MS012952 (gene) Bitter gourd (TR) v1

Overview


Name	MS012952
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	tRNA_edit domain-containing protein
Location	scaffold38: 841684 .. 847754 (+)
RNA-Seq Expression	MS012952
Synteny	MS012952

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAATTACCCAATGGGGAGGGAGACTGAAGCAGAGGCAGGGCGATACTCCATGGAAGCTCTGGCAAAGCTCGAACATCTCCAGAACCAAATCCTCCATCGAATTTCAAAGCTCGAGCTCGCCTGCCTTCCAAATCTCGATTCGGCACCTTCCCCTGCCCCCTCCCAAGGCGCAGACGGCGACACTGTGGCTCGACTCTCCGCCATTCTCCGGACCAACGCTGTCCACGACTTCTCCTTCAAGAGAGTCCCCTACGATTACTACGACTGGCCTCTCGAAGCTCGACGCGACGTTCTCGGTGCCCCCTCCGTCGATCATCTCTGCAAGAGCATCGTTCTGGTGCGCTTTATTTTTGCAATTTCGATTTGTGCTTTGTCTTTTTTTTTTTTTTTTTTACCATTTTGGGTGCTTATGTTCTCTGCTTCTAGGCTTATTCATATGATATTCGTGCTTTTTGGGTTTTAATTGGTGTGTGAAGTACTTAGAGGAAATGCTTTTGATTGAATGACCTTGGTTGTTCAAATGCATCTGTTCCTGAATTATAGCTCCGTTGGGTAGGGACATACATTTTTCAGTTAGTTGAAATAATGTATTGAACCGATGCAGTTAATACTAGTCCTTTTGTAATCATACTACCGATGAAGTAATACTAGTTGAGGATTGTGTCTAACGAGTACCTATCAAATACATCTTGCATAACCTATTAACCTATTGAACATAGAATTGAAAGTTCAAAAACCTATCGTGCAGATTCTCTGACATTTTGCTTGTCAAACACAACTTTAAAAGTTTAGGGACTTCTTAACACCTTTTAAAGTTTGTGGACCTATTAGGAACAATAAAGTTTATGAACCTATTAGGAACAATAAAGTTTAGGGACAAATTTGTAATTTTTTTTATCAACGCCGACTTGAGTGTGTTCTTCTATCATCCTGAAAATTTTCTATTTCTCCTTTGTGTTACTGAATAGTTTTGGGGAAGTTTCATAAAAGAAAAAAATGAAATCTGTGTAAATAATTATTTTCAACTTTCAAACAGTTCTTGGCTTAGAAGTCCAAGGATTTTACTTCTTTACAGAGTAAATTTTCCCATTCAACATATGTAAGGAAGAGAGAGGGGAGGAAAAGAAAAAGGCCTTTTCATTTTTTGTTACTTTTGCAAATATGCTGTTGATATAATTTGAGTTGAAAGGGAAAATGCTGCTACTGATTTGTTGACATGCTTGACAATTACTAGATGTGTGACTATCAATTTAAAGACGATGGGCAGAATTTTGTTATCAAATACTCTATGAATTGTGGTCATTCATTTTTAATTGAAATTTTGGTTGATAAGAACTCAACATTTATAGTGTGCTAGTGCAAGAAATATTATATATCATATCTAGGAGTTCAGTTAGAACCTCAACTGACTGGCATTTGGAGTGTTCTTCTGTTAATATTATCAGGTAAATACTCAAGCTCCATCCAATGTGGTTGATTGCAGCAATCGCAACAATTCAAAATTCTATGTTGTCGTTGTTCAGGTATGCTTTCCTTTCTCCTTTTATGTAAAAAGTCTTGCCAAATTACCTGTATCATACTCTTTAAAATAAAACATTTCTTAATGCAGTATACCGCTAAGTTCAGTGCTGAAATTGTTAAAAACTTCCTGTATTCACTCAATGATGGCAAAATAGCGAAAAAGAAGTTCAACTGTAAGTTCTCTATCATCTTAGAAGATTTCTAAAGGTTCTTGATGTGGTCATCCAAATTTAAGTTGACTTGGTTCATTACTTGTTAACATAGTCACGTACATGCTTTGATTAAGTTAAGTGAGAAGGGGATGAGGCAATTCAAGCATCATTACTTTGTCCCTGCTTATAGATGAAAGAACACAAGAGGAGGCCATACAAAACCAAGCTCTAACCAACCAAAAAGAGCCACCAAAAATGAGAAAAAAATTAATGAAAGACCCTAGTTCTCGTTGCTGGTCATCAATAGGGGAAAAAAAAGAAAAAAAGAAAAAAAAAAAAGAAAAACACAAAAAAAATTAACTAGGAGGTACCGATGTTTCAGATATTATAGTATCTTGAAGTGTTTTTGTTTTTTAACAGAGACAGCACTCATGGTTTCTAATTTTACACAGTGAGACTTGCTCCGGAGGAGACGTCTGCGAAATTAACTGGATATGAGCATAATGGAGTGACATGCATTGGCATGAAAACAGATATTCCAGTAAGCACCTTAACGTTTGACTTGATATCTCTAGTCTCAGAATTATTCTCGCTCGAGAAACCTATATTTAAACGTTTATTCTATATCTCTTACATATGTACTTTAAAGATCATGCAACCAATATGCTAGCTTCTCAAATCCGCAAGATTCTAAAGGGGTGCATGGTATTTTTGTGCACATGTGATGGCTAATCTTTTTTGTAGGGTTGTCTTTTTGTTGGATGGAAGACTAACTCTTAATGAAATTGTAGAATACATTCTATATTACATAATTCTGTTGTGAAAATTCGTAACAGACTAGGTATGGATCTACCATTTATCAGGAGATTATCACGACTAACTGGGATAAAATACAAAATCTAAATGTGATAAGAAAAGAAAGTTACTATCTATTAAGGATCAAATAGCTAGTGATATCATCACAATGGGAAAAAGGAGAATAATTAAGTATCATCACTAAGAGGAGCCCCGACTTGGAGAGTTAAAAAAAAGATCGGATGGTTTTTGGGCTAACCAAGAGAAGTAGGTGCAAACTCCCGATCAAATAAATTGATTCCATTTTGGGTAATGGGAATAGCCCAACAAGATAAGACATTAGTGCTTGAAATATTATTTTTGTTCATGGTGACTTGGTTATGAAACACCATCACGGGCAGAGGTGCGGTCTCCACCGAGACTAGACTCCAGTTTCCTCATTTTTGTTCATTATCAACTCATGGATTTCTCATCTGGAGCCTGATTTTCTGATAGGACTTAATAGCAAAGAGGCAATATGGTAATTAGCAAAGTAGTTTGTTAAAAGTTGTTAGAGACTATTTTATTAAAAATAGAAGGGCTGAGTTTTGTTATAAACTTATAATGGTTTAGTTTTGAGTGTGTTCAAGAGAGGAGGGTCAAGTACCTCGAAGTTGAGAGTTGCTAGTTGCACTTACTTCCATTTTATTTTTTTAATTTTAAGAAACAAAAATGTATTAATCACAAAAGGAGCCAACAACCTTAAGGTAGAGGGTGGAGATCACCCTTCCCCAAGAGCTATACAATGAGAGCTTTACAATTGTTGATAATTATAGTGAGACTATAATTAGAAAAGAATTTGCTAGGTTAACACACTACTATGAGGACAAATGTTGAATACTATCACAAAACAAATCAAAAGAAGAAAACTTCTCTTCAAACGTTCCTTTCTTTCCAAAGCAACCAAAGCCTGCATTTACTTACCTTCTTATTTTTCCATATTTCCGAGTACTATTACTAGGTTCCTAACATTTTCCCAATTATCCATCCCAAAACATAGAAGGAGCTGAAGCAATGTCAGCTGTAGGATGTATGCAAGCAAGAGAATCTTCTCGTCAACAAGGAACCTCATTGCCCAATTGTGCTACACTTTGGGCTTACATTAGAAATATGGGACACTACTAACTAGGATTGACAAAGATGTTTTTGGCATCTGTTGGGTGACCATGACCATGTTGCTCTTCTGCTTCCCCTTCCTTGAAATAGGACTGCTGTGCTTTGATATGCAAGAGCAAGCAATGGAGGTGATAAATGTATTTGTTTGAGCTACGTCTGCTGCAAAGGAATCTTGATGAAACCTTGAAATCTGTGGTGCAGAGAAGATCAATGAACATGAAGGAATTACAAAAAAAAGTGATAATGAATAAAAAAGAGGTAAAATATTTCAATCATGCTAATGCATCTCCTGGTGACATTATATTTTCAAGGGTCCTTAATCTTCTGAGTGGTGTCTTTTCCTAATGGATATTCGTATATATATCTAGATATCATGAGATATTTGCTGAATCTGTTCCGCAAGGAAGCGTTGAGGAGCTAAAGGTAAATGATCAGTGGCTTTTGAACATGCCTGTCCGTGCTGACGTAGAAGCTAAGCTAAGAAATACTGATAAACTACTTGGAAACTAATATGATTACTGGAGTGCTTACTGGTTACTAATGTACTTGGCATGCTTAATGCTACTGTAGTGGGTGTCGCTTAATGGGAGAAAAGTTGGTACCATCACTTGACCCACATCTCGAGGCCAAGGTTTTGGGGGCTGCGTAATGATACGGTAATTATTAGAGGCATATTATTAGTCACCAGTTAGTGTGGGATTTGGGGTAGAAAAATTTTGGGAATGGTTTTGAGAGGTAACTAGGTGTCTCAAATGCTTGGTAAACCTTTATATTTTCATTTGATATTGTTATACATTTCTTTTTAAAAAAAGCAAGAAACAAATTTCGTTTTTGTAATGAAAAGATACAACCTAGAACTTAAATAATTTCGTAGGATTTACATAAAAGCTCTCCCATTAGAATTAATAATATCAGAATTATGATTACAGAACAACTAGATAATGCACTCCAAGAAAATGCATTATGCTTCTTGCTTGGTGATAATGTGTTGCAACTAGATATTGCAAAACATTTCAGCCCCTCTTGTCTTGATTTCAATCTCATGTTCAGTAACGCAACAGCTTGTTCCTCGTCAAAACACAGAAAATGCCACGAAGCTTGGAGAAACAGTAGTCAGATGATTGATTACTCATTTACTCCAAATGATCACCCCTCCCTACTCTAATGGTTATTCAAGAAATCATGAAAAAGAATGAAACTCCAGTTGTCTTTAGCCAATACAAGTAAATTAGGACATAATCCCAGTAGATTTTTTCTACCTTCCACTGTCAATATATATTACAACCGTCTTAGGTTGGCCTATAATGGTTATGAGGCCTTGAGAAAAAAGTAAAGGAACCTAGAGGGAAAGGTTTAAACTTCAAAACTCATGATAACTACCTACGTAGGATTTCAGAATCCTATAGTTTCTCGGCAACTAGATATCATATGATCAAACAACTGTCCTATGAGATTAGTCAAGACAATGTTAACTGATTTGGACACTGAATATCCAAAAAAAGAATTAAAAAATCCTGTCAATATATATCACAGACTAGGTACAAATCTTCGTTTTTCCAGGTAAGGCTTACTACAATCCTACAACTAACTAGGACAAGCAATAAACTTAGAAAGAACAGAGATCAGATGATGAAGAAATCTAATTTCGCTGGGTAATATCATCCTTGATTACAGGTAAGAAGCAAATAGTTAGTTAACCAAATATTTCAACATTAACATAGAGGCTCTGATGTTTAATTTGCCTGGAAATGAAATACCAGTGAACTGTGTTACAATTTTAGATATTTTAACTTATTCTGATCTGGGGGAAATGGGTGTTCCCCCATGTGTAAATCTCTAGATCTTTCTTGATCGTCTTGCATCTGATTTTTTCCCAGCCTCCAGCTACTGTGTTGGACCAGTGTTTCATAGTTTCATGTCTGTCAACGTTTTATGTGTTGTACAGTATATTGTGGTCCACTGTATTGCTTTTGCCTAGACCAATGATTTTCTGCCAGTCTGCCATAACTGAAAAATGTCTCGATCGGACGGAAACCATAACTAAAAGCTCGCTTGTTCGACAGCATAAGCGTGTGCTTGAACACAAAATGGTTCTGACATGTTCCTACACATTAAGCAGATGACTAATACTGGGTAGATTGATGAATTATAAATAAACGCTATAACATATGCAAGCATTATTAACTAATAGATCAGTCTACAAATATTAACATAGAAATGTACTTCTTGCGATGCATCATTGACTATATATGTATGTTAAATCCCGATCTTGTCCATCGTGTTTTTATTGATTAGTTACATGCTGTTTCAGGTGATTTTGGATGAAGCCATTGCAAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGGGAAATCGACCTGAAGCTTGGGATCAGGACGTCCGAGTTCGTTAACTTTGTCAAACCCTTCATTGTCAAATGTAGT

