MS011871 (gene) Bitter gourd (TR) v1

Overview
NameMS011871
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex component RRP4 homolog
Locationscaffold1150: 135640 .. 138709 (-)
RNA-Seq ExpressionMS011871
SyntenyMS011871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGATTACAGATTTCTTTGAATCAAACTCAGAAAATTCGGCTCCAGAGTGCCTTAGAATCACTTGAGTCGATCTCTTTGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTATGAGGATGGCATCCTCAAGTATATAATTTCCTCAACATCTTTATATTGGAGATACTTGGATTGTATAAATGTCAGTTTGAATAATTATGTGTGAGATATGGATGCACCGAACTTTAATTGAAATTTGTATACAGGGGACACGGGACTTTTGACCTGCATGGTGAAGTGGTTGCCACTGTTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCATTACGTGCCAGGTTGTCCATGAAGCTTTGTAGTTTGATTTTCTTTGATCATGATGATAGTTTAATATCTCCCTTTCCTTGGTTTATTATTATTACCTATTTTCTAATGCAATTGTCCATGTTGGTTATTAGATATAAACCAGAGGTTGGTGATATTGTGGTAGGGCGTGTTATGGAGGTAAAACTAAATGCTTGTTATTATTTTCATAAATGAATGTAATGGCAATTTTGTGAGAAAGCAAACAAAGATAACTTATTCGGGAGTGGAGCATTATATTCTTGATGCAGAATAATGGTTTTTATAGTCTTTTTTTTTGTTGCTGCTGCTGTTAAAGTCGACCATTTTTTTGTAATAGTCATGGTTGTGATGTTGTAAATAGGAAAATGTATTACGATGCGTTTCATCTCATTTCTGTTCTGTCGTCTGATGTGGTCTTATTCAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGTCAAGCTGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGGCAAACTTCTTTTTGTAATGTATATAATAATGGCGCCTACAGTTGCGTCTAATGATGAACCACCTTGCCTTCTGCTGAATTGTAGAAAATTTTATTGAATTTATTGATAAAAATGATTTTTTTAGATTGGTTAAATTTGTGTTAAAGCTGGATTATTTGTTTGGAATTTTTTTATGTATTCTTAGAGGCGGCGAACTGCAGTAGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGTAAGTTTTATAATTCTTCCATTCACCTCAGAAAGGTGTGCCACTAATGTTCTCACGTGCCATGCATATAGTGGGTTTTCTCCTATGTTCTGACATGTTTGGAAAATGAACCTTTGTTATTATTATTATTATTATTTTGACAATTGCCTAATCCTACGATATTGGATTTTTATTTGAAGATTTTAATATTTTAAGTAGGCAGCTGTTATGGGATTTAAACCCCATAACTTTTTAACTTACCATCTTCCCACCAATTGATGGTGGTTTAATGAAGTGTTGAAACAATGACATTAGTTAATTAAGTTAAAACCTTATTTAAGACTTTTATGAATTTTTTTCTCTAAATTATTATTATTACGTTAAAATACTATTTTTGTCCATGTACTTTTAGATTTAGTTCAATTTAGTCCTTAAACTTTTAAAATATTCATTCATTTTGGTTCCGTACTATCAACGTTGATTCGTTTTAGTTCTTATATTCTCAAAATGTTCATTTTGGTCCCTAAGACTTTTAAAAAGTATATCTATTTTTGCTTATTTTTCTCACCTCTCTCAGATTCAAGTCATGCCTTGTACATTCCACAAAGGCTTAAAAACTTTTGCACTTCTGTGTACCTTGCACTGTAAACAAACACTGCTCTCACCAATAATTGTTTCACATTCTTATTTACCATTAAGAAAAGATAACATCAGCGTAACTTTTCTCAGGCAGAAGTTCGTGGTTTTCAGCATGATGGTCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGGTAAAATGAGTCTCATAGATAACTTCTAAGCTCCTGGATGTTGACGTAAAATACAAAATAAGCTTCAAAAATAGATATTCATACGCCTCTCACATTCTACTGGTTTCTTAAAGAGAGAACATTAAAATATTTGTGGAAGCACGTGAGTACTAATTTATGGAAGAATCTCCTTGGGCAAATTCTAGCAGTTAAAACGAATTGTGGAGATTAATCTAAAGTTGCACAGGAAAAAGGGAGACGAGAGGTCTGTGCCTGTGATTAAGGTGCAAAGACTTATGGGTGGGAATCATTGAGTCAATATAAATGGGAGCTAGGGAGAGGGGTTGAAGGAAGCAACAAAAAAGTATAAGATAGTATTTAAATAAAATGATTTTTGGGGCATAGAGTGATCCACTGCCAGAGGTGTGAATCGACATGAAAATTATGTCTACTTTTGATTGTTCTATTTTCCTGTCTCGTAAAAAAAAAAAAAAAAAGAAATAAATGATCGTTCTGTTTTCCTAATTTGTTCAGTATGATAAATTCTGCAAAGTCTTGGAGGCTACCTATATTTGAATATGATATCTTCGTTTCAATGGTTACTATGTTCCTGACATCAAATCTTCTGAAATCATCTCATTTTATTTCCTGTGACCATCGTAAATATTTTTTCCATAATCAATACGATTAATGTATTTTGTACTCAGCTTGAGAGAGGCCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAGCAACACTTCCATCATTTAGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGGTTTATCTGGATTGGGGAGCATGTTGATCCCGCCGAGGATATGATGATAGAAGATCAAGTTAATAAATTTGAACAAAAGGGTCCAAAGTCAGAAGGAAATTTTGGTAACCTTGAAGAGCAGGAAAGAGTATATACCCCATTAGAGACACGGCGGAATATATGCAGGGCTGCAAATGCCGTTCGGGTACTGTCTACCTTAGGTTTCATAGTTACAGTAGAAGTTATTATGGAGACAGTTAATTTAAGTCTTTCTCTGAACATCGATGTGCATGAAATGCTTGGTTCAGAGTTCTGCGTTCTCGTTGCAGAAAATGAGGTTGAACGGAGGACCTCAAGTAAGAAGAGGGGA

mRNA sequence

ATGAGAGGATTACAGATTTCTTTGAATCAAACTCAGAAAATTCGGCTCCAGAGTGCCTTAGAATCACTTGAGTCGATCTCTTTGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTATGAGGATGGCATCCTCAAGGGACACGGGACTTTTGACCTGCATGGTGAAGTGGTTGCCACTGTTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCATTACGTGCCAGGTTATATAAACCAGAGGTTGGTGATATTGTGGTAGGGCGTGTTATGGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGTCAAGCTGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTAGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGTCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGCTTGAGAGAGGCCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAGCAACACTTCCATCATTTAGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGGTTTATCTGGATTGGGGAGCATGTTGATCCCGCCGAGGATATGATGATAGAAGATCAAGTTAATAAATTTGAACAAAAGGGTCCAAAGTCAGAAGGAAATTTTGGTAACCTTGAAGAGCAGGAAAGAGTATATACCCCATTAGAGACACGGCGGAATATATGCAGGGCTGCAAATGCCGTTCGGGTACTGTCTACCTTAGGTTTCATAGTTACAGTAGAAGTTATTATGGAGACAGTTAATTTAAGTCTTTCTCTGAACATCGATGTGCATGAAATGCTTGGTTCAGAGTTCTGCGTTCTCGTTGCAGAAAATGAGGTTGAACGGAGGACCTCAAGTAAGAAGAGGGGA

Coding sequence (CDS)

