MS007852 (gene) Bitter gourd (TR) v1

Overview
NameMS007852
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold13: 1801750 .. 1801892 (-)
RNA-Seq ExpressionMS007852
SyntenyMS007852
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAGAAAAGGAGATGCAAGAATTGTCATTATCTCCGATCTTTCTTTTCGTTGTTCGGCGGTCTCATTCTCTGCCTCTACTTCCTCTCTCAATCAGAATTCAGAGATTGGTATTTGATTGTCGAGATCATTTTAGTT

mRNA sequence

ATGGAAGAAAGAAAAGGAGATGCAAGAATTGTCATTATCTCCGATCTTTCTTTTCGTTGTGGCGGTCTCATTCTCTGCCTCTACTTCCTCTCTCAATCAGAATTCAGAGATTGGTATTTGATTGTCGAGATCATTTTAGTT

Coding sequence (CDS)

ATGGAAGAAAGAAAAGGAGATGCAAGAATTGTCATTATCTCCGATCTTTCTTTTCGTTGTGGCGGTCTCATTCTCTGCCTCTACTTCCTCTCTCAATCAGAATTCAGAGATTGGTATTTGATTGTCGAGATCATTTTAGTT

Protein sequence

MEERKGDARIVIISDLSFRCGGLILCLYFLSQSEFRDWYLIVEIILV
Homology
BLAST of MS007852 vs. NCBI nr
Match: KAG7026101.1 (hypothetical protein SDJN02_12600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARI+IIS L F C   GG +LCLY F+ +SE +DWY +V IILV
Sbjct: 1  MEERKGDARILIISGLMFLCVVAGGFLLCLYLFVPESESQDWYSVVGIILV 51

BLAST of MS007852 vs. NCBI nr
Match: XP_023000624.1 (uncharacterized protein LOC111494867 [Cucurbita maxima])

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDA I+IIS L F C   GGL+LCLY F+ +SE +DWY +V IILV
Sbjct: 1  MEERKGDATILIISGLMFLCVVAGGLLLCLYLFVPESESQDWYSVVGIILV 51

BLAST of MS007852 vs. NCBI nr
Match: XP_038875814.1 (uncharacterized protein LOC120068181 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARI IIS L F C   GG++LCLY FL +S+  DWY IV I+LV
Sbjct: 1  MEERKGDARIFIISGLIFLCIISGGILLCLYLFLPESQTPDWYPIVGIVLV 51

BLAST of MS007852 vs. NCBI nr
Match: XP_004138999.1 (uncharacterized protein LOC101203715 [Cucumis sativus] >KAE8651759.1 hypothetical protein Csa_006785 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARIVIIS L F C   GG +LCLY FL +S+  DWY  + I+LV
Sbjct: 15 MEERKGDARIVIISGLIFLCIILGGFLLCLYLFLPESQTSDWYPTIGIVLV 65

BLAST of MS007852 vs. NCBI nr
Match: XP_022155761.1 (uncharacterized protein LOC111022806 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 8.7e-05
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARI+IIS + F C   GGL+L LY +L QSE  DWY IV I+LV
Sbjct: 5  MEERKGDARILIISGVIFLCIISGGLLLGLYLYLPQSESTDWYPIVGIVLV 55

BLAST of MS007852 vs. ExPASy TrEMBL
Match: A0A6J1KKI3 (uncharacterized protein LOC111494867 OS=Cucurbita maxima OX=3661 GN=LOC111494867 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDA I+IIS L F C   GGL+LCLY F+ +SE +DWY +V IILV
Sbjct: 1  MEERKGDATILIISGLMFLCVVAGGLLLCLYLFVPESESQDWYSVVGIILV 51

BLAST of MS007852 vs. ExPASy TrEMBL
Match: A0A0A0LN77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G120380 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARIVIIS L F C   GG +LCLY FL +S+  DWY  + I+LV
Sbjct: 1  MEERKGDARIVIISGLIFLCIILGGFLLCLYLFLPESQTSDWYPTIGIVLV 51

BLAST of MS007852 vs. ExPASy TrEMBL
Match: A0A6J1DSP4 (uncharacterized protein LOC111022806 OS=Momordica charantia OX=3673 GN=LOC111022806 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARI+IIS + F C   GGL+L LY +L QSE  DWY IV I+LV
Sbjct: 5  MEERKGDARILIISGVIFLCIISGGLLLGLYLYLPQSESTDWYPIVGIVLV 55

BLAST of MS007852 vs. ExPASy TrEMBL
Match: A0A6A1W806 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G013118 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1  MEERKGDARIVIISDLSFRC---GGLILCLY-FLSQSEFRDWYLIVEIILV 48
          MEERKGDARI IIS L F C   GG++LCLY FL Q++   WY +  IILV
Sbjct: 1  MEERKGDARIYIISFLFFACIVTGGVLLCLYVFLPQTQSASWYPVAGIILV 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026101.13.5e-0664.71hypothetical protein SDJN02_12600, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023000624.16.0e-0664.71uncharacterized protein LOC111494867 [Cucurbita maxima][more]
XP_038875814.11.3e-0564.71uncharacterized protein LOC120068181 [Benincasa hispida][more]
XP_004138999.12.3e-0562.75uncharacterized protein LOC101203715 [Cucumis sativus] >KAE8651759.1 hypothetica... [more]
XP_022155761.18.7e-0564.71uncharacterized protein LOC111022806 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KKI32.9e-0664.71uncharacterized protein LOC111494867 OS=Cucurbita maxima OX=3661 GN=LOC111494867... [more]
A0A0A0LN771.1e-0562.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G120380 PE=4 SV=1[more]
A0A6J1DSP44.2e-0564.71uncharacterized protein LOC111022806 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6A1W8061.2e-0460.78Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G013118 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007852.1MS007852.1mRNA