MS014549 (gene) Bitter gourd (TR) v1

Overview
NameMS014549
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S4
Locationscaffold553: 818395 .. 818466 (-)
RNA-Seq ExpressionMS014549
SyntenyMS014549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTTTTTCATGTGGATTTACCCATTACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTT

mRNA sequence

CCCCTTTTTCATGTGGATTTACCCATTACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTT

Coding sequence (CDS)

CCCCTTTTTCATGTGGATTTACCCATTACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTT

Protein sequence

PLFHVDLPITEMHRGTERTSYIPF
Homology
BLAST of MS014549 vs. NCBI nr
Match: QHU79916.1 (ribosomal protein S4 [Pediomelum digitatum] >QHU79917.1 ribosomal protein S4 [Pediomelum tenuiflorum] >QHU79918.1 ribosomal protein S4 [Pediomelum argophyllum] >QHU79922.1 ribosomal protein S4 [Pediomelum esculentum] >QHU79919.1 ribosomal protein S4 [Pediomelum digitatum])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. NCBI nr
Match: YP_009709883.1 (ribosomal protein S4 [Phaseolus vulgaris] >QFI36096.1 ribosomal protein S4 [Phaseolus vulgaris])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. NCBI nr
Match: KAG4906037.1 (hypothetical protein JHK86_057284 [Glycine max] >KAG4906048.1 hypothetical protein JHK86_057295 [Glycine max] >KAG4950667.1 hypothetical protein JHK86_043906 [Glycine max])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. NCBI nr
Match: YP_007516900.1 (ribosomal protein S4 [Glycine max] >YP_009532841.1 ribosomal protein S4 [Glycine soja] >AFR34319.1 ribosomal protein S4 [Glycine max] >AYD72989.1 ribosomal protein S4 [Glycine soja] >KAG4906094.1 hypothetical protein JHK85_058285 [Glycine max] >KAG4914302.1 hypothetical protein JHK87_051859 [Glycine soja] >KAG5070557.1 hypothetical protein JHK84_057414 [Glycine max])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. NCBI nr
Match: QHU79921.1 (ribosomal protein S4 [Ladeania lanceolata])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.3e-06
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          P F+ DLPITEMHRGT+RTSYIPF
Sbjct: 76 PFFYGDLPITEMHRGTKRTSYIPF 99

BLAST of MS014549 vs. ExPASy TrEMBL
Match: A0A6C0M9E6 (Ribosomal protein S4 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. ExPASy TrEMBL
Match: A0A6C0MEQ7 (Ribosomal protein S4 OS=Pediomelum digitatum OX=458362 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. ExPASy TrEMBL
Match: A0A6C0MC80 (Ribosomal protein S4 OS=Pediomelum argophyllum OX=458352 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. ExPASy TrEMBL
Match: A0A386JNF1 (Ribosomal protein S4 OS=Glycine soja OX=3848 GN=rps4 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. ExPASy TrEMBL
Match: N0DKE5 (Ribosomal protein S4 OS=Phaseolus angularis OX=3914 GN=rps4 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGTERTSYIPF
Sbjct: 59 PLFHADLPITEMHRGTERTSYIPF 82

BLAST of MS014549 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-08
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGT+RTSYIPF
Sbjct: 76 PLFHGDLPITEMHRGTKRTSYIPF 99

BLAST of MS014549 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-08
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  PLFHVDLPITEMHRGTERTSYIPF 25
          PLFH DLPITEMHRGT+RTSYIPF
Sbjct: 76 PLFHGDLPITEMHRGTKRTSYIPF 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QHU79916.17.6e-0595.83ribosomal protein S4 [Pediomelum digitatum] >QHU79917.1 ribosomal protein S4 [Pe... [more]
YP_009709883.17.6e-0595.83ribosomal protein S4 [Phaseolus vulgaris] >QFI36096.1 ribosomal protein S4 [Phas... [more]
KAG4906037.17.6e-0595.83hypothetical protein JHK86_057284 [Glycine max] >KAG4906048.1 hypothetical prote... [more]
YP_007516900.17.6e-0595.83ribosomal protein S4 [Glycine max] >YP_009532841.1 ribosomal protein S4 [Glycine... [more]
QHU79921.17.6e-0595.83ribosomal protein S4 [Ladeania lanceolata][more]
Match NameE-valueIdentityDescription
Q317089.3e-0683.33Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1... [more]
Match NameE-valueIdentityDescription
A0A6C0M9E63.7e-0595.83Ribosomal protein S4 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1[more]
A0A6C0MEQ73.7e-0595.83Ribosomal protein S4 OS=Pediomelum digitatum OX=458362 PE=3 SV=1[more]
A0A6C0MC803.7e-0595.83Ribosomal protein S4 OS=Pediomelum argophyllum OX=458352 PE=3 SV=1[more]
A0A386JNF13.7e-0595.83Ribosomal protein S4 OS=Glycine soja OX=3848 GN=rps4 PE=3 SV=1[more]
N0DKE53.7e-0595.83Ribosomal protein S4 OS=Phaseolus angularis OX=3914 GN=rps4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G07734.14.6e-0891.67Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
ATMG00290.14.6e-0891.67mitochondrial ribosomal protein S4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014549.1MS014549.1mRNA