ATGAGAGGATTACAGATTTCTTTGAATCAAACTCAGAAAATTCGGCTCCAGAGTGCCTTAGAATCACTTGAGTCGATCTCTTTGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTATGAGGATGGCATCCTCAAGGGACACGGGACTTTTGACCTGCATGGTGAAGTGGTTGCCACTGTTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCATTACGTGCCAGGTTATATAAACCAGAGGTTGGTGATATTGTGGTAGGGCGTGTTATGGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGTCAAGCTGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTAGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGTCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGCTTGAGAGAGGCCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAGCAACACTTCCATCATTTAGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGGTTTATCTGGATTGGGGAGCATGTTGATCCCGCCGAGGATATGATGATAGAAGATCAAGTTAATAAATTTGAACAAAAGGGTCCAAAGTCAGAAGGAAATTTTGGTAACCTTGAAGAGCAGGAAAGAGTATATACCCCATTAGAGACACGGCGGAATATATGCAGGGCTGCAAATGCCGTTCGGGTACTGTCTACCTTAGGTTTCATAGTTACAGTAGAAGTTATTATGGAGACAGTTAATTTAAGTCTTTCTCTGAACATCGATGTGCATGAAATGCTTGGTTCAGAGTTCTGCGTTCTCGTTGCAGAAAATGAGGTTGAACGGAGGACCTCAAGTAAGAAGAGGGGA

Protein sequence

MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNIDVHEMLGSEFCVLVAENEVERRTSSKKRG
Homology
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BLAST of MS011871 vs. NCBI nr
Match: XP_022155677.1 (exosome complex component RRP4 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 637.5 bits (1643), Expect = 6.4e-179
Identity = 328/329 (99.70%), Postives = 328/329 (99.70%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH
Sbjct: 14  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 73

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL
Sbjct: 74  GEVVATVCGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 133

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 134 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 193

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG
Sbjct: 194 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 253

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
           PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Sbjct: 254 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 313

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVLVAENEVERRTSSKKRG
Sbjct: 314 DVHEMLGSEFCVLVAENEVERRTSSKKRG 341

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BLAST of MS011871 vs. NCBI nr
Match: XP_022155678.1 (exosome complex component RRP4 homolog isoform X2 [Momordica charantia] >XP_022155679.1 exosome complex component RRP4 homolog isoform X2 [Momordica charantia] >XP_022155680.1 exosome complex component RRP4 homolog isoform X2 [Momordica charantia] >XP_022155681.1 exosome complex component RRP4 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 637.5 bits (1643), Expect = 6.4e-179
Identity = 328/329 (99.70%), Postives = 328/329 (99.70%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
           PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Sbjct: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVLVAENEVERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 328

[Close]
BLAST of MS011871 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 576.2 bits (1484), Expect = 1.7e-160
Identity = 291/329 (88.45%), Postives = 311/329 (94.53%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRLDINYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Sbjct: 241 SKFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of MS011871 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 576.2 bits (1484), Expect = 1.7e-160
Identity = 291/329 (88.45%), Postives = 310/329 (94.22%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRLDINYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EGNFGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+L +SLNI
Sbjct: 241 SKFEGNFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of MS011871 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 575.9 bits (1483), Expect = 2.3e-160
Identity = 291/329 (88.45%), Postives = 311/329 (94.53%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRLDINYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Sbjct: 241 SKFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.6e-119
Identity = 221/329 (67.17%), Postives = 270/329 (82.07%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MR LQ+ L+QTQK+R + A+E L+S+S  ANSDASVIV D+IPVN++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GE++ATVCGVVERV+KL+YVR LRAR YKPEVGDIVVGRV+EVA KRWR+++N++Q  VL
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRAR-YKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVL 122

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLER 180
           MLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+
Sbjct: 123 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEK 182

Query: 181 GQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQK 240
           GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++ E  
Sbjct: 183 GQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMI 242

Query: 241 GPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN 300
              S G       +E+ + PLETR+ ICR  NA+RVLS LGF VT+EVIMETVNLS S N
Sbjct: 243 SSSSTG-------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKN 302

Query: 301 IDVHEMLGSEFCVLVAENEVERRTSSKKR 329
           ID+H+MLGSEF V+VAENE ERR + +K+
Sbjct: 303 IDIHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-43
Identity = 107/258 (41.47%), Postives = 155/258 (60.08%), Query Frame = 0 

Query: 51  LKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRL 110
           ++GHGT+   G + A+V G V+RVNKLI V+ LR++ Y PE+GD+++G++ EV PKRW++
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSK-YVPEIGDLIIGKIAEVQPKRWKV 130

