MS010376 (gene) Bitter gourd (TR) v1

Overview
NameMS010376
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold878: 514641 .. 514922 (-)
RNA-Seq ExpressionMS010376
SyntenyMS010376
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCAGCGGAGATCGAAGCCGTTGGAGAAGAATTTGCCATGGGAAGTGGTGATGAGAACGGAGCCGGGGGAGGCTTGGGCCCTGATTTGGGAAAGAGCGGCGAGGATGGAGTCGATTAAGGATGGGCTGAGGCGGTGCTCGTCGTCTCCGGTCAGAGTCAGGATGAACAAATTGCCTCGCTTCTCAACTGTGCACATTTTCGTAACCCTTATTCAATTCCCCCACCAATTACCAAATTCCTCAATTTATCCTGAAACAAAAATAGCGTTTCACCAACAAANA

mRNA sequence

GCCCAGCGGAGATCGAAGCCGTTGGAGAAGAATTTGCCATGGGAAGTGGTGATGAGAACGGAGCCGGGGGAGGCTTGGGCCCTGATTTGGGAAAGAGCGGCGAGGATGGAGTCGATTAAGGATGGGCTGAGGCGGTGCTCGTCGTCTCCGGTCAGAGTCAGGATGAACAAATTGCCTCGCTTCTCAACTGTGCACATTTTCGTAACCCTTATTCAATTCCCCCACCAATTACCAAATTCCTCAATTTATCCTGAAACAAAAATAGCGTTTCACCAACAAANA

Coding sequence (CDS)

GCCCAGCGGAGATCGAAGCCGTTGGAGAAGAATTTGCCATGGGAAGTGGTGATGAGAACGGAGCCGGGGGAGGCTTGGGCCCTGATTTGGGAAAGAGCGGCGAGGATGGAGTCGATTAAGGATGGGCTGAGGCGGTGCTCGTCGTCTCCGGTCAGAGTCAGGATGAACAAATTGCCTCGCTTCTCAACTGTGCACATTTTCGTAACCCTTATTCAATTCCCCCACCAATTACCAAATTCCTCAATTTATCCTGAAACAAAAATAGCGTTTCACCAACAAANA

Protein sequence

AQRRSKPLEKNLPWEVVMRTEPGEAWALIWERAARMESIKDGLRRCSSSPVRVRMNKLPRFSTVHIFVTLIQFPHQLPNSSIYPETKIAFHQQX
Homology
[Close]
BLAST of MS010376 vs. NCBI nr
Match: XP_042942924.1 (uncharacterized protein LOC122277109 [Carya illinoinensis])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 1  AQRRSKPLEKNLPWEVVMRTEPGEAWALIWERAARMESIKDGLRRCSSSPVRVR 55
          AQ RS PLEKNLPW V++R E   AW L WER   M  +  GL+RCS SPV VR
Sbjct: 39 AQDRSNPLEKNLPWAVLVRVESRTAWDLTWER-IEMREMTVGLKRCSPSPVSVR 91

[Close]
BLAST of MS010376 vs. ExPASy TrEMBL
Match: A0A0A0L773 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.2e-16
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 4  RSKPLEKNLPWEVVMRTEPGEAW--ALIWERAARMESIKDGLRRCSSSPVRVRMNKLPRF 63
          RS+PLEKNLPW+VV+RTEPGEA   AL W+RA  ME IKDG  +CS  PV VRMN  PRF
Sbjct: 10 RSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSVRMNSFPRF 69

Query: 64 STVHIFVTLIQ----FPHQLPN 80
          S +HIFV  +        Q+PN
Sbjct: 70 SILHIFVRKLSGSFTINDQIPN 91

The following BLAST results are available for this feature:
BLAST of MS010376 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_042942924.11.1e-0659.26uncharacterized protein LOC122277109 [Carya illinoinensis][more]
BLAST of MS010376 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS010376 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7736.2e-1659.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of MS010376 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010376.1MS010376.1mRNA