MS009714 (gene) Bitter gourd (TR) v1

Overview


Name	MS009714
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L9
Location	scaffold411: 93594 .. 95374 (-)
RNA-Seq Expression	MS009714
Synteny	MS009714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTAAATGCCAAGATCATCGAGGTTGAAGGTCCTCGCGGTAAGCTCGTTCGAAATTTTAAGCACCTTAATCTCGACTTTCAACTCATTACTGACGAGTCCACCGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGGTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAATCTCATTACTGGTGTGACCAAGGGTTACCGTTACAAGATGCGTTTCGTGTATGCTCACTTTCCCATCAATGCTAGCATCACAAACGCCAACAGGTCCATTGAGATCCGTAACTTCCTTGGAGAAAAAAAGGTACTATTAACTCTATGGTTGCGTTTTTCTTTAATTTTTGTTCGGCAGGTGTTTGGTTTGGCCATTAATTTTGTGTGTTTCCATCTTGTTTCTTAATTATGAAAGGCCCAGATGGTGTTTTTCTTTGAAATATATGTTCTAAGCAACTTCAGTTTATTAAGAAGAAGCCTTCCTTTAGTTATGCTGGTTTTCTCGATCATTCCAGATTTTCATTTACATTATTTCCATGGATGTTTTTACTGCCTGACTTGTGCTGTTAATTGCTTGCAAACTATCATCGGTGAATTTGGAGACGGCATCTCTTATTCGTCGGAATCTACTCGGCGTTTTTATTTTACGTGTAGAAATATACCTTCTATGTTCTCTGGCCTTCACCCATTCTTATTAAGTAGTTGGAACTTTGTCTTGATCAATGTTTGTTATTGCTTGATTTATATTGTTAATTTCTTCATGCTTCCAATTATGAAGAACCATTTTTACAAATAGGTACTCCACCGTTACCTGATTTATTCTTGATATACGTATAAGGACCTATTGAGCAACTACTTAGAAGTATATTGTGTGCAACACTTCCTACCTCGTTTTCAATTCTGTTAGTAATTCATATTTAGTACCAACTCCCAATATTTAAAGAAACCTTGGCCACGCCACAAATCTACATTTGCAAAATATATATTGAAAACAATCAAATCGGAAACCGAGTTGGACTAGAATAAAGGGCCTTTTGATTCTCAAAATTAATCTCATTTTTTTTATGGATCCTGTATAGTTCATGTGGTGCTCTTTACAGCTAGGTTTTGTATGTTTGAGATAGGTAGGATGATTGCTTCAATTGTTTCATTCTTTCTCTTATTGCAAAGTATTACCGGAAAGCTCATTTCTTACAGAAAAGGTATAGGAGCAATCATACTTTCATTAATTCGTTAATATCACGGCTTTCTGGATGTTGTCCTCCTTGCATAAAAATTTTCAAAGTTGCTTGTGCAAGGATATGGCATCGACCAAATAACTAGCTATTGAAATTTTCTATTGCCAATTAACCATATATTTTTTTTGATGAACCATGCACGTAATTATTTCATCAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATCACCCGATCTGAGAAAGTGAAGGATGAGTTGGTTTTGGATGGAAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTCATAAACCAGGTTTGTCTCTATCACACTTTCCACATGCTGGCTTTTGCTGCACAGAAAAGAATCGAGTAAATAGTTCATTGTTAAAACATTTTGTGGCCTTTTCTTCCCTGCCTTCTTTTGCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGGCCATTGTTGGAGACGAG

mRNA sequence

ATGAAGACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTAAATGCCAAGATCATCGAGGTTGAAGGTCCTCGCGGTAAGCTCGTTCGAAATTTTAAGCACCTTAATCTCGACTTTCAACTCATTACTGACGAGTCCACCGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGGTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAATCTCATTACTGGTGTGACCAAGGGTTACCGTTACAAGATGCGTTTCGTGTATGCTCACTTTCCCATCAATGCTAGCATCACAAACGCCAACAGGTCCATTGAGATCCGTAACTTCCTTGGAGAAAAAAAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATCACCCGATCTGAGAAAGTGAAGGATGAGTTGGTTTTGGATGGAAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTCATAAACCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGGCCATTGTTGGAGACGAG

Coding sequence (CDS)

ATGAAGACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTAAATGCCAAGATCATCGAGGTTGAAGGTCCTCGCGGTAAGCTCGTTCGAAATTTTAAGCACCTTAATCTCGACTTTCAACTCATTACTGACGAGTCCACCGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGGTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAATCTCATTACTGGTGTGACCAAGGGTTACCGTTACAAGATGCGTTTCGTGTATGCTCACTTTCCCATCAATGCTAGCATCACAAACGCCAACAGGTCCATTGAGATCCGTAACTTCCTTGGAGAAAAAAAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATCACCCGATCTGAGAAAGTGAAGGATGAGTTGGTTTTGGATGGAAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTCATAAACCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGGCCATTGTTGGAGACGAG

Protein sequence

MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRIEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNFLGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGAIVGDE

Homology

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BLAST of MS009714 vs. NCBI nr
Match: XP_022141186.1 (60S ribosomal protein L9 [Momordica charantia])

HSP 1 Score: 382.5 bits (981), Expect = 2.2e-102
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKGAIVGDE
Sbjct: 181 GIYVSEKGAIVGDE 194

