MS014479 (gene) Bitter gourd (TR) v1

Overview
NameMS014479
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 45
Locationscaffold553: 248383 .. 248643 (+)
RNA-Seq ExpressionMS014479
SyntenyMS014479
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

mRNA sequence

ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

Coding sequence (CDS)

ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

Protein sequence

MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHILQLPRVEEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS
Homology
BLAST of MS014479 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 9.4e-21
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMCVALL V+P++ACA  +I+LALR  RHIL +  RVEE++ K NS P
Sbjct: 1  MVFSIHRVLIVLLMCVALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSLP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          +  NN FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 Q--NNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of MS014479 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMC-VALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          MVF IHRVLVVLLMC VALL V+PD+ACA  +I+LALR  RHIL +  RVEE + K NS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          PR  N+ FDPN+SS+RRVRRGSDPIHN+S
Sbjct: 61 PR--NSKFDPNQSSKRRVRRGSDPIHNKS 87

BLAST of MS014479 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-18
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMC-VALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          MVF IHRVLVVLLMC VALL V+PD+ACA  +I+LA R  RHIL +  RVEE + K NS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          PR  N+ FDPN+SS+RRVRRGSDPIHN+S
Sbjct: 61 PR--NSKFDPNQSSKRRVRRGSDPIHNKS 87

BLAST of MS014479 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMC-VALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          M F IHRVL+VLLMC VALL V+ D+ACA  +I+LALR  RHIL +   VEE++ K NS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          PR  NN FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 PR--NNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of MS014479 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-16
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMC-VALLGVEPDEACAFTTINLALRQGRHILQLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMC VALL V+P++AC  T+++LALR  RH+L+ PR        NS P
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPR------DRNSRP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          R   N FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 R---NKFDPNRSSKRRVRRGSDPIHNRS 79

BLAST of MS014479 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMCVALL V+P++ACA  +I+LALR  RHIL +  RVEE++ K NS P
Sbjct: 1  MVFSIHRVLIVLLMCVALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSLP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          +  NN FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 Q--NNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of MS014479 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMC-VALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          M F IHRVL+VLLMC VALL V+ D+ACA  +I+LALR  RHIL +   VEE++ K NS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          PR  NN FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 PR--NNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of MS014479 vs. ExPASy TrEMBL
Match: A0A314ZMX4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07373 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 54/99 (54.55%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMCVAL-LGVEPDEACAFTTINLALRQG---------RH--ILQLPRV 60
          MVF  H V  VLL CV L L V+PDE  A T+I LALR+          RH   L+   +
Sbjct: 1  MVFSSHGVF-VLLFCVGLFLVVQPDEVSALTSIGLALRENQGQYHGIVPRHQRTLEAATM 60

Query: 61 EEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          EEMST+  ++  N N+NFDPN+SS+RRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNS-TNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

BLAST of MS014479 vs. ExPASy TrEMBL
Match: M5XJX5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMCVAL-LGVEPDEACAFTTINLALRQG---------RH--ILQLPRV 60
          MVF  H V  VLL C+ L L V+PDE  A T+I LALR+          RH   L+   +
Sbjct: 1  MVFSSHGVF-VLLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 EEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          EEMST+  ++  N N+NFDPN+SS+RRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNS-TNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

BLAST of MS014479 vs. ExPASy TrEMBL
Match: A0A498HEN2 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007184 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 1  MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGR---HILQLPR---------V 60
          M+   H V ++LL+C+  L V+PDE  A T+I  ALRQ R   H   LPR         +
Sbjct: 1  MICSNHGVFILLLICIGFLVVQPDEVFALTSIGAALRQNRDQDHRWILPRNQRSLKAVTM 60

Query: 61 EEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 88
          EEMST+  ++   N NNFD N+SS+RRVRRGSDPIHNR+
Sbjct: 61 EEMSTEKKNS--TNTNNFDLNQSSKRRVRRGSDPIHNRA 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032271.19.4e-2170.45CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA... [more]
KAG7029950.18.8e-1969.66hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598982.14.4e-1868.54hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61380.17.4e-1868.54hypothetical protein Csa_006322 [Cucumis sativus][more]
KAG7036811.15.3e-1664.77hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SRV24.5e-2170.45CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LHH03.6e-1868.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1[more]
A0A314ZMX41.6e-1054.55Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_073... [more]
M5XJX52.8e-1053.54Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1[more]
A0A498HEN22.8e-1049.49Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007184 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
NoneNo IPR availablePANTHERPTHR36726:SF4CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 1..87
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014479.1MS014479.1mRNA