MS011516 (gene) Bitter gourd (TR) v1

Overview


Name	MS011516
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	scaffold239: 2537000 .. 2537265 (+)
RNA-Seq Expression	MS011516
Synteny	MS011516

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAGGGGAAAGAGACATCACTTTAGGCTTTGTTGATTTACTTCGTGATGAGTATGTTGAAAAAGATCGAAGCCGCGGTATTTATTTCACTCAAGATTATGGGTTGGTATTCACGTTTGGTATATGCCTGCTCTGACCGAGATTTTTGGAGATGATTTTGTACTACAATTCGGCGGAGGAACTTTAGAGCACCCTTGGGGTAATGCACCTAGTGCCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAA

mRNA sequence

ATTGAAGGGGAAAGAGACATCACTTTAGGCTTTGTTGATTTACTTCGTGATGAGTATGTTGAAAAAGATCGAAGCCGCGGTATTTATTTCACTCAATGGGTTGGTATTCACGTTTGGTATATGCCTGCTCTGACCGAGATTTTTGGAGATGATTTTGTACTACAATTCGGCGGAGGAACTTTAGAGCACCCTTGGGGTAATGCACCTAGTGCCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAA

Coding sequence (CDS)

ATTGAAGGGGAAAGAGACATCACTTTAGGCTTTGTTGATTTACTTCGTGATGAGTATGTTGAAAAAGATCGAAGCCGCGGTATTTATTTCACTCAATGGGTTGGTATTCACGTTTGGTATATGCCTGCTCTGACCGAGATTTTTGGAGATGATTTTGTACTACAATTCGGCGGAGGAACTTTAGAGCACCCTTGGGGTAATGCACCTAGTGCCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAA

Protein sequence

IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQWVGIHVWYMPALTEIFGDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE

Homology

[Close]

BLAST of MS011516 vs. NCBI nr
Match: AAY90070.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dendrosicyos socotranus])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+++EKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 314 LEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 373

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDDFVLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 374 GDDFVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 412

[Close]

BLAST of MS011516 vs. NCBI nr
Match: ALX36892.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 290 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 349

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 350 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 388

[Close]

BLAST of MS011516 vs. NCBI nr
Match: ABG24929.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 290 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 349

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 350 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 388

[Close]

BLAST of MS011516 vs. NCBI nr
Match: YP_009456069.1 (ribulose-1 [Momordica charantia] >AUJ21836.1 ribulose-1 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 335 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 394

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 395 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 433

[Close]

BLAST of MS011516 vs. NCBI nr
Match: AMD82865.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Rumex flexuosus])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 326 LEGERDITLGFVDLLRDDYVEKDRSRGIYFTQPWVSLPGVIPVASGGIHVWHMPALTEIF 385

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 386 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 424

[Close]

BLAST of MS011516 vs. ExPASy Swiss-Prot
Match: P28434 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nepenthes alata OX=4376 GN=rbcL PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.4e-40
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 325 LEGERDITLGFVDLLRDDYVEKDRSRGIYFTQFWVSIPGVLPVASGGIHVWHMPALTEIF 384

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 385 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 423

[Close]

BLAST of MS011516 vs. ExPASy Swiss-Prot
Match: Q05986 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Callitriche heterophylla OX=13381 GN=rbcL PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-39
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 301 LEGERDITLGFVDLLRDDYIEKDRSRGIYFTQDWVSLPGVIPVASGGIHVWHMPALTEIF 360

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 361 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 399

[Close]

BLAST of MS011516 vs. ExPASy Swiss-Prot
Match: P28409 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Drosera peltata OX=4369 GN=rbcL PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-39
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 326 LEGERDITLGFVDLLRDDYIEKDRSRGIYFTQFWVSLPGVLPVASGGIHVWHMPALTEIF 385

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 386 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 424

[Close]

BLAST of MS011516 vs. ExPASy Swiss-Prot
Match: Q05994 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Villarsia calthifolia OX=13756 GN=rbcL PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-39
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+Y+EKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 301 LEGERDITLGFVDLLRDDYIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 360

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 361 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 399

[Close]

BLAST of MS011516 vs. ExPASy Swiss-Prot
Match: P43225 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Arthropteris beckleri OX=29631 GN=rbcL PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.1e-39
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERD+TLGFVDLLRD+Y+EKDRSRG+YFTQ WV           GIHVW+MPALTEIF
Sbjct: 314 LEGERDVTLGFVDLLRDDYIEKDRSRGVYFTQDWVSMPGVIPVASGGIHVWHMPALTEIF 373