mRNA sequence

GCGAATTACCCAATGGGGAGGGAGACTGAAGCAGAGGCAGGGCGATACTCCATGGAAGCTCTGGCAAAGCTCGAACATCTCCAGAACCAAATCCTCCATCGAATTTCAAAGCTCGAGCTCGCCTGCCTTCCAAATCTCGATTCGGCACCTTCCCCTGCCCCCTCCCAAGGCGCAGACGGCGACACTGTGGCTCGACTCTCCGCCATTCTCCGGACCAACGCTGTCCACGACTTCTCCTTCAAGAGAGTCCCCTACGATTACTACGACTGGCCTCTCGAAGCTCGACGCGACGTTCTCGGTGCCCCCTCCGTCGATCATCTCTGCAAGAGCATCGTTCTGGTAAATACTCAAGCTCCATCCAATGTGGTTGATTGCAGCAATCGCAACAATTCAAAATTCTATGTTGTCGTTGTTCAGTATACCGCTAAGTTCAGTGCTGAAATTGTTAAAAACTTCCTGTATTCACTCAATGATGGCAAAATAGCGAAAAAGAAGTTCAACTTGAGACTTGCTCCGGAGGAGACGTCTGCGAAATTAACTGGATATGAGCATAATGGAGTGACATGCATTGGCATGAAAACAGATATTCCAGTGATTTTGGATGAAGCCATTGCAAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGGGAAATCGACCTGAAGCTTGGGATCAGGACGTCCGAGTTCGTTAACTTTGTCAAACCCTTCATTGTCAAATGTAGT

Coding sequence (CDS)

GCGAATTACCCAATGGGGAGGGAGACTGAAGCAGAGGCAGGGCGATACTCCATGGAAGCTCTGGCAAAGCTCGAACATCTCCAGAACCAAATCCTCCATCGAATTTCAAAGCTCGAGCTCGCCTGCCTTCCAAATCTCGATTCGGCACCTTCCCCTGCCCCCTCCCAAGGCGCAGACGGCGACACTGTGGCTCGACTCTCCGCCATTCTCCGGACCAACGCTGTCCACGACTTCTCCTTCAAGAGAGTCCCCTACGATTACTACGACTGGCCTCTCGAAGCTCGACGCGACGTTCTCGGTGCCCCCTCCGTCGATCATCTCTGCAAGAGCATCGTTCTGGTAAATACTCAAGCTCCATCCAATGTGGTTGATTGCAGCAATCGCAACAATTCAAAATTCTATGTTGTCGTTGTTCAGTATACCGCTAAGTTCAGTGCTGAAATTGTTAAAAACTTCCTGTATTCACTCAATGATGGCAAAATAGCGAAAAAGAAGTTCAACTTGAGACTTGCTCCGGAGGAGACGTCTGCGAAATTAACTGGATATGAGCATAATGGAGTGACATGCATTGGCATGAAAACAGATATTCCAGTGATTTTGGATGAAGCCATTGCAAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGGGAAATCGACCTGAAGCTTGGGATCAGGACGTCCGAGTTCGTTAACTTTGTCAAACCCTTCATTGTCAAATGTAGT

Protein sequence

ANYPMGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS

Homology

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BLAST of MS012952 vs. NCBI nr
Match: XP_038903466.1 (uncharacterized protein LOC120090048 [Benincasa hispida])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 206/238 (86.55%), Postives = 219/238 (92.02%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E+EA A +  MEALAKLEH Q  ILHRISKLELA LPNLDSA S  PS G DGDTVA
Sbjct: 1   MGTESEAMAEQNYMEALAKLEHRQTLILHRISKLELAYLPNLDSATSSVPSDGEDGDTVA 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLSAILRTN+V+DFSFKRVP DYYDWPLEARRDVL A SVDHLCKSIVLVNTQAPS+VVD
Sbjct: 61  RLSAILRTNSVNDFSFKRVPSDYYDWPLEARRDVLDAASVDHLCKSIVLVNTQAPSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH
Sbjct: 121 CSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           NGVTCIGM+TDIPVILDEAI KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NGVTCIGMRTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of MS012952 vs. NCBI nr
Match: XP_008448863.1 (PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo])

HSP 1 Score: 412.9 bits (1060), Expect = 1.9e-111
Identity = 204/238 (85.71%), Postives = 216/238 (90.76%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E+EA A + SMEALAKLEH Q  ILHRIS LEL  LPNLDS PS  PS GAD DTVA
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLSAILRTNAV+DFSFKRVP DYYDW LEARRDVL A S+DHLCKSIVLVNTQAPS+VVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETS KLTGYEH
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           NGVTCIGMKTDIPVILDEAI KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