Query: 111 DINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQA 170
           DI   Q AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  
Sbjct: 131 DIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHT 190

Query: 171 RSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMI 230
           RS KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H    E+   
Sbjct: 191 RSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHS 250

Query: 231 EDQVNKFEQKGPKSEGNFGNLEEQERVYTPLE-TRRNICRAANAVRVL-----STLGFIV 290
              + + E++   SE  + N  ++   YT L  +R +IC    A R L     S   F  
Sbjct: 251 SVSITRLEEEA--SESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYE 310

Query: 291 TVEVIMETVNLSLSLNID 302
           +  V     +L++  N+D
Sbjct: 311 SSLVFSNLQDLTVPKNMD 321

[Close]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-42
Identity = 104/215 (48.37%), Postives = 137/215 (63.72%), Query Frame = 0 

Query: 13  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVE 72
           ++RL  A + L     + +    V+  DTI    + G ++GHGT+    +++A+V G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQ 132
           RVNKLI V+AL+ R Y  EVGDIVVGR+ EV  KRW+++ N    +VL+LSSMNLP G  
Sbjct: 64  RVNKLICVKALKTR-YNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL 123

Query: 133 RRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVK 192
           RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVK
Sbjct: 124 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK 183

Query: 193 RRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAED 227
           R+K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 RQKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-42
Identity = 99/183 (54.10%), Postives = 125/183 (68.31%), Query Frame = 0 

Query: 36  VIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVERVNKLIYVRALRARLYKPEVGDI 95
           V+  DTI    + G ++GHGT+    +++A+V G VERVNKLI V+AL+ R Y  EVGDI
Sbjct: 27  VVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTR-YIGEVGDI 86

Query: 96  VVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICA 155
           VVGR+ EV  KRW+++ N    +VL+LSSMNLP G  RRR+A DEL MR   +E D+I A
Sbjct: 87  VVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISA 146

Query: 156 EVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGF 215
           EV+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG NGF
Sbjct: 147 EVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGF 205

Query: 216 IWI 218
           IWI
Sbjct: 207 IWI 205

[Close]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-41
Identity = 122/289 (42.21%), Postives = 160/289 (55.36%), Query Frame = 0 

Query: 13  KIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLHGEVVATVCGVVE 72
           ++RL  A + L     + +    V+  DTI    + G ++GHGT+    +++A+V G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLMLSSMNLPDGIQ 132
           RVNKLI V+AL+ R Y  EVGDIVVGR+ EV  KRW+++ N    +VL+LSSMNLP G  
Sbjct: 64  RVNKLICVKALKTR-YNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL 123

Query: 133 RRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVK 192
           RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVK
Sbjct: 124 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK 183

Query: 193 RRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGPKSEGNFGNLE 252
           R+K HFH L   G  +ILG NGFIWI  +  P             E K   + G   NLE
Sbjct: 184 RQKTHFHDL-PCGASVILGNNGFIWI--YPTP-------------EHKDEDAGGFIANLE 243

Query: 253 EQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 301
                   L  R  I R  N V +L T   ++    I+     SL+  I
Sbjct: 244 P-----VALSDREVISRLRNCVVLLVTQRMMLFDTSILYCYEASLAHQI 268

[Close]
BLAST of MS011871 vs. ExPASy TrEMBL
Match: A0A6J1DNK7 (exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.1e-179
Identity = 328/329 (99.70%), Postives = 328/329 (99.70%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
           PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Sbjct: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVLVAENEVERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 328

[Close]
BLAST of MS011871 vs. ExPASy TrEMBL
Match: A0A6J1DQ00 (exosome complex component RRP4 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.1e-179
Identity = 328/329 (99.70%), Postives = 328/329 (99.70%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH
Sbjct: 14  MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 73

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVATVCGVVERVNKLIYVRALRAR YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL
Sbjct: 74  GEVVATVCGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 133

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 134 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 193

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG
Sbjct: 194 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 253

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
           PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI
Sbjct: 254 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 313

