MS009804 (gene) Bitter gourd (TR) v1

Overview
NameMS009804
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDDE Tnp4 domain-containing protein
Locationscaffold173: 416905 .. 417143 (+)
RNA-Seq ExpressionMS009804
SyntenyMS009804
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATACGAACCTTTTATAAGTTATATACTCTCCTTAGGATTGAGAATGTGACCATAGAAGAAATGGTTGCAATATTTTTGCATCTTTTAGCACACCATGTTAAAAATAGAGTTATAAGTTTCACTTTAAGAGATCTGGACGAACCATTAGTAGATACTTCCATAAATGTCTAAAAGCTATTATTCGATGCCAAAAATATTTTTGGAAGACGCCTGAGCCAATTTTGAAACACTCT

mRNA sequence

ATGGATATACGAACCTTTTATAAGTTATATACTCTCCTTAGGATTGAGAATGTGACCATAGAAGAAATGGTTGCAATATTTTTGCATCTTTTAGCACACCATGTTAAAAATAGAGTTATAAGTCACTTTAAGAGATCTGGACGAACCATTAGTAGATACTTCCATAAATGTCTAAAAGCTATTATTCGATGCCAAAAATATTTTTGGAAGACGCCTGAGCCAATTTTGAAACACTCT

Coding sequence (CDS)

ATGGATATACGAACCTTTTATAAGTTATATACTCTCCTTAGGATTGAGAATGTGACCATAGAAGAAATGGTTGCAATATTTTTGCATCTTTTAGCACACCATGTTAAAAATAGAGTTATAAGTCACTTTAAGAGATCTGGACGAACCATTAGTAGATACTTCCATAAATGTCTAAAAGCTATTATTCGATGCCAAAAATATTTTTGGAAGACGCCTGAGCCAATTTTGAAACACTCT

Protein sequence

MDIRTFYKLYTLLRIENVTIEEMVAIFLHLLAHHVKNRVISHFKRSGRTISRYFHKCLKAIIRCQKYFWKTPEPILKHS
Homology
BLAST of MS009804 vs. NCBI nr
Match: XP_021808928.1 (protein ALP1-like [Prunus avium])

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1  MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVISH-FKRSGRTISR 60
          MD ++F+KL  +L          NV++EEM+A+FLH+LAHH+KNR I + F RSGRTIS+
Sbjct: 1  MDRQSFHKLCQILVTRGQLRLTRNVSVEEMIAMFLHILAHHIKNRTIKYNFSRSGRTISK 60

Query: 61 YFHKCLKAIIRCQKYFWKTPEPILKHS 80
          YFH+CLKA+IRCQK FWKTPEPIL++S
Sbjct: 61 YFHECLKAMIRCQKDFWKTPEPILENS 87

BLAST of MS009804 vs. NCBI nr
Match: TQD80013.1 (hypothetical protein C1H46_034426 [Malus baccata])

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-18
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0

Query: 1   MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD R+F++L  +L          NV+IEEMVA FL+++AHH+KNR I+ HF+RSGRTIS+
Sbjct: 81  MDRRSFHRLCQVLVTRGQLRATRNVSIEEMVAFFLYIIAHHLKNRTINHHFRRSGRTISK 140

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+C+KA+IRCQK FW+ PEPI ++S
Sbjct: 141 YFHECIKAMIRCQKDFWQAPEPIPENS 167

BLAST of MS009804 vs. NCBI nr
Match: XP_011464621.1 (PREDICTED: uncharacterized protein LOC105351565 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 0

Query: 1   MDIRTFYKLYTLLRIE-------NVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD  +F+KL  +L  +       NV+IEEMVA+FL+ LAHH KNRVI  +F RSGRT+S+
Sbjct: 82  MDRESFHKLCRILSTKGQLRGTRNVSIEEMVAMFLNTLAHHHKNRVIKFNFHRSGRTVSK 141

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+CLKAIIRCQK FWKTPEPI + S
Sbjct: 142 YFHECLKAIIRCQKDFWKTPEPIPEDS 168

BLAST of MS009804 vs. NCBI nr
Match: XP_024156096.1 (protein ALP1-like [Rosa chinensis])

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-18
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 0

Query: 1   MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD ++F+KL  +L          NV+IEEMVA+FL++LAHH KNR I+ +F RSGRT+S+
Sbjct: 79  MDRQSFHKLCQILINKGQLRSTRNVSIEEMVAMFLNILAHHKKNRSIALYFTRSGRTVSK 138

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+CLKA+IRC+K FWKTPEP+L+ S
Sbjct: 139 YFHECLKAMIRCRKDFWKTPEPVLEDS 165

BLAST of MS009804 vs. NCBI nr
Match: VVA31425.1 (PREDICTED: ALP1 [Prunus dulcis])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1  MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVISH-FKRSGRTISR 60
          MD ++F+KL  +L          NV++EEM+A+FLH+LAHH+KNR I + F RSGRTIS+
Sbjct: 1  MDRQSFHKLCQILVTRGQLRPTRNVSVEEMIAMFLHILAHHIKNRTIKYNFSRSGRTISK 60

Query: 61 YFHKCLKAIIRCQKYFWKTPEPILKHS 80
          YFH+ LKA+IRCQK FWKT EPIL++S
Sbjct: 61 YFHEYLKAMIRCQKDFWKTLEPILENS 87

BLAST of MS009804 vs. ExPASy TrEMBL
Match: A0A6P5S572 (protein ALP1-like OS=Prunus avium OX=42229 GN=LOC110752554 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1  MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVISH-FKRSGRTISR 60
          MD ++F+KL  +L          NV++EEM+A+FLH+LAHH+KNR I + F RSGRTIS+
Sbjct: 1  MDRQSFHKLCQILVTRGQLRLTRNVSVEEMIAMFLHILAHHIKNRTIKYNFSRSGRTISK 60

Query: 61 YFHKCLKAIIRCQKYFWKTPEPILKHS 80
          YFH+CLKA+IRCQK FWKTPEPIL++S
Sbjct: 61 YFHECLKAMIRCQKDFWKTPEPILENS 87

BLAST of MS009804 vs. ExPASy TrEMBL
Match: A0A540L0K6 (DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_034426 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0

Query: 1   MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD R+F++L  +L          NV+IEEMVA FL+++AHH+KNR I+ HF+RSGRTIS+
Sbjct: 81  MDRRSFHRLCQVLVTRGQLRATRNVSIEEMVAFFLYIIAHHLKNRTINHHFRRSGRTISK 140

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+C+KA+IRCQK FW+ PEPI ++S
Sbjct: 141 YFHECIKAMIRCQKDFWQAPEPIPENS 167

BLAST of MS009804 vs. ExPASy TrEMBL
Match: A0A5E4FV61 (PREDICTED: ALP1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B023826 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-18
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1  MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVISH-FKRSGRTISR 60
          MD ++F+KL  +L          NV++EEM+A+FLH+LAHH+KNR I + F RSGRTIS+
Sbjct: 1  MDRQSFHKLCQILVTRGQLRPTRNVSVEEMIAMFLHILAHHIKNRTIKYNFSRSGRTISK 60

Query: 61 YFHKCLKAIIRCQKYFWKTPEPILKHS 80
          YFH+ LKA+IRCQK FWKT EPIL++S
Sbjct: 61 YFHEYLKAMIRCQKDFWKTLEPILENS 87

BLAST of MS009804 vs. ExPASy TrEMBL
Match: A0A4Y1RBD7 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_011498 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1   MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD ++F+KL  +L          N++ EEMVAIFL++LAHH KNRVI  +F RSGRT+S+
Sbjct: 88  MDRQSFHKLCQILVTKGELRSTRNMSTEEMVAIFLNILAHHHKNRVIKFNFTRSGRTVSK 147

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+CLKA+IRCQK FWK+PEP+ ++S
Sbjct: 148 YFHECLKAMIRCQKDFWKSPEPVPENS 174

BLAST of MS009804 vs. ExPASy TrEMBL
Match: A0A4Y1QKY9 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_000221 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1   MDIRTFYKLYTLL-------RIENVTIEEMVAIFLHLLAHHVKNRVIS-HFKRSGRTISR 60
           MD ++F+KL  +L          N++ EEMVAIFL++LAHH KNRVI  +F RSGRT+S+
Sbjct: 88  MDRQSFHKLCQILVTKGELRSTRNMSTEEMVAIFLNILAHHHKNRVIKFNFTRSGRTVSK 147

Query: 61  YFHKCLKAIIRCQKYFWKTPEPILKHS 80
           YFH+CLKA+IRCQK FWK+PEP+ ++S
Sbjct: 148 YFHECLKAMIRCQKDFWKSPEPVPENS 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021808928.14.2e-2060.92protein ALP1-like [Prunus avium][more]
TQD80013.14.0e-1857.47hypothetical protein C1H46_034426 [Malus baccata][more]
XP_011464621.15.2e-1862.07PREDICTED: uncharacterized protein LOC105351565 [Fragaria vesca subsp. vesca][more]
XP_024156096.16.7e-1858.62protein ALP1-like [Rosa chinensis][more]
VVA31425.11.2e-1758.62PREDICTED: ALP1 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5S5722.0e-2060.92protein ALP1-like OS=Prunus avium OX=42229 GN=LOC110752554 PE=3 SV=1[more]
A0A540L0K61.9e-1857.47DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_034426 PE... [more]
A0A5E4FV615.6e-1858.62PREDICTED: ALP1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B023826 PE=3 SV=1[more]
A0A4Y1RBD72.1e-1757.47Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_011498 PE=3 SV=1[more]
A0A4Y1QKY92.1e-1757.47Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_000221 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF218DUAL SPECIFICITY PHOSPHATASE DOMAIN PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009804.1MS009804.1mRNA