MS010195 (gene) Bitter gourd (TR) v1

Overview


Name	MS010195
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	scaffold391: 604484 .. 605780 (+)
RNA-Seq Expression	MS010195
Synteny	MS010195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGTCGGAGCTTCATTTGTTGTGGGTGCGCCGGTGCTGGACTCGCCGGCTTTGTGTCTGGACTCGCCGCCGATTACCAGCATGAGTCTCAGAAGTGGTGGGGATTTGGTTCTGCGTAGGAAATCCAAAGCTAAGAATCGCTTGGCCATGCCTGGATCAACGTTGGATTTGAGAAGTTCGTTCGTTAATTCCGGTGGCGAGTGGCGGCTCTCCGCCGGTGCCGTTGGCCACCGGAGCCGGAGGAACCAACGCCGGAATCGGAGGCTTGTTATTGCCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGACGATGTCAAAATGGTATGAATATGATATGACTCTTCTTCAATGGAAATTTTCTCAATCTTTGGTCTCCTGAATGTTGAATGTTTTTGGAACTTGGATTTTGCATTTTGACAATGGCTGTCTCTGTCTTTGCATCTTGTTCTAGATATTTGATGAATAAAATAACCTGAAAAGGGACAAAAGGAAATAAGCAAGAGAACTTATTTTAGCTTCCATCTTGTTTCTGTTTCTGATAATTGATGTCTTCCTCTGTTTCTTAAGTAGAGTAAGTTTTATAGAACATGACATTATTTTAAGCTTACCAGAGGCCGTCTACTTGCAGCAAATACAGAATTATTTCACATACAAGGCTGTGAGGACAGTTTTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGAGTAAGTGAAGCCTTTCACTCTAGTTTTTGTGAAGTTAACTCATCAAGACTTCCAATGTGAATGCTTAAACTATCCCTAACTTTCTGGAAATCAAAACAGTGTTTCCACAACAAAACACATTTCCATTTCCAAACCTAATCTTGAATTTCGTTTTACTACATCAACAGTTTTGTTACGAATCACAAGCCCGGGGATGGAAAGCGTTTCATCCGAACCCTCGTAAAGGTAGTATTGAAATCTTTAGATTCTTGAGATCTGAAAAGAGCACTCTCTTTTCATGTAAATATATTGGATGTTTATGCATATGTTAACAGGAGAAGCAGGACTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATGGCAAATGGGTTAAGGTAAGGACAAGCTTGACATTTTGAAGACCAATTTATTTGTTGGAAGCATTTTAAGAACATGTATTGATTGTGTTTTACTGTTGTTTGTTGCATAGAAATGTGATCATGCTGAAATATACAAAGAGATCTCTGACGAGAACTTGGACTTGATGCGAGAACGACTAATGGAGACCGTGATATGGCCTTCGGAGGAC

mRNA sequence

GCGGTCGGAGCTTCATTTGTTGTGGGTGCGCCGGTGCTGGACTCGCCGGCTTTGTGTCTGGACTCGCCGCCGATTACCAGCATGAGTCTCAGAAGTGGTGGGGATTTGGTTCTGCGTAGGAAATCCAAAGCTAAGAATCGCTTGGCCATGCCTGGATCAACGTTGGATTTGAGAAGTTCGTTCGTTAATTCCGGTGGCGAGTGGCGGCTCTCCGCCGGTGCCGTTGGCCACCGGAGCCGGAGGAACCAACGCCGGAATCGGAGGCTTGTTATTGCCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGACGATGTCAAAATGCAAATACAGAATTATTTCACATACAAGGCTGTGAGGACAGTTTTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGATTTTGTTACGAATCACAAGCCCGGGGATGGAAAGCGTTTCATCCGAACCCTCGTAAAGGAGAAGCAGGACTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATGGCAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATCTCTGACGAGAACTTGGACTTGATGCGAGAACGACTAATGGAGACCGTGATATGGCCTTCGGAGGAC

Coding sequence (CDS)

GCGGTCGGAGCTTCATTTGTTGTGGGTGCGCCGGTGCTGGACTCGCCGGCTTTGTGTCTGGACTCGCCGCCGATTACCAGCATGAGTCTCAGAAGTGGTGGGGATTTGGTTCTGCGTAGGAAATCCAAAGCTAAGAATCGCTTGGCCATGCCTGGATCAACGTTGGATTTGAGAAGTTCGTTCGTTAATTCCGGTGGCGAGTGGCGGCTCTCCGCCGGTGCCGTTGGCCACCGGAGCCGGAGGAACCAACGCCGGAATCGGAGGCTTGTTATTGCCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGACGATGTCAAAATGCAAATACAGAATTATTTCACATACAAGGCTGTGAGGACAGTTTTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGATTTTGTTACGAATCACAAGCCCGGGGATGGAAAGCGTTTCATCCGAACCCTCGTAAAGGAGAAGCAGGACTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATGGCAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATCTCTGACGAGAACTTGGACTTGATGCGAGAACGACTAATGGAGACCGTGATATGGCCTTCGGAGGAC

Protein sequence

AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSSFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVKKCDHAEIYKEISDENLDLMRERLMETVIWPSED

Homology

[Close]

BLAST of MS010195 vs. NCBI nr
Match: XP_022148835.1 (chaperonin-like RbcX protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 428.7 bits (1101), Expect = 2.9e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS 60
           AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS
Sbjct: 3   AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS 62

Query: 61  FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR 120
           FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR
Sbjct: 63  FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR 122

Query: 121 TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK 180
           TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK
Sbjct: 123 TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK 182

Query: 181 KCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KCDHAEIYKEISDENLDLMRERLMETVIWPSED
Sbjct: 183 KCDHAEIYKEISDENLDLMRERLMETVIWPSED 215

[Close]

BLAST of MS010195 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 178/215 (82.79%), Postives = 191/215 (88.84%), Query Frame = 0


Query: 2   VGASFVVGAPVLDS---PALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLR 61
           VGA FV GAPV+DS   P LCLDS P+T+MSLRS GDLVL R+SKAK+ LA+    +DLR
Sbjct: 2   VGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAV-SRLVDLR 61

Query: 62  SSFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKA 121
           SSFVNSG EW+LSA   GHR RRNQRRNRRLV+ NEFAGQYE+SFDDVKMQI NYFTYKA
Sbjct: 62  SSFVNSGSEWQLSASG-GHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKA 121

Query: 122 VRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKW 181
           V+TVLNQLYEMNPTQYRWFYDFV NHKP DGKRFIRTLVKEKQDLAERVMITRLHLY KW
Sbjct: 122 VKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKW 181

Query: 182 VKKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           VKKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of MS010195 vs. NCBI nr
Match: KAA0041415.1 (RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.8e-92
Identity = 177/214 (82.71%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 2   VGASFVVGAPVLDSPALC--LDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DSP  C   DS P+T+MSLRSGGDLVL+RKSK K+  +    ++DLRS
Sbjct: 2   VGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKS-YSTVSKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG    RSRRNQRRNRRLVI NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNFGDEWQLSAGGC-RRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. NCBI nr
Match: XP_004142113.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypothetical protein Csa_018190 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 8.5e-92
Identity = 176/214 (82.24%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 2   VGASFVVGAPVLDS--PALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DS  P L  DS P+T+MSLRSGGDLVL+RKSKAK+ L +   ++DLRS
Sbjct: 2   VGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTV-SKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG  G +S+RNQRRNRRLV+ NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNLGDEWQLSAGG-GRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYK ISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. NCBI nr
Match: XP_008449714.1 (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 176/214 (82.24%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 2   VGASFVVGAPVLDSPALC--LDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DSP  C   DS P+T+MSLRSGGDLVL+RKSK K+  +    ++DLRS
Sbjct: 2   VGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKS-YSTVSKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG    +SRRNQRRNRRLVI NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNFGDEWQLSAGGC-RQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-57
Identity = 127/216 (58.80%), Postives = 155/216 (71.76%), Query Frame = 0


Query: 2   VGASFVVGAPVLD---SPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLR 61
           V A FVVG+PV+D   SP LCLD+   T+ ++R       R+K   K R       L+L 
Sbjct: 2   VSAWFVVGSPVMDSSSSPCLCLDAH--TTGTIR-------RKKILGKAR------NLELG 61

Query: 62  SSFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANE-FAGQYEDSFDDVKMQIQNYFTYK 121
           SSF  S   +RLS   V   SR   R++++L+I NE  AG Y+D+F DV+ QI NYFTYK
Sbjct: 62  SSFTGSRIVFRLSPKRV---SRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYK 121

Query: 122 AVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGK 181
           AVRTVL+QLYEMNP QY WFY+ +  ++P DGKRF+R L KE Q+LAERVMITRLHLYGK
Sbjct: 122 AVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGK 181

Query: 182 WVKKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           W+KKCDH +IY+EISDENL LMRERLMETVIWPS+D
Sbjct: 182 WIKKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

[Close]

BLAST of MS010195 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.0e-08
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A+RTVL QL E NP    W ++F    K  DG+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 165 ERVMITRLHL 175
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of MS010195 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 112 NYFTYKAVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITR 171
           +Y TY+AVRTV+ QL E +P +  W + F +     DG+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 172 LHL 175
            HL
Sbjct: 76  EHL 78

[Close]

BLAST of MS010195 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A+ TVL QL E NP    W + F    K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 165 ERVMITRLHL 175
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of MS010195 vs. ExPASy Swiss-Prot
Match: Q44177 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rbcX PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-04
Identity = 21/70 (30.00%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLA 164
           +  + +Q+Y TY+AVR +  QL E NP Q  W  +F   H   +   ++  ++ E ++L 
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELV 68

Query: 165 ERVMITRLHL 175
            R++  R +L
Sbjct: 69  LRILTVRENL 78

[Close]

BLAST of MS010195 vs. ExPASy TrEMBL
Match: A0A6J1D422 (chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017395 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.4e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS 60
           AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS
Sbjct: 3   AVGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSS 62

