MS012425 (gene) Bitter gourd (TR) v1

Overview


Name	MS012425
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	mediator of RNA polymerase II transcription subunit 28
Location	scaffold63: 600116 .. 601986 (+)
RNA-Seq Expression	MS012425
Synteny	MS012425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAAGTCAGTGACTAATCCCTCTCCTGTGTTGCCTGAGTTTCACTAGATTGTGGAGAACATTGGGAACTAGTAATTGGGCTGGTTCCTTTTATATCATTAACATATTTTCTTGCTCTATCATATTCCGCCTTATGATATGATCTCTTGAATTGAATAAGTTGTGTAAAAGAGTTTTATGTTTATAATTGTGGTCAATAACAATATTGCATGAATAACTGGCCTATAGCTTCGGTCTTTGTTGGTGTTGCACTGATTTTCAAATTGGTTATTTGACCAATCAAATTAGAAATCAGAGAAACTCGTAGATCAACAAATAATAAATTGAGCCTCTTCCGAGTTTAGTGCCACTCATGTAGACTGTTCAGTGCCAATTGCTGTCTGCAGGTCTATGTGTTAAACATGCAAACCACGAAAAGTCATTCTTTAGTTTATTTTCCAAAGGAGCCAAAGTAGAGCTTTACTAGCATTTGTCTACAAAACTGTAGAGAGTGGTAAGTTGCCGCACTTCTAAGGAAGTGGTAACTGATGTAGTACTGAAACAAGGTGGGTTGAGATTTAGGCAGCATTTAGAGTGCATACTTTTTGCTTTAATTGAGAAAGGGCTTGGCGTTTCACTCTTTCTCATGGGGTTGTCATGGATTGTCGGCCATACAGATAAGGAAGTCCAAGGAACAATTGTCATTTTATGTTCTTTTAAGGAAGTTAGGGTCTTTAAAGTTATGAAAAACTGATGTACAACTACAATCCAGATCTTAGTTTTTACCAAGCAGGCAGATGTCTTCAGTTTCTTCATAATATGTAGCATCATATGCATTTCTATGTTTATCAATGGATACTTTAGCAAGTGCTATCTGTTCTGTAGACAACTATAGAGGGGCTGTCTCTTGGTATTGTTTCACTCAACCAATTCGTGCTTGTTTGGTTTGCTTTCATTACTCTCAAGCACGACAGTTTGTGAAGCAACTTGCTTGACGGTAATTCTTCATGTAATAATCTATGCCTAAACTGTTGTTAATCAGCTCTCTTTCTGAAGCCCATGTTTCTCATCATGCTCTCCCCTATTGCATTTTACTATGGGTCTGCACCTCGACTAGCTGGATCTAATGACTGAACTTTAGTCTTTGATTTTGTTGCATTAAAATTATGTGGATGAGTGATTTTCATTAATTTGTTGTATGAAAATATGTGGATCGGAAGTGACATTTAGATCTAGAAGTAGCAAGACTGTCTGCAATCTGCAACTCTAAAGGCGTTCAATGTAGGACATTTGTAAACAGTGAGTTGAACCAATATTCCTGTGGCTGGGCATTTGTAAATAGTGAAAATGACACCCGATTTTGTTAATGTTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGTAAGTTAATCAAGCACCCTCCTTTACAGTTCAAAGAGGAGTGACTCTTGTGATAAATGTAGCACAACTCCTTTTTTAACATTCTGTGTTACTTTTCAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTT

mRNA sequence

ATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTT

Coding sequence (CDS)

ATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTT

Protein sequence

MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV

Homology

[Close]

BLAST of MS012425 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQLAKHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of MS012425 vs. NCBI nr
Match: XP_038904970.1 (mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904972.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904973.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904974.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLKN+IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPNKVETLRKEISAIEEELKLKNEIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. NCBI nr
Match: XP_004152267.1 (mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_014841 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >KAG6576925.1 Mediator of RNA polymerase II transcription subunit 28, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014951.1 Mediator of RNA polymerase II transcription subunit 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >KAA0044351.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa] >TYK29480.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 129/141 (91.49%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLK+QL KHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. ExPASy Swiss-Prot
Match: Q9LFA5 (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.8e-40
Identity = 88/135 (65.19%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 15  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEELK K+++IKKH RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLAKHNNELEKV 142
           +K+Q+ KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of MS012425 vs. ExPASy TrEMBL
Match: A0A6J1D7C5 (mediator of RNA polymerase II transcription subunit 28 OS=Momordica charantia OX=3673 GN=LOC111017697 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQLAKHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of MS012425 vs. ExPASy TrEMBL
Match: A0A0A0KT19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. ExPASy TrEMBL
Match: A0A6J1JAT8 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=3661 GN=LOC111482804 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. ExPASy TrEMBL
Match: A0A6J1E897 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=3662 GN=LOC111430779 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. ExPASy TrEMBL
Match: A0A1S3BZ89 (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 129/141 (91.49%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLAKHNNELEKV 142
           EGWKKDLK+QL KHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of MS012425 vs. TAIR 10
Match: AT3G52860.1 (unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-41
Identity = 88/135 (65.19%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 15  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEELK K+++IKKH RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLAKHNNELEKV 142
           +K+Q+ KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

The following BLAST results are available for this feature:

BLAST of MS012425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149222.1	1.8e-69	100.00	mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]	[more]
XP_038904970.1	5.0e-64	93.62	mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_0...	[more]
XP_004152267.1	1.5e-63	92.20	mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN527...	[more]
XP_022922953.1	1.9e-63	92.20	mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_...	[more]
XP_008454378.1	2.1e-62	91.49	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]...	[more]

BLAST of MS012425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFA5	6.8e-40	65.19	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O...	[more]

BLAST of MS012425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7C5	8.6e-70	100.00	mediator of RNA polymerase II transcription subunit 28 OS=Momordica charantia OX...	[more]
A0A0A0KT19	7.0e-64	92.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1	[more]
A0A6J1JAT8	9.2e-64	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E897	9.2e-64	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=...	[more]
A0A1S3BZ89	1.0e-62	91.49	mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G...	[more]

BLAST of MS012425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52860.1	4.8e-41	65.19	unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..141
None	No IPR available	PFAM	PF11594	Med28	coord: 30..125 e-value: 1.9E-18 score: 66.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	PANTHER	PTHR39117:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141
IPR034456	Mediator of RNA polymerase II transcription subunit 28	PANTHER	PTHR39117	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012425.1	MS012425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex