MS010371 (gene) Bitter gourd (TR) v1

Overview


Name	MS010371
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold878: 499747 .. 500046 (-)
RNA-Seq Expression	MS010371
Synteny	MS010371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATGCAGAGAGAAGAGGCGCCGGCGATTCAGTGAGCCAGGAGGCGACCCGGCTGCAGAGGCGGGCTCCGTCGTCGATTCAGATAAGCCGGCCGGCGAGCTGGAACGTGGCGATCCCGTTGCTATCCCCGCTGGTGTCTCCTTGCTTGGAGCAAGTCGATGTTTTGATGGGTGAGAACAAGGCGAGGGAGGAGGCGAGGTCGCGGGACAAACCGGCCACCTTTACAAAGTGGAAGCACCCGGCGGCTCCATTCTGTTATGGGCCTGTCCAGAGGACCACCCCCTTTGTGCCCGTC

mRNA sequence

ATGGGCGATGCAGAGAGAAGAGGCGCCGGCGATTCAGTGAGCCAGGAGGCGACCCGGCTGCAGAGGCGGGCTCCGTCGTCGATTCAGATAAGCCGGCCGGCGAGCTGGAACGTGGCGATCCCGTTGCTATCCCCGCTGGTGTCTCCTTGCTTGGAGCAAGTCGATGTTTTGATGGGTGAGAACAAGGCGAGGGAGGAGGCGAGGTCGCGGGACAAACCGGCCACCTTTACAAAGTGGAAGCACCCGGCGGCTCCATTCTGTTATGGGCCTGTCCAGAGGACCACCCCCTTTGTGCCCGTC

Coding sequence (CDS)

ATGGGCGATGCAGAGAGAAGAGGCGCCGGCGATTCAGTGAGCCAGGAGGCGACCCGGCTGCAGAGGCGGGCTCCGTCGTCGATTCAGATAAGCCGGCCGGCGAGCTGGAACGTGGCGATCCCGTTGCTATCCCCGCTGGTGTCTCCTTGCTTGGAGCAAGTCGATGTTTTGATGGGTGAGAACAAGGCGAGGGAGGAGGCGAGGTCGCGGGACAAACCGGCCACCTTTACAAAGTGGAAGCACCCGGCGGCTCCATTCTGTTATGGGCCTGTCCAGAGGACCACCCCCTTTGTGCCCGTC

Protein sequence

MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGENKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV

Homology

[Close]

BLAST of MS010371 vs. NCBI nr
Match: XP_022143991.1 (uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 8.8e-47
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE 60
           MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE
Sbjct: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE 60

Query: 61  NKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           NKAREEARSRDKPATFT+WKHPAAPF YGPVQRTTPFVPV
Sbjct: 61  NKAREEARSRDKPATFTRWKHPAAPFYYGPVQRTTPFVPV 100

[Close]

BLAST of MS010371 vs. NCBI nr
Match: KAE8650334.1 (hypothetical protein Csa_009641 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/105 (55.24%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSP-----CLEQVD 60
           M DAER+ A    +   TRLQ +AP+SI+I R  +WNVAIPLLSPLVSP        +  
Sbjct: 1   MSDAERKTA---TTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKM 60

Query: 61  VLMGENKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           + M EN AREE     K  TFTKW+HPAAPF Y PV R  PFVPV
Sbjct: 61  LSMAENNAREET----KGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of MS010371 vs. NCBI nr
Match: KAB1219144.1 (hypothetical protein CJ030_MR3G008389 [Morella rubra] >KAB1219148.1 hypothetical protein CJ030_MR3G008385 [Morella rubra])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MGDAERRGAGDSVS-QEATRLQRRAPSSIQISRPAS-WNVAIPLLSPLVS--PCLEQVDV 60
           M DA+   +G++ + ++ +RLQRRAP+S+QIS PAS WNVAIPLLSPL S     + V  
Sbjct: 1   MADAQWSKSGNAGNRRQPSRLQRRAPASLQISAPASNWNVAIPLLSPLASSPTSPKLVTD 60

