MS014792 (gene) Bitter gourd (TR) v1

Overview
NameMS014792
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold493: 128023 .. 128286 (+)
RNA-Seq ExpressionMS014792
SyntenyMS014792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCCCCGAACTGGTGTCTGACGTGTAGAAGGAGAGAAAAGTGCACTAAGTATGTTTTCTTTCTCCACCACATCGCTGCTTCTTGTTGGTCTGAACTTTTTCAAGCCTTTAATATTCGTTGGTGCTTCCCCATGCGAAGCTCTGATTCATTTAAACAGCTCATTTCTGGTACCCATTTAAGGGAACAAGCTAGAATTGTAAAAATTACAATGTGGTGGTGGCTTTGCTTTAAATTGTGGATTGAAAGAAACAAAAGAATTTTT

mRNA sequence

CTCCCCCCGAACTGGTGTCTGACGTGTAGAAGGAGAGAAAAGTGCACTAAGTATGTTTTCTTTCTCCACCACATCGCTGCTTCTTGTTGGTCTGAACTTTTTCAAGCCTTTAATATTCGTTGGTGCTTCCCCATGCGAAGCTCTGATTCATTTAAACAGCTCATTTCTGGTACCCATTTAAGGGAACAAGCTAGAATTGTAAAAATTACAATGTGGTGGTGGCTTTGCTTTAAATTGTGGATTGAAAGAAACAAAAGAATTTTT

Coding sequence (CDS)

CTCCCCCCGAACTGGTGTCTGACGTGTAGAAGGAGAGAAAAGTGCACTAAGTATGTTTTCTTTCTCCACCACATCGCTGCTTCTTGTTGGTCTGAACTTTTTCAAGCCTTTAATATTCGTTGGTGCTTCCCCATGCGAAGCTCTGATTCATTTAAACAGCTCATTTCTGGTACCCATTTAAGGGAACAAGCTAGAATTGTAAAAATTACAATGTGGTGGTGGCTTTGCTTTAAATTGTGGATTGAAAGAAACAAAAGAATTTTT

Protein sequence

LPPNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISGTHLREQARIVKITMWWWLCFKLWIERNKRIF
Homology
BLAST of MS014792 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 1   LPPNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISG-TH 60
           L P++C  C +  +   ++FF  + A+ CW+ LF  FN+ WCF +++ D+  QL+ G  H
Sbjct: 68  LLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPH 127

Query: 61  LREQARIVKITMWWWLCFKLWIERNKRIF 89
           L    R + + +   L  +LW ERN R+F
Sbjct: 128 LSSSVRFLWLNVVKALLSELWFERNSRLF 156

BLAST of MS014792 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 3   PNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISGTHLRE 62
           P+ C  C +  K   ++F    +++  W  +F  FN+ W F    S S  QL+SG++L +
Sbjct: 254 PSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGSNLPK 313

Query: 63  QARIVKITMWWWLCFKLWIERNKRIF 89
             RI+   +   L  ++WIERN+RIF
Sbjct: 314 TPRIIWEILSKALLIEIWIERNQRIF 339

BLAST of MS014792 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 3   PNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISGTHLRE 62
           P+ C  C +  K   ++F    +++  W  +F  FN+ W F    S S  QL+SG++L +
Sbjct: 254 PSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGSNLPK 313

Query: 63  QARIVKITMWWWLCFKLWIERNKRIF 89
             RI+   +   L  ++WIERN+RIF
Sbjct: 314 TPRIIWEILSKALLIEIWIERNQRIF 339

BLAST of MS014792 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 1   LPPNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISG-TH 60
           L P++C  C +  +   ++FF  + A+ CW+ LF  FN+ WCF +++ D+  QL+ G  H
Sbjct: 68  LLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPH 127

Query: 61  LREQARIVKITMWWWLCFKLWIERNKRIF 89
           L    R + + +   L  +LW ERN R+F
Sbjct: 128 LSSSVRFLWLNVVKALLSELWFERNSRLF 156

BLAST of MS014792 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 3   PNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISGTHLRE 62
           P+ C  C +  K   ++F    +++  W  +F  FN+ W F    S S  QL+SG++L +
Sbjct: 254 PSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGSNLPK 313

Query: 63  QARIVKITMWWWLCFKLWIERNKRIF 89
             RI+   +   L  ++WIERN+RIF
Sbjct: 314 TPRIIWEILSKALLIEIWIERNQRIF 339

BLAST of MS014792 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 3   PNWCLTCRRREKCTKYVFFLHHIAASCWSELFQAFNIRWCFPMRSSDSFKQLISGTHLRE 62
           P+ C  C +  K   ++F    +++  W  +F  FN+ W F    S S  QL+SG++L +
Sbjct: 254 PSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGSNLPK 313

Query: 63  QARIVKITMWWWLCFKLWIERNKRIF 89
             RI+   +   L  ++WIERN+RIF
Sbjct: 314 TPRIIWEILSKALLIEIWIERNQRIF 339

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153214.12.4e-0834.83uncharacterized protein LOC111020765 [Momordica charantia][more]
KAA0035739.14.3e-0533.72hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa][more]
TYK21876.14.3e-0533.72hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIE21.2e-0834.83uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5A7T2Y02.1e-0533.72zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3DE602.1e-0533.72zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014792.1MS014792.1mRNA