Query: 61  FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR 120
           FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR
Sbjct: 63  FVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVR 122

Query: 121 TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK 180
           TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK
Sbjct: 123 TVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVK 182

Query: 181 KCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KCDHAEIYKEISDENLDLMRERLMETVIWPSED
Sbjct: 183 KCDHAEIYKEISDENLDLMRERLMETVIWPSED 215

[Close]

BLAST of MS010195 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 177/214 (82.71%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 2   VGASFVVGAPVLDSPALC--LDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DSP  C   DS P+T+MSLRSGGDLVL+RKSK K+  +    ++DLRS
Sbjct: 2   VGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKS-YSTVSKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG    RSRRNQRRNRRLVI NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNFGDEWQLSAGGC-RRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92
Identity = 176/214 (82.24%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 2   VGASFVVGAPVLDS--PALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DS  P L  DS P+T+MSLRSGGDLVL+RKSKAK+ L +   ++DLRS
Sbjct: 2   VGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTV-SKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG  G +S+RNQRRNRRLV+ NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNLGDEWQLSAGG-GRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYK ISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 176/214 (82.24%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 2   VGASFVVGAPVLDSPALC--LDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRS 61
           VGA FVVGAPV+DSP  C   DS P+T+MSLRSGGDLVL+RKSK K+  +    ++DLRS
Sbjct: 2   VGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKS-YSTVSKSVDLRS 61

Query: 62  SFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAV 121
           SFVN G EW+LSAG    +SRRNQRRNRRLVI NEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 62  SFVNFGDEWQLSAGGC-RQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 121

Query: 122 RTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWV 181
           +TVLNQLYEMNPTQYRWFY+FV NHKPG+GKRFIRTLVKEKQDLAERVMITRLHLY KWV
Sbjct: 122 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 181

Query: 182 KKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           KKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of MS010195 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 177/215 (82.33%), Postives = 190/215 (88.37%), Query Frame = 0


Query: 2   VGASFVVGAPVLDS---PALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLR 61
           VGA  V GAPV+DS   P LCLDS P+T+MSLRS GDLVL R+SKAK+ LA+    +DLR
Sbjct: 2   VGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAV-SRLVDLR 61

Query: 62  SSFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKA 121
           SSFVNSG EW+LSA   GHR RRNQRRNRRLV+ NEFAGQYE+SFDDVKMQI NYFTYKA
Sbjct: 62  SSFVNSGSEWQLSASG-GHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKA 121

Query: 122 VRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKW 181
           V+TVLNQLYEMNPTQYRWFYDFV NHKP DGKRFIRTLVKEKQDLAERVMITRLHLY KW
Sbjct: 122 VKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKW 181

Query: 182 VKKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           VKKCDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 182 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of MS010195 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-58
Identity = 127/216 (58.80%), Postives = 155/216 (71.76%), Query Frame = 0


Query: 2   VGASFVVGAPVLD---SPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLR 61
           V A FVVG+PV+D   SP LCLD+   T+ ++R       R+K   K R       L+L 
Sbjct: 2   VSAWFVVGSPVMDSSSSPCLCLDAH--TTGTIR-------RKKILGKAR------NLELG 61

Query: 62  SSFVNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANE-FAGQYEDSFDDVKMQIQNYFTYK 121
           SSF  S   +RLS   V   SR   R++++L+I NE  AG Y+D+F DV+ QI NYFTYK
Sbjct: 62  SSFTGSRIVFRLSPKRV---SRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYK 121

Query: 122 AVRTVLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGK 181
           AVRTVL+QLYEMNP QY WFY+ +  ++P DGKRF+R L KE Q+LAERVMITRLHLYGK
Sbjct: 122 AVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGK 181

Query: 182 WVKKCDHAEIYKEISDENLDLMRERLMETVIWPSED 214
           W+KKCDH +IY+EISDENL LMRERLMETVIWPS+D
Sbjct: 182 WIKKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of MS010195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148835.1	2.9e-116	100.00	chaperonin-like RbcX protein 2, chloroplastic [Momordica charantia]	[more]
XP_023512052.1	1.3e-92	82.79	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAA0041415.1	3.8e-92	82.71	RcbX domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_004142113.1	8.5e-92	82.24	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypo...	[more]
XP_008449714.1	1.1e-91	82.24	PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX ...	[more]

BLAST of MS010195 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	1.9e-57	58.80	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	8.0e-08	44.29	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
Q8DIS6	1.8e-07	39.68	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
O86418	1.1e-06	40.00	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q44177	4.1e-04	30.00	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6...	[more]

BLAST of MS010195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D422	1.4e-116	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7TJ10	1.9e-92	82.71	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KX19	4.1e-92	82.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A5D3BAI6	5.4e-92	82.24	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1FUS7	5.4e-92	82.33	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of MS010195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.3e-58	58.80	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 92..213 e-value: 1.0E-47 score: 163.1
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 98..212
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 108..206 e-value: 1.7E-20 score: 73.3
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 2..213
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 2..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010195.1	MS010195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone