MS014475 (gene) Bitter gourd (TR) v1

Overview


Name	MS014475
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	scaffold553: 213697 .. 214370 (+)
RNA-Seq Expression	MS014475
Synteny	MS014475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTCCCCAACGCCAACGCCCTCTTTTCCTCTCGCAAATGCAGAAACAGACACCGCCCCTTCCCCCTCATCACTGCCTCACTCCCCCTCCACCGCCGCCACATCGCAGTTGCAGCGGCGATCGCGATGGCGACGATGCACGCGACGACGATGCCGCTCGCGCTCGCTCAGAATTGGGGCACCCGCTCGTTCCTCAAAGAGCGGTACTTCGAGCCGGGGCTGTCGGCGGAGGACGCGGTAGCGAGGATAAGGCAGACGGCGGAGGGGCTGCACAGCATTCGTGACATGCTGGAGACCATGTCGTGGAGGTACGTCATCTTCTACATTCGTCTCAAGTCCGCATATCTCTCTCAAGACTTGAAAACCGCCATGGCCACGCTCCCCCAAGCTCGTCAAAGCGACTATGTCAAGGTTGCTAACGAGTTGGTCGATAACATGGCCGAGGTACGTATATATTATAGAAAAATACTTGGGTAGTAAAGAGAAATTTTTAATGATGGCGATGAGAAGATTTTTTTTTTAAAGATAATTAATACATTAAACTGAATTTGGGTTTAATTTTTGGATTGGTGTTTCAGTTGGATTATTACGTTCGCACGCCCAAGGTGTATGAATCTTATTTGTATTACGAGAAGACACTGAAATCCATAGACAATCTGGTGGCTTTGTTGGCA

mRNA sequence

GCCTTCCCCAACGCCAACGCCCTCTTTTCCTCTCGCAAATGCAGAAACAGACACCGCCCCTTCCCCCTCATCACTGCCTCACTCCCCCTCCACCGCCGCCACATCGCAGTTGCAGCGGCGATCGCGATGGCGACGATGCACGCGACGACGATGCCGCTCGCGCTCGCTCAGAATTGGGGCACCCGCTCGTTCCTCAAAGAGCGGTACTTCGAGCCGGGGCTGTCGGCGGAGGACGCGGTAGCGAGGATAAGGCAGACGGCGGAGGGGCTGCACAGCATTCGTGACATGCTGGAGACCATGTCGTGGAGGTACGTCATCTTCTACATTCGTCTCAAGTCCGCATATCTCTCTCAAGACTTGAAAACCGCCATGGCCACGCTCCCCCAAGCTCGTCAAAGCGACTATGTCAAGGTTGCTAACGAGTTGGTCGATAACATGGCCGAGTTGGATTATTACGTTCGCACGCCCAAGGTGTATGAATCTTATTTGTATTACGAGAAGACACTGAAATCCATAGACAATCTGGTGGCTTTGTTGGCA

Coding sequence (CDS)

GCCTTCCCCAACGCCAACGCCCTCTTTTCCTCTCGCAAATGCAGAAACAGACACCGCCCCTTCCCCCTCATCACTGCCTCACTCCCCCTCCACCGCCGCCACATCGCAGTTGCAGCGGCGATCGCGATGGCGACGATGCACGCGACGACGATGCCGCTCGCGCTCGCTCAGAATTGGGGCACCCGCTCGTTCCTCAAAGAGCGGTACTTCGAGCCGGGGCTGTCGGCGGAGGACGCGGTAGCGAGGATAAGGCAGACGGCGGAGGGGCTGCACAGCATTCGTGACATGCTGGAGACCATGTCGTGGAGGTACGTCATCTTCTACATTCGTCTCAAGTCCGCATATCTCTCTCAAGACTTGAAAACCGCCATGGCCACGCTCCCCCAAGCTCGTCAAAGCGACTATGTCAAGGTTGCTAACGAGTTGGTCGATAACATGGCCGAGTTGGATTATTACGTTCGCACGCCCAAGGTGTATGAATCTTATTTGTATTACGAGAAGACACTGAAATCCATAGACAATCTGGTGGCTTTGTTGGCA