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 374 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 412

[Close]

BLAST of MS011516 vs. ExPASy TrEMBL
Match: A0A0U3MZI0 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Momordica charantia OX=3673 GN=rbcL PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 290 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 349

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 350 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 388

[Close]

BLAST of MS011516 vs. ExPASy TrEMBL
Match: A5X4E1 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Momordica charantia OX=3673 GN=rbcL PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 290 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 349

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 350 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 388

[Close]

BLAST of MS011516 vs. ExPASy TrEMBL
Match: A0A2I6C015 (Ribulose bisphosphate carboxylase large chain OS=Momordica charantia OX=3673 GN=rbcL PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 82/99 (82.83%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRDEYVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 335 LEGERDITLGFVDLLRDEYVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 394

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 395 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 433

[Close]

BLAST of MS011516 vs. ExPASy TrEMBL
Match: Q2HJK4 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dendrosicyos socotranus OX=229694 GN=rbcL PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+++EKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 314 LEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 373

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDDFVLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 374 GDDFVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 412

[Close]

BLAST of MS011516 vs. ExPASy TrEMBL
Match: A0A291PUL7 (Ribulose bisphosphate carboxylase large chain OS=Cryptocarya chinensis OX=128609 GN=rbcL PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EGERDITLGFVDLLRD+YVEKDRSRGIYFTQ WV           GIHVW+MPALTEIF
Sbjct: 335 LEGERDITLGFVDLLRDDYVEKDRSRGIYFTQDWVSMPGVLPVASGGIHVWHMPALTEIF 394

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 395 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 433

[Close]

BLAST of MS011516 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 157.1 bits (396), Expect = 6.2e-39
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1   IEGERDITLGFVDLLRDEYVEKDRSRGIYFTQ-WV-----------GIHVWYMPALTEIF 60
           +EG+R+ TLGFVDLLRD+YVEKDRSRGI+FTQ WV           GIHVW+MPALTEIF
Sbjct: 335 LEGDRESTLGFVDLLRDDYVEKDRSRGIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 394

Query: 61  GDDFVLQFGGGTLEHPWGNAPSAVANRVALEACVQARNE 88
           GDD VLQFGGGTL HPWGNAP AVANRVALEACVQARNE
Sbjct: 395 GDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNE 433

The following BLAST results are available for this feature:

BLAST of MS011516 vs. NCBI nr


Match Name	E-value	Identity	Description
AAY90070.1	3.2e-37	80.81	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dendrosi...	[more]
ALX36892.1	3.2e-37	82.83	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordic...	[more]
ABG24929.1	3.2e-37	82.83	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Momordic...	[more]
YP_009456069.1	3.2e-37	82.83	ribulose-1 [Momordica charantia] >AUJ21836.1 ribulose-1 [Momordica charantia]	[more]
AMD82865.1	7.1e-37	81.82	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Rumex fl...	[more]

BLAST of MS011516 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28434	9.4e-40	81.82	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nepenthes alata OX=4...	[more]
Q05986	1.2e-39	80.81	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Callitriche heteroph...	[more]
P28409	1.2e-39	80.81	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Drosera peltata OX=4...	[more]
Q05994	1.2e-39	80.81	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Villarsia calthifoli...	[more]
P43225	2.1e-39	78.79	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Arthropteris beckler...	[more]

BLAST of MS011516 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0U3MZI0	1.6e-37	82.83	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Momordica charantia ...	[more]
A5X4E1	1.6e-37	82.83	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Momordica charantia ...	[more]
A0A2I6C015	1.6e-37	82.83	Ribulose bisphosphate carboxylase large chain OS=Momordica charantia OX=3673 GN=...	[more]
Q2HJK4	1.6e-37	80.81	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dendrosicyos socotra...	[more]
A0A291PUL7	3.5e-37	81.82	Ribulose bisphosphate carboxylase large chain OS=Cryptocarya chinensis OX=128609...	[more]

BLAST of MS011516 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	6.2e-39	77.78	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 1..87 e-value: 4.0E-24 score: 87.0
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 2..86
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 1..85 e-value: 2.5E-17 score: 63.0
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 1..87
None	No IPR available	PANTHER	PTHR42704:SF8	RIBULOSE BISPHOSPHATE CARBOXYLASE, LARGE SUBUNIT-RELATED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011516.1	MS011516.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000287	magnesium ion binding