MS012953 (gene) Bitter gourd (TR) v1

Overview
NameMS012953
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Locationscaffold38: 850959 .. 851111 (-)
RNA-Seq ExpressionMS012953
SyntenyMS012953
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC

mRNA sequence

GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC

Coding sequence (CDS)

GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC

Protein sequence

GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
Homology
BLAST of MS012953 vs. NCBI nr
Match: XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
Sbjct: 76  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 126

BLAST of MS012953 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 75  GMKKHGSRLVMEFPM--KEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 124

BLAST of MS012953 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 76  GMKKHGSRLVMEFPM--KEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 125

BLAST of MS012953 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEK------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKK +RLAME  ++++      +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 73  GMKKLRRLAMELPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP 129

BLAST of MS012953 vs. NCBI nr
Match: XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKK +RLAME  ++++        +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 73  GMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP 131

BLAST of MS012953 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.8e-05
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 27 EVGEDMVVMDYAQPHRKPPIHNKK 51
          E GE++VVMDY QPHRKPPIHN+K
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85

BLAST of MS012953 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP
Sbjct: 76  GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 126

BLAST of MS012953 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMKK +RLAME  ++++        +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 73  GMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP 131

BLAST of MS012953 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1   GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           GMK+   RL MEF M  KEK+M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 81  GMKRDGSRLVMEFPM--KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 130

BLAST of MS012953 vs. ExPASy TrEMBL
Match: A0A5B7BC15 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035167 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           G K+ +R  + F+  + E+ ++ +ENEV ED+VVMDYAQP RKPPIHNK P
Sbjct: 156 GWKRQERSLLAFTPNDTEETVNSKENEVVEDIVVMDYAQPRRKPPIHNKDP 206

BLAST of MS012953 vs. ExPASy TrEMBL
Match: A0A5J4ZYW1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012910 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 52
           G K+  R  +  +  + ++ ++ EEN+V ED+VVMDYAQPHRKPPIHNK+P
Sbjct: 130 GWKRQARSMLVSTQHDTKETVNSEENDVAEDIVVMDYAQPHRKPPIHNKEP 180

BLAST of MS012953 vs. TAIR 10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 27 EVGEDMVVMDYAQPHRKPPIHNKK 51
          E GE++VVMDY QPHRKPPIHN+K
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154042.13.0e-19100.00uncharacterized protein LOC111021396 [Momordica charantia][more]
XP_038905997.18.8e-1176.92uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida][more]
XP_038905996.18.8e-1176.92uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida][more]
XP_023540680.17.4e-1064.91uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo][more]
XP_023005579.19.7e-1062.71uncharacterized protein LOC111498521 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q93VK89.8e-0579.17Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DKL11.5e-19100.00uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1KZM94.7e-1062.71uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521... [more]
A0A0A0L2984.7e-1075.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1[more]
A0A5B7BC151.6e-0554.90Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035167... [more]
A0A5J4ZYW11.6e-0552.94Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16515.16.9e-0679.17Encodes a root meristem growth factor (RGF). Belongs to a family of functionall... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34961:SF7SUBFAMILY NOT NAMEDcoord: 1..51
NoneNo IPR availablePANTHERPTHR34961TRANSMEMBRANE PROTEINcoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012953.1MS012953.1mRNA