Protein sequence

AFPNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA

Homology

[Close]

BLAST of MS014475 vs. NCBI nr
Match: XP_022144535.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Momordica charantia])

HSP 1 Score: 347.8 bits (891), Expect = 5.5e-92
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   AFPNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQNWG 60
           A+PNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMH TTMPLALAQNWG
Sbjct: 4   AYPNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHVTTMPLALAQNWG 63

Query: 61  TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL 120
           TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL
Sbjct: 64  TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL 123

Query: 121 KTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 180
           KTAMATLPQARQSDYVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA
Sbjct: 124 KTAMATLPQARQSDYVKAANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 183

[Close]

BLAST of MS014475 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 5.0e-69
Identity = 145/186 (77.96%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   AFPNANALFSSR-----KCRNRHR-PFPLITASLPLHRRHIAVAAAIAMATMHATTMPLA 60
           +F NAN LF SR     KC +R R  FP+ITASL +HRRHIA A A  +      T PLA
Sbjct: 3   SFANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQ--ATAPLA 62

Query: 61  LAQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSA 120
           LAQ+WGT SF+KERYFEPGLSAE+AVARI+QTAEGLHSIR+MLETMSWRYVIFYIRLKSA
Sbjct: 63  LAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSA 122

Query: 121 YLSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDN 180
           YLSQDLKTAM+ LPQARQ+D+VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID+
Sbjct: 123 YLSQDLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 182

[Close]

BLAST of MS014475 vs. NCBI nr
Match: XP_004133817.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus] >KGN56433.1 hypothetical protein Csa_010782 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 3.3e-68
Identity = 142/181 (78.45%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 4   NANALFSSR---KCRNRHRP-FPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQNW 63
           N N LFSSR     ++RHRP FP+ITASLP+HRRHIA   A+ +    AT + +ALAQ+W
Sbjct: 8   NPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL-VALAQSW 67

Query: 64  GTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 123
           GT SF+KERYFEPGLSAE+AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 68  GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 127

Query: 124 LKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 181
           LKTAM TLPQAR++D+VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID+LVALL
Sbjct: 128 LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187

[Close]

BLAST of MS014475 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 9.5e-68
Identity = 143/185 (77.30%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   AFPNANALFSSR-----KCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLAL 60
           AF NA  LFSSR     +C +RH PFP+I+ASL +HRRHIA A A+ +    A   P AL
Sbjct: 3   AFANATTLFSSRIPTPHRC-HRH-PFPIISASLSIHRRHIATALALVVGLQAAA--PPAL 62

Query: 61  AQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ WGT SF+KERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 63  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 122

Query: 121 LSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNL 180
           LSQDLKTAM+ LPQARQ++YVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+D+L
Sbjct: 123 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 182

[Close]

BLAST of MS014475 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 8.0e-67
Identity = 141/185 (76.22%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   AFPNANALFSSR-----KCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLAL 60
           AF NA  LFSSR     +C +RH PFP+I+ASL + RRHIA A A+ +    A   P AL
Sbjct: 3   AFANATTLFSSRIPTPHRC-HRH-PFPIISASLSIQRRHIATALALVVGLQAAA--PPAL 62

Query: 61  AQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ WGT SF+KERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 63  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 122

Query: 121 LSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNL 180
           LSQDLKTAM+ LPQARQ+DYVK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+D+L
Sbjct: 123 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 182

[Close]

BLAST of MS014475 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-48
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 15  RNRHRPFPLITAS----LPLHRRHIAVAAAIAMATMHATTMPLALAQNWGTRSFLKERYF 74
           R  ++PF ++  +      +  R   + + I    +   T      + WGTRSF+KE+YF
Sbjct: 21  RRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80