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BLAST of MS012952 vs. NCBI nr
Match: XP_022951583.1 (uncharacterized protein LOC111454353 [Cucurbita moschata] >KAG7028382.1 hypothetical protein SDJN02_09563 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 4.8e-107
Identity = 198/238 (83.19%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S+GADGDTVA
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SVDHLCKSIVLVNTQA S+VVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           N VTCIGMKTDIPVILDEAIAKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of MS012952 vs. NCBI nr
Match: XP_023538668.1 (uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.0 bits (1003), Expect = 7.7e-105
Identity = 195/238 (81.93%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E  A A R SMEALAKLE+ Q  I++RI KLELA LPNLDS PSP  S  ADGDTV+
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SVDHLCKSIVLVNTQA S+VVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           N VTCIGMKTDIPVILDEAIAKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

[Close]

BLAST of MS012952 vs. NCBI nr
Match: XP_023005520.1 (uncharacterized protein LOC111498483 [Cucurbita maxima])

HSP 1 Score: 391.0 bits (1003), Expect = 7.7e-105
Identity = 195/238 (81.93%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S  ADGDTV+
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLS ILRTNAV+DFSF RVP DYYDW LEARRDVL A SVDHLCKSIVLVNTQA S+VVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           N VTCIGMKTDIPVILDEAIAKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of MS012952 vs. ExPASy TrEMBL
Match: A0A1S3BLB4 (uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 9.1e-112
Identity = 204/238 (85.71%), Postives = 216/238 (90.76%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E+EA A + SMEALAKLEH Q  ILHRIS LEL  LPNLDS PS  PS GAD DTVA
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLSAILRTNAV+DFSFKRVP DYYDW LEARRDVL A S+DHLCKSIVLVNTQAPS+VVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CS+RNNSK+Y+VVVQYTAKF+AE VK+FLYSLNDGKIAKKKFNLRLAPEETS KLTGYEH
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           NGVTCIGMKTDIPVILDEAI KLNPDYFWLGGGEIDLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

[Close]

BLAST of MS012952 vs. ExPASy TrEMBL
Match: A0A6J1GI39 (uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC111454353 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.3e-107
Identity = 198/238 (83.19%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S+GADGDTVA
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLS ILRTNAV+DFSFKRVP DYYDW LEARRDVL A SVDHLCKSIVLVNTQA S+VVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           N VTCIGMKTDIPVILDEAIAKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

[Close]

BLAST of MS012952 vs. ExPASy TrEMBL
Match: A0A6J1KXM4 (uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.7e-105
Identity = 195/238 (81.93%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGADGDTVA 64
           MG E  A A R SMEALAKLE+ Q  I++RISKLELA LPNLDS PSP  S  ADGDTV+
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 65  RLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVD 124
           RLS ILRTNAV+DFSF RVP DYYDW LEARRDVL A SVDHLCKSIVLVNTQA S+VVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 125 CSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184
           CSNRNNSK+YVVVVQY+AKF+AE V++FLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 185 NGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           N VTCIGMKTDIPVILDEAIAKL+PDYFWLGGGE+DLKLGIRTSEF+NFVKPFI+KCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

[Close]

BLAST of MS012952 vs. ExPASy TrEMBL
Match: A0A6J1DMB4 (uncharacterized protein LOC111021353 OS=Momordica charantia OX=3673 GN=LOC111021353 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.0e-103
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 55  SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLV 114
           SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLV
Sbjct: 1   SQGADGDTVARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLV 60

Query: 115 NTQAPSNVVDCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEE 174
           NTQAPSNVVDCSNRNNSK+YVVVVQYTAKFSAE VKNFLYSLNDGKIAKKKFNLRLAPEE
Sbjct: 61  NTQAPSNVVDCSNRNNSKYYVVVVQYTAKFSAETVKNFLYSLNDGKIAKKKFNLRLAPEE 120

Query: 175 TSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFV 234
           TSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFV
Sbjct: 121 TSAKLTGYEHNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFV 180

Query: 235 KPFIVKCS 243
           KPFIVKCS
Sbjct: 181 KPFIVKCS 188

[Close]

BLAST of MS012952 vs. ExPASy TrEMBL
Match: A0A0A0L4A0 (tRNA_edit domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.7e-100
Identity = 186/239 (77.82%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 5   MGRETEAEAGRYSMEALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGA-DGDTV 64
           MG E+EA A + SMEA                 L+L CLPNLDS PS  PS GA D DTV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 65  ARLSAILRTNAVHDFSFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVV 124
           ARLSAIL TNAV+DFSFKRVP DYYDWPLEARRDVL A S+DHLCKSIVLVNTQAPS++V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 125 DCSNRNNSKFYVVVVQYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYE 184
           DCS+RNNSK+Y+VVVQYTAKF+AE +++FLYSLNDGKIAKKKFNLRLAPEE SAKLTGYE
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 185 HNGVTCIGMKTDIPVILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           HNGVTCIGMKTDIPVILDEAI KLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFI+KCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

[Close]

BLAST of MS012952 vs. TAIR 10
Match: AT4G16510.1 (YbaK/aminoacyl-tRNA synthetase-associated domain )

HSP 1 Score: 335.5 bits (859), Expect = 3.6e-92
Identity = 166/224 (74.11%), Postives = 192/224 (85.71%), Query Frame = 0


Query: 20  ALAKLEHLQNQILHRISKLELACLPNLDSAPSPAPSQGAD-GDTVARLSAILRTNAVHDF 79
           A A+LE LQ +ILH+IS LE + LP  +S+ +P+PS   D  +TV RLS IL++  V+DF
Sbjct: 10  AAAELERLQIEILHKISILESSFLPQ-NSSAAPSPSLPVDENETVTRLSTILQSGGVNDF 69

Query: 80  SFKRVPYDYYDWPLEARRDVLGAPSVDHLCKSIVLVNTQAPSNVVDCSNRNNSKFYVVVV 139
            FKRV  DYYDWPLE+RRDVLGA SVDHLCKSIVLVNTQA SN++DCS+ NNSK+YVVVV
Sbjct: 70  CFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPNNSKYYVVVV 129

Query: 140 QYTAKFSAEIVKNFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEHNGVTCIGMKTDIPV 199
           QYTA+F+AE VK FLYSLN+GKI KK+FNLRLAPEETS KLTG+EHNGVTCIGMKT+IPV
Sbjct: 130 QYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTCIGMKTNIPV 189

Query: 200 ILDEAIAKLNPDYFWLGGGEIDLKLGIRTSEFVNFVKPFIVKCS 243
           ILDEAI KL PD+FWLGGGEIDLKLG+RTSEF+ FVKPFIV CS
Sbjct: 190 ILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

The following BLAST results are available for this feature:

BLAST of MS012952 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903466.1	1.3e-112	86.55	uncharacterized protein LOC120090048 [Benincasa hispida]	[more]
XP_008448863.1	1.9e-111	85.71	PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]	[more]
XP_022951583.1	4.8e-107	83.19	uncharacterized protein LOC111454353 [Cucurbita moschata] >KAG7028382.1 hypothet...	[more]
XP_023538668.1	7.7e-105	81.93	uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]	[more]
XP_023005520.1	7.7e-105	81.93	uncharacterized protein LOC111498483 [Cucurbita maxima]	[more]

BLAST of MS012952 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLB4	9.1e-112	85.71	uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=...	[more]
A0A6J1GI39	2.3e-107	83.19	uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC1114543...	[more]
A0A6J1KXM4	3.7e-105	81.93	uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483...	[more]
A0A6J1DMB4	2.0e-103	98.94	uncharacterized protein LOC111021353 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A0A0L4A0	4.7e-100	77.82	tRNA_edit domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 P...	[more]

BLAST of MS012952 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16510.1	3.6e-92	74.11	YbaK/aminoacyl-tRNA synthetase-associated domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	PFAM	PF04073	tRNA_edit	coord: 165..233 e-value: 1.1E-7 score: 31.9
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	GENE3D	3.90.960.10		coord: 70..242 e-value: 2.6E-29 score: 103.9
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	SUPERFAMILY	55826	YbaK/ProRS associated domain	coord: 76..241
None	No IPR available	PANTHER	PTHR30411	UNCHARACTERIZED	coord: 18..242
None	No IPR available	PANTHER	PTHR30411:SF4	YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN	coord: 18..242
None	No IPR available	CDD	cd04332	YbaK_like	coord: 93..239 e-value: 2.18055E-22 score: 87.2132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012952.1	MS012952.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0002161	aminoacyl-tRNA editing activity