MS012979 (gene) Bitter gourd (TR) v1

Overview


Name	MS012979
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold38: 1145311 .. 1145785 (-)
RNA-Seq Expression	MS012979
Synteny	MS012979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAATACAAAATATCAAACACTTTTCCCTTCAACAAAACCGGGATGGAACAAATCGAACTGCCGAAAAGAGAGCTTCTACGAACTTCGTTCGCTGAAATTCCCCTTATTCTCGTCCGACTAAGTACAATAAATCTTAATAGATTCGGTCGAGAGCCGGAGGACGATAAGAACCTCCTCTCAATTCCAATGCAGTTCCGTAGATCGCAGGAGCAATAGTAGGATCCCCTTGATCGAAGAGCCCGTCGAGATACACAAATTACTCAAGGGAAATAAACAAACCCCTCAAAGCCCCCACCGATGCAAGCACCAAGTCTTCAGCCCGATCAGAAAAAACCCAACAGAGTCAGAAATCTTATCTTCAGAAGAACCGCGACGGCGAGAGATCAGATCCTCAAAGCAGCACCACCCATCAGGGACACACCCTATCTCCGGAAAGCAATCAAGATCCGAGAAACCCACTGGCGGGAGA

mRNA sequence

ATGAAACAATACAAAATATCAAACACTTTTCCCTTCAACAAAACCGGGATGGAACAAATCGAACTGCCGAAAAGAGAGCTTCTACGAACTTCGTTCGCTGAAATTCCCCTTATTCTCGTCCGACTAAATCGCAGGAGCAATAGTAGGATCCCCTTGATCGAAGAGCCCGTCGAGATACACAAATTACTCAAGGGAAATAAACAAACCCCTCAAAGCCCCCACCGATGCAAGCACCAAGTCTTCAGCCCGATCAGAAAAAACCCAACAGAGTCAGAAATCTTATCTTCAGAAGAACCGCGACGGCGAGAGATCAGATCCTCAAAGCAGCACCACCCATCAGGGACACACCCTATCTCCGGAAAGCAATCAAGATCCGAGAAACCCACTGGCGGGAGA

Coding sequence (CDS)

ATGAAACAATACAAAATATCAAACACTTTTCCCTTCAACAAAACCGGGATGGAACAAATCGAACTGCCGAAAAGAGAGCTTCTACGAACTTCGTTCGCTGAAATTCCCCTTATTCTCGTCCGACTAAATCGCAGGAGCAATAGTAGGATCCCCTTGATCGAAGAGCCCGTCGAGATACACAAATTACTCAAGGGAAATAAACAAACCCCTCAAAGCCCCCACCGATGCAAGCACCAAGTCTTCAGCCCGATCAGAAAAAACCCAACAGAGTCAGAAATCTTATCTTCAGAAGAACCGCGACGGCGAGAGATCAGATCCTCAAAGCAGCACCACCCATCAGGGACACACCCTATCTCCGGAAAGCAATCAAGATCCGAGAAACCCACTGGCGGGAGA

Protein sequence

MKQYKISNTFPFNKTGMEQIELPKRELLRTSFAEIPLILVRLNRRSNSRIPLIEEPVEIHKLLKGNKQTPQSPHRCKHQVFSPIRKNPTESEILSSEEPRRREIRSSKQHHPSGTHPISGKQSRSEKPTGGR

Homology

[Close]

BLAST of MS012979 vs. NCBI nr
Match: KGN55852.1 (hypothetical protein Csa_011630 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 73/140 (52.14%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 1   MKQYKISNTFPFNKTGMEQIELPKRELLRTSFAEIPLILVRLNRRSNSRIPLIEEPVEIH 60
           MKQYK SNT PFNKTG+EQIELPKR LL+TSFAEIP+IL+     +   IPLIE+ V+  
Sbjct: 1   MKQYKRSNTSPFNKTGIEQIELPKRGLLQTSFAEIPVILI---EEATVEIPLIEKLVKEQ 60

Query: 61  KLLKGNKQTPQSPHRCKHQVFS-------PIRKNPTESE--ILSSEEPRRREIRSSKQHH 120
              KG+KQ P +P +   Q  +        + KN TESE  I      RRREIRSSKQHH
Sbjct: 61  ITQKGDKQKPLNPPQKSKQATTTEESSTRSVNKNSTESENLIFKKSTQRRREIRSSKQHH 120

Query: 121 PSGTHPISGKQSRSEKPTGG 132
                  S +QSRS KP  G
Sbjct: 121 S------SKQQSRSGKPPSG 131

[Close]

BLAST of MS012979 vs. ExPASy TrEMBL
Match: A0A0A0L5H0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019920 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.9e-20
Identity = 73/140 (52.14%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 1   MKQYKISNTFPFNKTGMEQIELPKRELLRTSFAEIPLILVRLNRRSNSRIPLIEEPVEIH 60
           MKQYK SNT PFNKTG+EQIELPKR LL+TSFAEIP+IL+     +   IPLIE+ V+  
Sbjct: 1   MKQYKRSNTSPFNKTGIEQIELPKRGLLQTSFAEIPVILI---EEATVEIPLIEKLVKEQ 60

Query: 61  KLLKGNKQTPQSPHRCKHQVFS-------PIRKNPTESE--ILSSEEPRRREIRSSKQHH 120
              KG+KQ P +P +   Q  +        + KN TESE  I      RRREIRSSKQHH
Sbjct: 61  ITQKGDKQKPLNPPQKSKQATTTEESSTRSVNKNSTESENLIFKKSTQRRREIRSSKQHH 120

Query: 121 PSGTHPISGKQSRSEKPTGG 132
                  S +QSRS KP  G
Sbjct: 121 S------SKQQSRSGKPPSG 131

The following BLAST results are available for this feature:

BLAST of MS012979 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55852.1	2.1e-19	52.14	hypothetical protein Csa_011630 [Cucumis sativus]	[more]

BLAST of MS012979 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H0	9.9e-20	52.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019920 PE=4 SV=1	[more]

BLAST of MS012979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012979.1	MS012979.1	mRNA