Query: 61  LMGENKAREEAR---SRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            MGE KAREE+R   +  +   F KW+HPAAPFCY P  R  PFVPV
Sbjct: 61  RMGEMKAREESRQQGAEHEKVVFKKWQHPAAPFCYEPAPRVRPFVPV 107

[Close]

BLAST of MS010371 vs. NCBI nr
Match: PON32321.1 (hypothetical protein PanWU01x14_362290 [Parasponia andersonii])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDV-LMG 60
           M D     +G  + ++ +RLQRRAP+S+QIS  + WNVAIPLLSPL SP      +    
Sbjct: 1   MADVTIPTSGACLRRQPSRLQRRAPASLQISPVSDWNVAIPLLSPLASPSSSPKALDRTA 60

Query: 61  ENKAREEAR----SRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           ENK+RE+ R      DKP  F KW+HPAAPFCY P     PFVPV
Sbjct: 61  ENKSREDQRRLVAEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

[Close]

BLAST of MS010371 vs. NCBI nr
Match: PON98714.1 (hypothetical protein TorRG33x02_056140 [Trema orientale])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSP-----CLEQVD 60
           M D  R  +G    ++ +RLQRRAP+S+QI   + WNVAIPLLSPL SP      L++  
Sbjct: 1   MADVTRPTSGACPRRQPSRLQRRAPASLQIRPVSDWNVAIPLLSPLASPSSSPKALDRTA 60

Query: 61  VLMGENKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            +      R +    DKP  F KW+HPAAPFCY P     PFVPV
Sbjct: 61  EIKSREDQRRQVAEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

[Close]

BLAST of MS010371 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-09
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQE--ATRLQRRAPS-SIQISRPASWNVAIPLLSPL---VSPCLEQV 60
           M    +R +  + S E   ++LQRRAPS  I+ +  ++WNVAIPLLSPL   ++   +Q 
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQS 78

Query: 61  DVLMGENKAREEARSR-DKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            V   +NK          K   F KW+HPA+PFCY P     PF+ V
Sbjct: 79  HVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of MS010371 vs. ExPASy TrEMBL
Match: A0A6J1CRZ0 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111013769 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE 60
           MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE
Sbjct: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDVLMGE 60

Query: 61  NKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           NKAREEARSRDKPATFT+WKHPAAPF YGPVQRTTPFVPV
Sbjct: 61  NKAREEARSRDKPATFTRWKHPAAPFYYGPVQRTTPFVPV 100

[Close]

BLAST of MS010371 vs. ExPASy TrEMBL
Match: A0A0A0L8D3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.0e-17
Identity = 58/105 (55.24%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSP-----CLEQVD 60
           M DAER+ A    +   TRLQ +AP+SI+I R  +WNVAIPLLSPLVSP        +  
Sbjct: 1   MSDAERKTA---TTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKM 60

Query: 61  VLMGENKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           + M EN AREE     K  TFTKW+HPAAPF Y PV R  PFVPV
Sbjct: 61  LSMAENNAREET----KGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of MS010371 vs. ExPASy TrEMBL
Match: A0A6A1W1M7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G008385 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MGDAERRGAGDSVS-QEATRLQRRAPSSIQISRPAS-WNVAIPLLSPLVS--PCLEQVDV 60
           M DA+   +G++ + ++ +RLQRRAP+S+QIS PAS WNVAIPLLSPL S     + V  
Sbjct: 1   MADAQWSKSGNAGNRRQPSRLQRRAPASLQISAPASNWNVAIPLLSPLASSPTSPKLVTD 60

Query: 61  LMGENKAREEAR---SRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            MGE KAREE+R   +  +   F KW+HPAAPFCY P  R  PFVPV
Sbjct: 61  RMGEMKAREESRQQGAEHEKVVFKKWQHPAAPFCYEPAPRVRPFVPV 107

[Close]

BLAST of MS010371 vs. ExPASy TrEMBL
Match: A0A2P5A713 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCLEQVDV-LMG 60
           M D     +G  + ++ +RLQRRAP+S+QIS  + WNVAIPLLSPL SP      +    
Sbjct: 1   MADVTIPTSGACLRRQPSRLQRRAPASLQISPVSDWNVAIPLLSPLASPSSSPKALDRTA 60

Query: 61  ENKAREEAR----SRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
           ENK+RE+ R      DKP  F KW+HPAAPFCY P     PFVPV
Sbjct: 61  ENKSREDQRRLVAEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

[Close]

BLAST of MS010371 vs. ExPASy TrEMBL
Match: A0A2P5FLQ7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_056140 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.1e-16
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSP-----CLEQVD 60
           M D  R  +G    ++ +RLQRRAP+S+QI   + WNVAIPLLSPL SP      L++  
Sbjct: 1   MADVTRPTSGACPRRQPSRLQRRAPASLQIRPVSDWNVAIPLLSPLASPSSSPKALDRTA 60

Query: 61  VLMGENKAREEARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            +      R +    DKP  F KW+HPAAPFCY P     PFVPV
Sbjct: 61  EIKSREDQRRQVAEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

[Close]

BLAST of MS010371 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 7  RGAGDSVSQEATRLQRRAPSSIQISR-PASWNVAIPLLSPLVSPCLEQVDVLMGENKARE 66
          R    S +++++RLQRRAP  ++I+   A+W VAIPLLSP  SP  +   V+  E   + 
Sbjct: 6  RNISGSGNRKSSRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMKREE--QR 65

Query: 67 EARSRDKPATFTKWKHPAAPFCYGP 91
            +  +KP  F KW+HPAAPF Y P
Sbjct: 66 WGKEAEKPPVFKKWQHPAAPFYYQP 88

[Close]

BLAST of MS010371 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-10
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MGDAERRGAGDSVSQE--ATRLQRRAPS-SIQISRPASWNVAIPLLSPL---VSPCLEQV 60
           M    +R +  + S E   ++LQRRAPS  I+ +  ++WNVAIPLLSPL   ++   +Q 
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQS 78

Query: 61  DVLMGENKAREEARSR-DKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            V   +NK          K   F KW+HPA+PFCY P     PF+ V
Sbjct: 79  HVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of MS010371 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 9   AGDSVSQEATRLQRRAPSSIQISRPA--SWNVAIPLLSPL-VSPCLEQVDVLMGENKARE 68
           +GD   Q +  L+R     I  + PA  +WN AIPLLSPL +SP    VD    E K + 
Sbjct: 14  SGDLRRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPPVE-KNQS 73

Query: 69  EARSRDKPATFTKWKHPAAPFCYGPVQRTTPFVPV 101
            A + +K   F KW+HPAAPF Y       PFVPV
Sbjct: 74  TAVAVEKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

The following BLAST results are available for this feature:

BLAST of MS010371 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143991.1	8.8e-47	98.00	uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia]	[more]
KAE8650334.1	1.2e-16	55.24	hypothetical protein Csa_009641 [Cucumis sativus]	[more]
KAB1219144.1	2.1e-16	54.21	hypothetical protein CJ030_MR3G008389 [Morella rubra] >KAB1219148.1 hypothetical...	[more]
PON32321.1	3.6e-16	50.48	hypothetical protein PanWU01x14_362290 [Parasponia andersonii]	[more]
PON98714.1	1.0e-15	46.67	hypothetical protein TorRG33x02_056140 [Trema orientale]	[more]

BLAST of MS010371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN02	2.6e-09	39.25	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS010371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRZ0	4.2e-47	98.00	uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=...	[more]
A0A0A0L8D3	6.0e-17	55.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1	[more]
A0A6A1W1M7	1.0e-16	54.21	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G008385 PE=4 SV=1	[more]
A0A2P5A713	1.7e-16	50.48	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE...	[more]
A0A2P5FLQ7	5.1e-16	46.67	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_056140 PE=4 SV...	[more]

BLAST of MS010371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04330.1	8.2e-11	43.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G14450.1	1.8e-10	39.25	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT3G23170.1	2.9e-08	43.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33912:SF2	PUTATIVE-RELATED	coord: 1..100
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010371.1	MS010371.1	mRNA