MS012525 (gene) Bitter gourd (TR) v1

Overview
NameMS012525
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold63: 1297293 .. 1297400 (-)
RNA-Seq ExpressionMS012525
SyntenyMS012525
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTCAGGAGGAAGCATATCGACGCGGCTCTCTAAGCATGCCGAAGAGGATGGTTTTAATGGTGCGGAAGGCATTCCTCTCAGACGGCAAGAATCCTCGAGGTTGCCT

mRNA sequence

GGTTCAGGAGGAAGCATATCGACGCGGCTCTCTAAGCATGCCGAAGAGGATGGTTTTAATGGTGCGGAAGGCATTCCTCTCAGACGGCAAGAATCCTCGAGGTTGCCT

Coding sequence (CDS)

GGTTCAGGAGGAAGCATATCGACGCGGCTCTCTAAGCATGCCGAAGAGGATGGTTTTAATGGTGCGGAAGGCATTCCTCTCAGACGGCAAGAATCCTCGAGGTTGCCT

Protein sequence

GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP
Homology
BLAST of MS012525 vs. NCBI nr
Match: XP_022136459.1 (probable magnesium transporter NIPA4 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP
Sbjct: 311 GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 346

BLAST of MS012525 vs. NCBI nr
Match: XP_022922721.1 (probable magnesium transporter NIPA4 isoform X1 [Cucurbita moschata] >XP_023552525.1 probable magnesium transporter NIPA4 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7015012.1 putative magnesium transporter NIPA4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   S+S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 311 GPSASLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 346

BLAST of MS012525 vs. NCBI nr
Match: KAG6576992.1 (putative magnesium transporter NIPA4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   S+S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 295 GPSASLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 330

BLAST of MS012525 vs. NCBI nr
Match: XP_008456039.1 (PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Cucumis melo] >KAA0038946.1 putative magnesium transporter NIPA4 isoform X1 [Cucumis melo var. makuwa] >TYK11198.1 putative magnesium transporter NIPA4 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   ++S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 311 GPAANLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 346

BLAST of MS012525 vs. NCBI nr
Match: XP_038884185.1 (probable magnesium transporter NIPA4 isoform X1 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   S+S RLSKHAEEDGF+G EGIPLRRQESSR+P
Sbjct: 311 GPATSLSIRLSKHAEEDGFSGGEGIPLRRQESSRMP 346

BLAST of MS012525 vs. ExPASy TrEMBL
Match: A0A6J1C4C7 (Probable magnesium transporter OS=Momordica charantia OX=3673 GN=LOC111008165 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP
Sbjct: 311 GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 346

BLAST of MS012525 vs. ExPASy TrEMBL
Match: A0A6J1E4W8 (Probable magnesium transporter OS=Cucurbita moschata OX=3662 GN=LOC111430631 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   S+S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 311 GPSASLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 346

BLAST of MS012525 vs. ExPASy TrEMBL
Match: A0A5A7TA80 (Probable magnesium transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00390 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   ++S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 311 GPAANLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 346

BLAST of MS012525 vs. ExPASy TrEMBL
Match: A0A1S3C299 (Probable magnesium transporter OS=Cucumis melo OX=3656 GN=LOC103496090 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   ++S RLSKHAEEDGF+G EGIPLRRQESSRLP
Sbjct: 311 GPAANLSIRLSKHAEEDGFSGGEGIPLRRQESSRLP 346

BLAST of MS012525 vs. ExPASy TrEMBL
Match: A0A0A0LAD9 (Probable magnesium transporter OS=Cucumis sativus OX=3659 GN=Csa_3G228350 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 1   GSGGSISTRLSKHAEEDGFNGAEGIPLRRQESSRLP 37
           G   ++S RLSKHAEE GFNG EGIPLRRQESSRLP
Sbjct: 311 GPATTLSMRLSKHAEEGGFNGGEGIPLRRQESSRLP 346

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136459.13.1e-10100.00probable magnesium transporter NIPA4 [Momordica charantia][more]
XP_022922721.12.7e-0680.56probable magnesium transporter NIPA4 isoform X1 [Cucurbita moschata] >XP_0235525... [more]
KAG6576992.12.7e-0680.56putative magnesium transporter NIPA4, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_008456039.16.0e-0677.78PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Cucumis melo] >KAA00... [more]
XP_038884185.17.9e-0677.78probable magnesium transporter NIPA4 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C4C71.5e-10100.00Probable magnesium transporter OS=Momordica charantia OX=3673 GN=LOC111008165 PE... [more]
A0A6J1E4W81.3e-0680.56Probable magnesium transporter OS=Cucurbita moschata OX=3662 GN=LOC111430631 PE=... [more]
A0A5A7TA802.9e-0677.78Probable magnesium transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3C2992.9e-0677.78Probable magnesium transporter OS=Cucumis melo OX=3656 GN=LOC103496090 PE=3 SV=1[more]
A0A0A0LAD98.5e-0677.78Probable magnesium transporter OS=Cucumis sativus OX=3659 GN=Csa_3G228350 PE=3 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012525.1MS012525.1mRNA