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVLVAENEVERRTSSKKRG
Sbjct: 314 DVHEMLGSEFCVLVAENEVERRTSSKKRG 341

[Close]
BLAST of MS011871 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 8.5e-161
Identity = 291/329 (88.45%), Postives = 311/329 (94.53%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRLDINYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Sbjct: 241 SKFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           DVHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 DVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of MS011871 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.1e-159
Identity = 289/327 (88.38%), Postives = 309/327 (94.50%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRLDINYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNI
Sbjct: 241 SKFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKK 328
           DVHEMLGSEFCVL AE E ERRTSSKK
Sbjct: 301 DVHEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]
BLAST of MS011871 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 2.7e-159
Identity = 294/329 (89.36%), Postives = 307/329 (93.31%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MR LQISLNQTQKIRLQ ALE LESIS KANSDASVIVADTIP+NY+DG+LKGHGT DL+
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GEVVAT+CGVVERVNKLIYVRALRAR YKPEVGDI+VGRV EVAPKRWRL+INYSQ AVL
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRAR-YKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 240
           QLLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP EDMMIEDQVNK EQKG
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240

Query: 241 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 300
            K EG FGN + QERVYTPLETR+NICR ANA+RVLS LGFI+TVEVIMETV+LS SLNI
Sbjct: 241 SKFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNI 300

Query: 301 DVHEMLGSEFCVLVAENEVERRTSSKKRG 330
           +VHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 NVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of MS011871 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 429.9 bits (1104), Expect = 1.9e-120
Identity = 221/329 (67.17%), Postives = 270/329 (82.07%), Query Frame = 0 

Query: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60
           MR LQ+ L+QTQK+R + A+E L+S+S  ANSDASVIV D+IPVN++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATVCGVVERVNKLIYVRALRARLYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 120
           GE++ATVCGVVERV+KL+YVR LRAR YKPEVGDIVVGRV+EVA KRWR+++N++Q  VL
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRAR-YKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVL 122

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLER 180
           MLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+
Sbjct: 123 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEK 182

Query: 181 GQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQK 240
           GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++ E  
Sbjct: 183 GQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMI 242

Query: 241 GPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLN 300
              S G       +E+ + PLETR+ ICR  NA+RVLS LGF VT+EVIMETVNLS S N
Sbjct: 243 SSSSTG-------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKN 302

Query: 301 IDVHEMLGSEFCVLVAENEVERRTSSKKR 329
           ID+H+MLGSEF V+VAENE ERR + +K+
Sbjct: 303 IDIHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:
BLAST of MS011871 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155677.16.4e-17999.70exosome complex component RRP4 homolog isoform X1 [Momordica charantia][more]
XP_022155678.16.4e-17999.70exosome complex component RRP4 homolog isoform X2 [Momordica charantia] >XP_0221... [more]
XP_022995373.11.7e-16088.45exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom... [more]
XP_023533481.11.7e-16088.45exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
KAG6606437.12.3e-16088.45Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of MS011871 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVT72.6e-11967.17Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
Q097041.4e-4341.47Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
Q2KID01.5e-4248.37Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
Q138682.6e-4254.10Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
Q8VBV31.7e-4142.21Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
BLAST of MS011871 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNK73.1e-17999.70exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673... [more]
A0A6J1DQ003.1e-17999.70exosome complex component RRP4 homolog isoform X1 OS=Momordica charantia OX=3673... [more]
A0A6J1K7S08.5e-16188.45exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909... [more]
A0A6J1EXY12.1e-15988.38exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1HGD92.7e-15989.36exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
BLAST of MS011871 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03360.11.9e-12067.17ribosomal RNA processing 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 30..86
e-value: 3.5E-16
score: 60.4
NoneNo IPR availableGENE3D2.40.50.140coord: 87..178
e-value: 1.1E-17
score: 65.8
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 10..324
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 88..177
e-value: 2.90612E-32
score: 113.413
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 44..82
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 180..220
e-value: 2.2E-12
score: 47.2
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 10..324
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 87..177
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 180..324

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011871.1MS011871.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding