MS014663 (gene) Bitter gourd (TR) v1

Overview


Name	MS014663
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Formamidopyrimidine-DNA glycosylase-like
Location	scaffold1315: 66195 .. 66356 (+)
RNA-Seq Expression	MS014663
Synteny	MS014663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATGCTATACTTCAATAATCTCTTTCCTACCATGGCACGCAAATTCCTATCGTGTCCCAAATCACATTCCGTGAATCAAAAGGGGAAGCGTACTCATCCATCAGCTCCTCCCATAGATCGGTGCGGTTTTACGGAGCATCTAAGCACAATTTACTTGCCT

mRNA sequence

CTTATGCTATACTTCAATAATCTCTTTCCTACCATGGCACGCAAATTCCTATCGTGTCCCAAATCACATTCCGTGAATCAAAAGGGGAAGCGTACTCATCCATCAGCTCCTCCCATAGATCGGTGCGGTTTTACGGAGCATCTAAGCACAATTTACTTGCCT

Coding sequence (CDS)

CTTATGCTATACTTCAATAATCTCTTTCCTACCATGGCACGCAAATTCCTATCGTGTCCCAAATCACATTCCGTGAATCAAAAGGGGAAGCGTACTCATCCATCAGCTCCTCCCATAGATCGGTGCGGTTTTACGGAGCATCTAAGCACAATTTACTTGCCT

Protein sequence

LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIYLP

Homology

[Close]

BLAST of MS014663 vs. NCBI nr
Match: KAF3973006.1 (hypothetical protein CMV_003550 [Castanea mollissima])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
           L+LYF +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 100 LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 151

[Close]

BLAST of MS014663 vs. NCBI nr
Match: KAB8477477.1 (hypothetical protein FH972_025343 [Carpinus fangiana])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
          L+LYF +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 42 LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 93

[Close]

BLAST of MS014663 vs. NCBI nr
Match: KAG6621683.1 (hypothetical protein I3842_Q010000 [Carya illinoinensis])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
           L+LYF +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 71  LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 122

[Close]

BLAST of MS014663 vs. NCBI nr
Match: KAB1226671.1 (hypothetical protein CJ030_MR1G008480 [Morella rubra])

HSP 1 Score: 82.8 bits (203), Expect = 9.9e-13
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
           L+LYF +LFPT ARK  SCP+SHSVN+KGK  HPSAP +DRCGFT+ LST++
Sbjct: 71  LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRLSTVH 122

[Close]

BLAST of MS014663 vs. NCBI nr
Match: PPR89037.1 (hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetical protein ES332_D04G101500v1 [Gossypium tomentosum])

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
          L+LY  +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 28 LVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 79

[Close]

BLAST of MS014663 vs. ExPASy TrEMBL
Match: A0A5N6L0R1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
          L+LYF +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 42 LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 93

[Close]

BLAST of MS014663 vs. ExPASy TrEMBL
Match: A0A7N2MTH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
           L+LYF +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 100 LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 151

[Close]

BLAST of MS014663 vs. ExPASy TrEMBL
Match: A0A6A1WN45 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
           L+LYF +LFPT ARK  SCP+SHSVN+KGK  HPSAP +DRCGFT+ LST++
Sbjct: 71  LVLYFGDLFPTEARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRLSTVH 122

[Close]

BLAST of MS014663 vs. ExPASy TrEMBL
Match: A0A5D2LBI2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
          L+LY  +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 28 LVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 79

[Close]

BLAST of MS014663 vs. ExPASy TrEMBL
Match: A0A2P5WDA1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  LMLYFNNLFPTMARKFLSCPKSHSVNQKGKRTHPSAPPIDRCGFTEHLSTIY 53
          L+LY  +LFPT ARK  SCP+SHSVN+KGK THPSAP +DRCGFT+ LST++
Sbjct: 28 LVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVH 79

The following BLAST results are available for this feature:

BLAST of MS014663 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3973006.1	2.6e-13	71.15	hypothetical protein CMV_003550 [Castanea mollissima]	[more]
KAB8477477.1	2.6e-13	71.15	hypothetical protein FH972_025343 [Carpinus fangiana]	[more]
KAG6621683.1	2.6e-13	71.15	hypothetical protein I3842_Q010000 [Carya illinoinensis]	[more]
KAB1226671.1	9.9e-13	69.23	hypothetical protein CJ030_MR1G008480 [Morella rubra]	[more]
PPR89037.1	2.2e-12	69.23	hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetic...	[more]

BLAST of MS014663 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6L0R1	1.3e-13	71.15	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1	[more]
A0A7N2MTH6	1.3e-13	71.15	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1WN45	4.8e-13	69.23	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1	[more]
A0A5D2LBI2	1.1e-12	69.23	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 P...	[more]
A0A2P5WDA1	1.1e-12	69.23	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV...	[more]

BLAST of MS014663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014663.1	MS014663.1	mRNA