MS013221 (gene) Bitter gourd (TR) v1

Overview
NameMS013221
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein of unknown function (DUF3754)
Locationscaffold459: 1336707 .. 1336821 (+)
RNA-Seq ExpressionMS013221
SyntenyMS013221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCAACTCTACTCTCTTTTTGATCCTATTCGTGGAGCCCAAGAAGTTGCAATACAATCTATCCCCTGATGAAATTGAAGTGCTAGAACAAAATTCTTTAGCATACTTGTTTCAA

mRNA sequence

CAGCAACTCTACTCTCTTTTTGATCCTATTCGTGGAGCCCAAGAAGTTCAATACAATCTATCCCCTGATGAAATTGAAGTGCTAGAACAAAATTCTTTAGCATACTTGTTTCAA

Coding sequence (CDS)

CAGCAACTCTACTCTCTTTTTGATCCTATTCGTGGAGCCCAAGAAGTTCAATACAATCTATCCCCTGATGAAATTGAAGTGCTAGAACAAAATTCTTTAGCATACTTGTTTCAA

Protein sequence

QQLYSLFDPIRGAQEVQYNLSPDEIEVLEQNSLAYLFQ
Homology
BLAST of MS013221 vs. NCBI nr
Match: CAA2978238.1 (aminopeptidase (DUF3754) [Olea europaea subsp. europaea])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1  QQLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
          QQLYSLFDP+ GA+++ Q NLSPDEI++LEQN L YLFQ
Sbjct: 6  QQLYSLFDPVYGAEKLEQQNLSPDEIDILEQNFLTYLFQ 44

BLAST of MS013221 vs. NCBI nr
Match: XP_022869259.1 (uncharacterized protein LOC111388708 isoform X1 [Olea europaea var. sylvestris])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1   QQLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QQLYSLFDP+ GA+++ Q NLSPDEI++LEQN L YLFQ
Sbjct: 71  QQLYSLFDPVYGAEKLEQQNLSPDEIDILEQNFLTYLFQ 109

BLAST of MS013221 vs. NCBI nr
Match: XP_021895755.1 (uncharacterized protein LOC110813068 [Carica papaya] >XP_021895756.1 uncharacterized protein LOC110813068 [Carica papaya])

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NLSP+EI++LEQN L YLFQ
Sbjct: 76  QLYSLFDPVHGAQKIQQQNLSPEEIDILEQNFLTYLFQ 113

BLAST of MS013221 vs. NCBI nr
Match: KAG8385032.1 (hypothetical protein BUALT_Bualt04G0180700 [Buddleja alternifolia])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ G+Q++ Q NLSPDEI++LEQN L YLFQ
Sbjct: 76  QLYSLFDPVHGSQKLEQQNLSPDEIDILEQNFLTYLFQ 113

BLAST of MS013221 vs. NCBI nr
Match: XP_042969294.1 (uncharacterized protein LOC122302216 isoform X6 [Carya illinoinensis])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDPI GAQ++ Q NLSP+EI+VLEQN L YLFQ
Sbjct: 65  QLYSLFDPIHGAQKLKQQNLSPEEIDVLEQNFLMYLFQ 102

BLAST of MS013221 vs. ExPASy TrEMBL
Match: A0A7C9D043 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NLSP+EI++LEQN L+YLFQ
Sbjct: 67  QLYSLFDPVHGAQKLEQQNLSPEEIDILEQNFLSYLFQ 104

BLAST of MS013221 vs. ExPASy TrEMBL
Match: A0A2Z6PG27 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_324820 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NL+PDE++VLEQN L YLFQ
Sbjct: 75  QLYSLFDPVHGAQKLQQQNLAPDEVDVLEQNFLTYLFQ 112

BLAST of MS013221 vs. ExPASy TrEMBL
Match: A0A0L9T7L3 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan293s000900 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NLSP+EI+VLEQN L YLFQ
Sbjct: 71  QLYSLFDPVHGAQKLEQQNLSPEEIDVLEQNFLTYLFQ 108

BLAST of MS013221 vs. ExPASy TrEMBL
Match: A0A0A0LC28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G599980 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NLS DEIEVLEQN L+YLFQ
Sbjct: 64  QLYSLFDPVHGAQKLEQQNLSSDEIEVLEQNFLSYLFQ 101

BLAST of MS013221 vs. ExPASy TrEMBL
Match: A0A0S3RW91 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G231400 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NLSP+EI+VLEQN L YLFQ
Sbjct: 71  QLYSLFDPVHGAQKLEQQNLSPEEIDVLEQNFLTYLFQ 108

BLAST of MS013221 vs. TAIR 10
Match: AT3G19340.1 (Protein of unknown function (DUF3754) )

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-08
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLFDP+ GAQ++ Q NL+  EI+VLEQN LAYLFQ
Sbjct: 66  QLYSLFDPVHGAQKIQQQNLTSQEIDVLEQNFLAYLFQ 103

BLAST of MS013221 vs. TAIR 10
Match: AT5G13940.1 (aminopeptidases )

HSP 1 Score: 42.7 bits (99), Expect = 7.5e-05
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0

Query: 2   QLYSLFDPIRGAQEV-QYNLSPDEIEVLEQNSLAYLFQ 39
           QLYSLF+P+RGA  + Q NLS  EI+ LE   L +LFQ
Sbjct: 354 QLYSLFEPVRGAHRLNQQNLSTREIDALEDQFLLHLFQ 391

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAA2978238.11.4e-0571.79aminopeptidase (DUF3754) [Olea europaea subsp. europaea][more]
XP_022869259.11.4e-0571.79uncharacterized protein LOC111388708 isoform X1 [Olea europaea var. sylvestris][more]
XP_021895755.12.4e-0571.05uncharacterized protein LOC110813068 [Carica papaya] >XP_021895756.1 uncharacter... [more]
KAG8385032.13.1e-0571.05hypothetical protein BUALT_Bualt04G0180700 [Buddleja alternifolia][more]
XP_042969294.13.1e-0576.32uncharacterized protein LOC122302216 isoform X6 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7C9D0431.5e-0571.05Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A2Z6PG271.5e-0571.05Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_324820 PE=4 SV... [more]
A0A0L9T7L31.5e-0573.68Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan293s000900 P... [more]
A0A0A0LC281.5e-0576.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G599980 PE=4 SV=1[more]
A0A0S3RW911.5e-0573.68Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G... [more]
Match NameE-valueIdentityDescription
AT3G19340.11.9e-0871.05Protein of unknown function (DUF3754) [more]
AT5G13940.17.5e-0557.89aminopeptidases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013221.1MS013221.1mRNA