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BLAST of MS009714 vs. NCBI nr
Match: XP_022922852.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal protein L9 [Cucurbita maxima] >XP_023553154.1 60S ribosomal protein L9 [Cucurbita pepo subsp. pepo] >KAG6576613.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.0 bits (959), Expect = 7.8e-100
Identity = 188/194 (96.91%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

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BLAST of MS009714 vs. NCBI nr
Match: XP_022968434.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 8.6e-99
Identity = 186/194 (95.88%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

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BLAST of MS009714 vs. NCBI nr
Match: XP_022945825.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6574272.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013341.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN ++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

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BLAST of MS009714 vs. NCBI nr
Match: XP_008462900.1 (PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >KAA0056651.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa] >TYK04612.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 185/192 (96.35%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN ++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVG 193
           GIYVSEKG IVG
Sbjct: 181 GIYVSEKGTIVG 192

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BLAST of MS009714 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.9e-93
Identity = 174/194 (89.69%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETM+IPDGV IKVNAK+IEVEGPRGKLVR+FKHLNLDF LITDE+ GKKKL+I
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDEN-GKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           +AWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN N+SIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKGA+V +E
Sbjct: 181 GIYVSEKGAVVVEE 193

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BLAST of MS009714 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 328.9 bits (842), Expect = 3.8e-89
Identity = 163/194 (84.02%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    +SIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEK  IV +E
Sbjct: 181 GIYVSEKSKIVEEE 194

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BLAST of MS009714 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.9e-88
Identity = 160/194 (82.47%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   N+SIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG I  +E
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of MS009714 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 313.9 bits (803), Expect = 1.2e-84
Identity = 155/193 (80.31%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTIL+SETM+IP+GV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           +AWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN+N +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+I RSEKVKDELVLDGNDIELVSRS ALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGD 194
           GIYVS+KG I  D
Sbjct: 181 GIYVSDKGTITED 189

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BLAST of MS009714 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-57
Identity = 113/194 (58.25%), Postives = 141/194 (72.68%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILS++T+DIPD V + +  + + V+GPRG L R F H+NL+ +L+  +   +KKLR+
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKK---QKKLRV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           + W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS S ALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG +V  E
Sbjct: 181 GIYVSEKGTVVEPE 191

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BLAST of MS009714 vs. ExPASy TrEMBL
Match: A0A6J1CIC7 (60S ribosomal protein L9 OS=Momordica charantia OX=3673 GN=LOC111011642 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKGAIVGDE
Sbjct: 181 GIYVSEKGAIVGDE 194

[Close]

BLAST of MS009714 vs. ExPASy TrEMBL
Match: A0A6J1J3I2 (60S ribosomal protein L9 OS=Cucurbita maxima OX=3661 GN=LOC111483062 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 188/194 (96.91%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of MS009714 vs. ExPASy TrEMBL
Match: A0A6J1E4H2 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111430709 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 188/194 (96.91%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of MS009714 vs. ExPASy TrEMBL
Match: A0A6J1HZM6 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.2e-99
Identity = 186/194 (95.88%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of MS009714 vs. ExPASy TrEMBL
Match: A0A6J1G231 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDE+TGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN ++SIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG IVG+E
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of MS009714 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-90
Identity = 163/194 (84.02%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    +SIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEK  IV +E
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of MS009714 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-90
Identity = 163/194 (84.02%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    +SIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEK  IV +E
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of MS009714 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-89
Identity = 160/194 (82.47%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDESTGKKKLRI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANRSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   N+SIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGAIVGDE 195
           GIYVSEKG I  +E
Sbjct: 181 GIYVSEKGKIAVEE 194

The following BLAST results are available for this feature:

BLAST of MS009714 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141186.1	2.2e-102	100.00	60S ribosomal protein L9 [Momordica charantia]	[more]
XP_022922852.1	7.8e-100	96.91	60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal...	[more]
XP_022968434.1	8.6e-99	95.88	60S ribosomal protein L9-like [Cucurbita maxima]	[more]
XP_022945825.1	1.1e-98	95.88	60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal...	[more]
XP_008462900.1	7.3e-98	96.35	PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTE...	[more]

BLAST of MS009714 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	1.9e-93	89.69	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	3.8e-89	84.02	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	1.9e-88	82.47	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	1.2e-84	80.31	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	2.9e-57	58.25	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of MS009714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIC7	1.1e-102	100.00	60S ribosomal protein L9 OS=Momordica charantia OX=3673 GN=LOC111011642 PE=3 SV=...	[more]
A0A6J1J3I2	3.8e-100	96.91	60S ribosomal protein L9 OS=Cucurbita maxima OX=3661 GN=LOC111483062 PE=3 SV=1	[more]
A0A6J1E4H2	3.8e-100	96.91	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111430709 PE=3...	[more]
A0A6J1HZM6	4.2e-99	95.88	60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 S...	[more]
A0A6J1G231	5.4e-99	95.88	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3...	[more]

BLAST of MS009714 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	2.7e-90	84.02	Ribosomal protein L6 family	[more]
AT1G33140.1	2.7e-90	84.02	Ribosomal protein L6 family	[more]
AT4G10450.1	1.3e-89	82.47	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 102..181 e-value: 2.1E-12 score: 47.5 coord: 12..90 e-value: 9.7E-12 score: 45.4
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..194 e-value: 1.9E-51 score: 174.4
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 8.7E-30 score: 105.0
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 1.8E-30 score: 103.7
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..193
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..193
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009714.1	MS009714.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome