MS012255 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CAAACAGTTTGGACAGATGAGAAGCACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGAGTTGCATCAATATAGGCACTTGCGTGCTTCGACCTCGAAACAGAAAACACGTAGGAAGCAGATCACGCCTAATATATCTTCTTCAGAGGTGAGGCAATACAGCCACAGCAAGAGTGGGAGTGAGTTCCCTATCTCGTTCCTCTACCTGCTTAATGATTTATTCTTGCAATAATTTTTTAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTCATTGGATAGGACTGCCAATTCCCCTGCTGCTATTTTAGAGGATCTTTGGATAAATCATTTTCCTTCTGCAGGAAAACAATGTAATCTGGAAGCACCTGATCTCCTTGAAGAATGTGGAAGTTATAGTGATAGGAGACACTTAAGGTACATGGCAAACCCCTGTGGATTTGCAAGAAGTTCACAGCAGATCTCTACACGCAGTGGTGATTCTGTTGCAATTCTTACAGGTATCTTTGATTGAATCATATGCTCTCGAATTAACAATGGTTTCTTATTGTTACCTGGAAATCATGTTTTGTAATGGCGAAGGTGTTTGAAATAATTGTTTTAGTACACAGTATCTACCTTTAGCACCCATTAGATGCACTCATATTTCTTATTTAATTCTATGATTGGTGTATTGATATGACCATTACTTTCTGGTCCTGTACCATTGAAGTTGTCCTGCATATCTTCTTTCTAATCTTATGATTCTTATCATATGTTTGTTGAATTTTGTGTTCATCAAATGTACTCGAAAAGAATATGAGAGGGGTTTATTAAAGATAAGACTTAAAGCACATGACTTGTAAAATTGGTATGTTAAGCTTAAAGTTTTGTGTTATATTCTTAGCCATGGAAAATCTCTATATTATATTCTAGAATTATAGTTAATAATTGGATAGTTTTAACATGGTTTTAGATGTGGGGATAACCATGTTCCCATACCATGACTTTTAGTGTTTAAGCCAGGGACGACACTGAGCATTTATGGTCACAACACTTCATGTTAATTGTATTTCACAATTAAGAATTCGGGACCAACTGATTGCTTTGAAGTTGTTTAATGTTTTTTTTTGTTCTTTTTTGTTCTTTTAAATCTGTGGGTGTTTAGGCTAGCTTGCTCACACCTTGATTAATCTCATGGGACAACCGCCTGATCCTACTACATTTGGTTGCTAAGGAGACTCTAGGATATATCCTATGTAGGTGGTCACCATGGTTTGAACACATTTTTCCAAATTCTTTAGAATTTACCTTGGCCCCTTTGGACCACTAGGTCAATCTATGATGGTTTTGTATGACGTTTATCTATAGGTGAAAAAAGTAGAAGCCCTTTGTTTAAAGTTAGATGAGCAAGAGGAGCATTGCTGTGCTATGTATTAGTGGGAGGAATGAGTAAAACTGAGTATACATGACTAGGATGGAGTGTATTCTGGTGTTGATGAACTTGCTATATGAAGGCAGGCTAATGGTTATTGGACGGTGGCTGTTTAGGAAGAAATTCTTAGGACCATTCATTTTTGACAAATTGGAGCAACCACCACAAGGCATAAAGAATAAGCCTTATTGTATGAACGAAAAGGATTCCCACAGAGCTACTTCAATATTGGAGTTGAAGAAAAAAGAGCAGTCATGGAATGAGTCTCAATCTGATCTTTTTTTCCACTTTGAATATATATATATAAACGTTCCTGTAGAGTAGAAATCATGCTGATGAGTAGTTTTACCACAGGTCTAATAAATGAGATAATTTGGATCTTTTGAGCACAAGGAGACCCAAAGCTTACCTTTTACAAAGCTGAATGACAATCATGTTTGCTAAGTTAAAGGATTCAATACCTAGGTTGAGATGCTAAATGGTGAATTCTTCCTGTCTCATCTAAGGTGTACCATGTTCTGAAGTCTGACATTAGTTAGCTTGGCATTTAAAAATATCAATTTAATAAGATTCATAATTTGGAAATTGTGGATGCTACAAACATTATGAATTTTGTACTTCTACTATTTTTTTTTTGCCTTGAAGGTTTGGAGTTATAAGAAGTCTGAAATTAGTTAGCTTGCCTGTTGTCAGACTAATTTGGTTTCTTATCTTTTCATTTTCTATTATGTAGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAGAGTTGTCTGGTGGCATATCTAATGCAAAAAGGTTAAAGAGAGCTACTACTGATTCTTCGAGCAACAACCAAGTAAAACTACTCTTTGGAAAACTAACC CAAACAGTTTGGACAGATGAGAAGCACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGAGTTGCATCAATATAGGCACTTGCGTGCTTCGACCTCGAAACAGAAAACACGTAGGAAGCAGATCACGCCTAATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTCATTGGATAGGACTGCCAATTCCCCTGCTGCTATTTTAGAGGATCTTTGGATAAATCATTTTCCTTCTGCAGGAAAACAATGTAATCTGGAAGCACCTGATCTCCTTGAAGAATGTGGAAGTTATAGTGATAGGAGACACTTAAGGTACATGGCAAACCCCTGTGGATTTGCAAGAAGTTCACAGCAGATCTCTACACGCAGTGGTGATTCTGTTGCAATTCTTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAGAGTTGTCTGGTGGCATATCTAATGCAAAAAGGTTAAAGAGAGCTACTACTGATTCTTCGAGCAACAACCAAGTAAAACTACTCTTTGGAAAACTAACC CAAACAGTTTGGACAGATGAGAAGCACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGAGTTGCATCAATATAGGCACTTGCGTGCTTCGACCTCGAAACAGAAAACACGTAGGAAGCAGATCACGCCTAATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTCATTGGATAGGACTGCCAATTCCCCTGCTGCTATTTTAGAGGATCTTTGGATAAATCATTTTCCTTCTGCAGGAAAACAATGTAATCTGGAAGCACCTGATCTCCTTGAAGAATGTGGAAGTTATAGTGATAGGAGACACTTAAGGTACATGGCAAACCCCTGTGGATTTGCAAGAAGTTCACAGCAGATCTCTACACGCAGTGGTGATTCTGTTGCAATTCTTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAGAGTTGTCTGGTGGCATATCTAATGCAAAAAGGTTAAAGAGAGCTACTACTGATTCTTCGAGCAACAACCAAGTAAAACTACTCTTTGGAAAACTAACC QTVWTDEKHRSYLDSLEASFVQELHQYRHLRASTSKQKTRRKQITPNISSSELMVLQDASWQKANIGRNDPSLDRTANSPAAILEDLWINHFPSAGKQCNLEAPDLLEECGSYSDRRHLRYMANPCGFARSSQQISTRSGDSVAILTEVSDQNFVDNHPGELSGGISNAKRLKRATTDSSSNNQVKLLFGKLT Homology
BLAST of MS012255 vs. NCBI nr
Match: XP_022135587.1 (uncharacterized protein LOC111007509, partial [Momordica charantia]) HSP 1 Score: 280.8 bits (717), Expect = 8.9e-72 Identity = 151/193 (78.24%), Postives = 153/193 (79.27%), Query Frame = 0
BLAST of MS012255 vs. NCBI nr
Match: XP_008454952.1 (PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]) HSP 1 Score: 264.2 bits (674), Expect = 8.6e-67 Identity = 136/185 (73.51%), Postives = 152/185 (82.16%), Query Frame = 0
BLAST of MS012255 vs. NCBI nr
Match: KAA0031301.1 (Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa] >TYK06753.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]) HSP 1 Score: 262.7 bits (670), Expect = 2.5e-66 Identity = 135/184 (73.37%), Postives = 151/184 (82.07%), Query Frame = 0
BLAST of MS012255 vs. NCBI nr
Match: XP_023553838.1 (uncharacterized protein LOC111811294 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 261.9 bits (668), Expect = 4.3e-66 Identity = 135/187 (72.19%), Postives = 151/187 (80.75%), Query Frame = 0
BLAST of MS012255 vs. NCBI nr
Match: XP_004136978.1 (cold-regulated protein 27 isoform X1 [Cucumis sativus]) HSP 1 Score: 259.6 bits (662), Expect = 2.1e-65 Identity = 134/185 (72.43%), Postives = 151/185 (81.62%), Query Frame = 0
BLAST of MS012255 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08 Identity = 57/191 (29.84%), Postives = 89/191 (46.60%), Query Frame = 0
BLAST of MS012255 vs. ExPASy Swiss-Prot
Match: Q8L983 (Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07 Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of MS012255 vs. ExPASy TrEMBL
Match: A0A6J1C346 (uncharacterized protein LOC111007509 OS=Momordica charantia OX=3673 GN=LOC111007509 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 4.3e-72 Identity = 151/193 (78.24%), Postives = 153/193 (79.27%), Query Frame = 0
BLAST of MS012255 vs. ExPASy TrEMBL
Match: A0A1S3BZU8 (uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 4.2e-67 Identity = 136/185 (73.51%), Postives = 152/185 (82.16%), Query Frame = 0
BLAST of MS012255 vs. ExPASy TrEMBL
Match: A0A5D3C4A3 (Cold regulated protein 27, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00540 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 1.2e-66 Identity = 135/184 (73.37%), Postives = 151/184 (82.07%), Query Frame = 0
BLAST of MS012255 vs. ExPASy TrEMBL
Match: A0A0A0K7Z2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65 Identity = 134/185 (72.43%), Postives = 151/185 (81.62%), Query Frame = 0
BLAST of MS012255 vs. ExPASy TrEMBL
Match: A0A6J1GKR5 (uncharacterized protein LOC111454842 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65 Identity = 134/187 (71.66%), Postives = 150/187 (80.21%), Query Frame = 0
BLAST of MS012255 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 ) HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10 Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 0
BLAST of MS012255 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 ) HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09 Identity = 57/191 (29.84%), Postives = 89/191 (46.60%), Query Frame = 0
BLAST of MS012255 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 ) HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09 Identity = 57/191 (29.84%), Postives = 89/191 (46.60%), Query Frame = 0
BLAST of MS012255 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08 Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of MS012255 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). ) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08 Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|