MS010375 (gene) Bitter gourd (TR) v1

Overview


Name	MS010375
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold878: 512338 .. 512532 (-)
RNA-Seq Expression	MS010375
Synteny	MS010375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGATCCAGGCCGTTGGAGAAGAATTTGCCGTGGGCAGTTGTGACGAGAACTGAACCGGGGGAGGCTTGGGCCTTGACTCGGGAAAGAGCGGCCAGGATGGATTCGATGAAGGGTGGGCTCAGCCGGTGCTCGTCGTCGCCGGTCAGAGTTAGAATGAAAAGCTCGCCGTGCTTCTCAATGCTGCACAGTTTC

mRNA sequence

GGGAGATCCAGGCCGTTGGAGAAGAATTTGCCGTGGGCAGTTGTGACGAGAACTGAACCGGGGGAGGCTTGGGCCTTGACTCGGGAAAGAGCGGCCAGGATGGATTCGATGAAGGGTGGGCTCAGCCGGTGCTCGTCGTCGCCGGTCAGAGTTAGAATGAAAAGCTCGCCGTGCTTCTCAATGCTGCACAGTTTC

Coding sequence (CDS)

GGGAGATCCAGGCCGTTGGAGAAGAATTTGCCGTGGGCAGTTGTGACGAGAACTGAACCGGGGGAGGCTTGGGCCTTGACTCGGGAAAGAGCGGCCAGGATGGATTCGATGAAGGGTGGGCTCAGCCGGTGCTCGTCGTCGCCGGTCAGAGTTAGAATGAAAAGCTCGCCGTGCTTCTCAATGCTGCACAGTTTC

Protein sequence

GRSRPLEKNLPWAVVTRTEPGEAWALTRERAARMDSMKGGLSRCSSSPVRVRMKSSPCFSMLHSF

Homology

[Close]

BLAST of MS010375 vs. NCBI nr
Match: XP_042942924.1 (uncharacterized protein LOC122277109 [Carya illinoinensis])

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-06
Identity = 34/55 (61.82%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 2  RSRPLEKNLPWAVVTRTEPGEAWALTRERAARMDSMKGGLSRCSSSPVRVRMKSS 57
          RS PLEKNLPWAV+ R E   AW LT ER   M  M  GL RCS SPV VR K S
Sbjct: 42 RSNPLEKNLPWAVLVRVESRTAWDLTWER-IEMREMTVGLKRCSPSPVSVRKKIS 95

[Close]

BLAST of MS010375 vs. ExPASy TrEMBL
Match: A0A0A0L773 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  GRSRPLEKNLPWAVVTRTEPGEAW--ALTRERAARMDSMKGGLSRCSSSPVRVRMKSSPC 60
          GRSRPLEKNLPW VV RTEPGEA   ALT +RA  M+ +K G S+CS  PV VRM S P 
Sbjct: 9  GRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSVRMNSFPR 68

Query: 61 FSMLHSF 66
          FS+LH F
Sbjct: 69 FSILHIF 75

The following BLAST results are available for this feature:

BLAST of MS010375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042942924.1	6.4e-06	61.82	uncharacterized protein LOC122277109 [Carya illinoinensis]	[more]

BLAST of MS010375 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L773	3.8e-12	65.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1	[more]

BLAST of MS010375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010375.1	MS010375.1	mRNA