Query: 75  EPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMATLPQA 134
            PGLS EDA ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM  LP++
Sbjct: 81  MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPES 140

Query: 135 RQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 181
           R++DYV+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSIDN+V  LA
Sbjct: 141 RRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MS014475 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 34/122 (27.87%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 61  TRSF---LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TR F   LKER++   L   +AVAR++ +A+ + +++ +++  +W YV   +RL+++YL 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 121 QDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVA 180
            DLKT +A+ P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ +++A
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

[Close]

BLAST of MS014475 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-09
Identity = 30/115 (26.09%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 65  LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 124
           LKER++   L   +A AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 125 ATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 180
           A+ P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ +++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of MS014475 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 29/115 (25.22%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 65  LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 124
           LK+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 125 ATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 180
           ++ P+  +     +  +L D +  LDY  +     ++  YY +T+ +++ ++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of MS014475 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 29/115 (25.22%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 65  LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 124
           L+ER++   L   +A AR +++A+ + +++ ++E   W +V   +RL+++YL  DLKT +
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 125 ATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 180
            + P+  +     +  +L   +  LD+  +     E+  YY  T  ++ +++A L
Sbjct: 162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of MS014475 vs. ExPASy TrEMBL
Match: A0A6J1CRW5 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014193 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.7e-92
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   AFPNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQNWG 60
           A+PNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMH TTMPLALAQNWG
Sbjct: 4   AYPNANALFSSRKCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHVTTMPLALAQNWG 63

Query: 61  TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL 120
           TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL
Sbjct: 64  TRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDL 123

Query: 121 KTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 180
           KTAMATLPQARQSDYVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA
Sbjct: 124 KTAMATLPQARQSDYVKAANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 183

[Close]

BLAST of MS014475 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.6e-68
Identity = 142/181 (78.45%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 4   NANALFSSR---KCRNRHRP-FPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQNW 63
           N N LFSSR     ++RHRP FP+ITASLP+HRRHIA   A+ +    AT + +ALAQ+W
Sbjct: 8   NPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL-VALAQSW 67

Query: 64  GTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 123
           GT SF+KERYFEPGLSAE+AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 68  GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 127

Query: 124 LKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 181
           LKTAM TLPQAR++D+VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID+LVALL
Sbjct: 128 LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187

[Close]

BLAST of MS014475 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.6e-68
Identity = 143/185 (77.30%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   AFPNANALFSSR-----KCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLAL 60
           AF NA  LFSSR     +C +RH PFP+I+ASL +HRRHIA A A+ +    A   P AL
Sbjct: 3   AFANATTLFSSRIPTPHRC-HRH-PFPIISASLSIHRRHIATALALVVGLQAAA--PPAL 62

Query: 61  AQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ WGT SF+KERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 63  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 122

Query: 121 LSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNL 180
           LSQDLKTAM+ LPQARQ++YVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+D+L
Sbjct: 123 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 182

[Close]

BLAST of MS014475 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.9e-67
Identity = 141/185 (76.22%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   AFPNANALFSSR-----KCRNRHRPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLAL 60
           AF NA  LFSSR     +C +RH PFP+I+ASL + RRHIA A A+ +    A   P AL
Sbjct: 3   AFANATTLFSSRIPTPHRC-HRH-PFPIISASLSIQRRHIATALALVVGLQAAA--PPAL 62

Query: 61  AQNWGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ WGT SF+KERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 63  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 122

Query: 121 LSQDLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNL 180
           LSQDLKTAM+ LPQARQ+DYVK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+D+L
Sbjct: 123 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 182

[Close]

BLAST of MS014475 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.1e-67
Identity = 139/182 (76.37%), Postives = 153/182 (84.07%), Query Frame = 0


Query: 4   NANALFSSRKCRNRH-----RPFPLITASLPLHRRHIAVAAAIAMATMHATTMPLALAQN 63
           NAN+   S      H     R FP+ITASLP+HRRHIA   A+ +    AT  PLALAQ+
Sbjct: 7   NANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAAT--PLALAQS 66

Query: 64  WGTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 123
           WGT SF+KERYFEPGLSA++AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQ
Sbjct: 67  WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQ 126

Query: 124 DLKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVAL 181
           DLKTAM TLPQARQ+D+VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID+LVAL
Sbjct: 127 DLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 186

[Close]

BLAST of MS014475 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-49
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 15  RNRHRPFPLITAS----LPLHRRHIAVAAAIAMATMHATTMPLALAQNWGTRSFLKERYF 74
           R  ++PF ++  +      +  R   + + I    +   T      + WGTRSF+KE+YF
Sbjct: 21  RRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80

Query: 75  EPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMATLPQA 134
            PGLS EDA ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM  LP++
Sbjct: 81  MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPES 140

Query: 135 RQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALLA 181
           R++DYV+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSIDN+V  LA
Sbjct: 141 RRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MS014475 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-33
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 15  RNRHRPFPLITAS----LPLHRRHIAVAAAIAMATMHATTMPLALAQNWGTRSFLKERYF 74
           R  ++PF ++  +      +  R   + + I    +   T      + WGTRSF+KE+YF
Sbjct: 21  RRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80

Query: 75  EPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMATLPQA 134
            PGLS EDA ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM  LP++
Sbjct: 81  MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPES 140

Query: 135 RQSDYVKVANELVDNMAEL 150
           R++DYV+ ANELV+NM+E+
Sbjct: 141 RRNDYVQAANELVENMSEV 159

[Close]

BLAST of MS014475 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 29/115 (25.22%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 65  LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 124
           LK+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 125 ATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 180
           ++ P+  +     +  +L D +  LDY  +     ++  YY +T+ +++ ++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of MS014475 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 29/115 (25.22%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 65  LKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 124
           LK+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 125 ATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 180
           ++ P+  +     +  +L D +  LDY  +     ++  YY +T+ +++ ++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of MS014475 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 29/121 (23.97%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 60  GTRSFLKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 119
           GTR+F+K+  +   +  +  + R+++ A  L ++ D++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 120 LKTAMATLPQARQSDYVKVANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDNLVALL 179
               ++      +     +AN L DN  +L+   +T  + E+   Y+ T   +  ++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 180 A 181
           A
Sbjct: 220 A 220

The following BLAST results are available for this feature:

BLAST of MS014475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144535.1	5.5e-92	98.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Momordica chara...	[more]
XP_038880767.1	5.0e-69	77.96	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_004133817.1	3.3e-68	78.45	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus...	[more]
XP_022946003.1	9.5e-68	77.30	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	8.0e-67	76.22	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]

BLAST of MS014475 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	3.0e-48	58.24	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	1.6e-09	27.87	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41048	7.9e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	1.8e-08	25.22	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	1.3e-06	25.22	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]

BLAST of MS014475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRW5	2.7e-92	98.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Momordica cha...	[more]
A0A0A0L3W3	1.6e-68	78.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A6J1G2K7	4.6e-68	77.30	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	3.9e-67	76.22	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A5D3DC39	5.1e-67	76.37	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of MS014475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	2.1e-49	58.24	PsbQ-like 2	[more]
AT1G14150.2	6.2e-33	51.08	PsbQ-like 2	[more]
AT4G21280.1	1.3e-09	25.22	photosystem II subunit QA	[more]
AT4G21280.2	1.3e-09	25.22	photosystem II subunit QA	[more]
AT3G01440.1	1.7e-06	23.97	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 39..180 e-value: 2.0E-35 score: 122.4
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 30..180
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 33..179 e-value: 1.6E-39 score: 137.3
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 69..180
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 30..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014475.1	MS014475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding