGYFAYD
Sbjct: 72  NTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPALCFSCGYFAYD 131

Query: 129 QWDMLLYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRRLR 188
           QWDML Y+LYSG IP+ILVHHLVLL+CFTLALYRNVTINYLILTLICE+HSIFLHVR+LR
Sbjct: 132 QWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEMHSIFLHVRKLR 191

Query: 189 RMAGVRDVKSIVVKVEWILNWLTFVFARVVPHILITAKLVVDASKFDRGVELPLALSGMA 248
           RMAG+RD  + +VK+EW+LNW  FVFAR +PHILIT KL+ DA KF +GVELPLALSGMA
Sbjct: 192 RMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKGVELPLALSGMA 251

Query: 249 GMNLLNAFLGIDLINAVKKESKYQK 274
           GMN+LN  LG+DL +A ++E  +++
Sbjct: 252 GMNILNVGLGLDLFHAFRRERSHRR 276

The following BLAST results are available for this feature:

BLAST of MS015685 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141652.1	6.9e-150	99.29	TLC domain-containing protein 2 isoform X2 [Momordica charantia]	[more]
XP_022141651.1	6.7e-145	89.10	TLC domain-containing protein 2 isoform X1 [Momordica charantia]	[more]
XP_038884583.1	4.1e-126	85.00	TLC domain-containing protein 2 [Benincasa hispida]	[more]
XP_023550889.1	7.7e-125	83.57	TLC domain-containing protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022939854.1	2.2e-124	83.57	TLC domain-containing protein 2 [Cucurbita moschata] >KAG6578966.1 TLC domain-co...	[more]

BLAST of MS015685 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8WGS4	2.6e-06	26.73	TLC domain-containing protein 2 OS=Danio rerio OX=7955 GN=tlcd2 PE=2 SV=1	[more]

BLAST of MS015685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKF5	3.3e-150	99.29	TLC domain-containing protein 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1CJV1	3.2e-145	89.10	TLC domain-containing protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1FID3	1.1e-124	83.57	TLC domain-containing protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111445599 PE...	[more]
A0A6J1K0R9	2.4e-124	83.57	TLC domain-containing protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111489133 PE=4...	[more]
A0A1S3CRX5	2.0e-123	82.62	TLC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103504058 PE=4 SV=...	[more]

BLAST of MS015685 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21790.1	2.6e-102	69.43	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 62..267 e-value: 1.7E-30 score: 117.3
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 67..258 e-value: 1.9E-18 score: 66.9
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 62..270 score: 15.258039
None	No IPR available	PANTHER	PTHR13439:SF4	TLC DOMAIN-CONTAINING PROTEIN FLD-1	coord: 16..277
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 16..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015685.1	MS015685.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane