MS006855 (gene) Bitter gourd (TR) v1

Overview
NameMS006855
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At2g13600-like
Locationscaffold871: 16416 .. 16520 (-)
RNA-Seq ExpressionMS006855
SyntenyMS006855
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAATTGACGAAGTATGCTCTCTGCTATGCTCTTAATTCTTGTGCTAAGACTTTGAATTTGTTTAATGGTCTGCAAATTCACGCCCAGATTGTTAAAATTGGA

mRNA sequence

GCAAAATTGACGAAGTATGCTCTCTGCTATGCTCTTAATTCTTGTGCTAAGACTTTGAATTTGTTTAATGGTCTGCAAATTCACGCCCAGATTGTTAAAATTGGA

Coding sequence (CDS)

GCAAAATTGACGAAGTATGCTCTCTGCTATGCTCTTAATTCTTGTGCTAAGACTTTGAATTTGTTTAATGGTCTGCAAATTCACGCCCAGATTGTTAAAATTGGA

Protein sequence

AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG
Homology
BLAST of MS006855 vs. NCBI nr
Match: XP_022159320.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia] >XP_022159321.1 pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKYALC ALNSCAKTLNLFNGLQIHAQIVKIG
Sbjct: 6  AKLTKYALCSALNSCAKTLNLFNGLQIHAQIVKIG 40

BLAST of MS006855 vs. NCBI nr
Match: XP_022998877.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT+NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. NCBI nr
Match: XP_023521522.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo] >XP_023523312.1 pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT+NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. NCBI nr
Match: XP_022948515.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT+NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. NCBI nr
Match: XP_038896055.1 (pentatricopeptide repeat-containing protein At3g12770-like [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTHNLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. ExPASy TrEMBL
Match: A0A6J1DYD1 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111025730 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKYALC ALNSCAKTLNLFNGLQIHAQIVKIG
Sbjct: 6  AKLTKYALCSALNSCAKTLNLFNGLQIHAQIVKIG 40

BLAST of MS006855 vs. ExPASy TrEMBL
Match: A0A6J1K975 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita maxima OX=3661 GN=LOC111493402 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.7e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT+NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. ExPASy TrEMBL
Match: A0A6J1GA23 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita moschata OX=3662 GN=LOC111452173 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.7e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLTKY+LC ALNSCAKT+NLF GLQIHAQIVKIG
Sbjct: 6  AKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. ExPASy TrEMBL
Match: A0A5A7UEE6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00490 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLT Y+LC AL+SCAKT NLF GLQIHAQIVKIG
Sbjct: 6  AKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIG 40

BLAST of MS006855 vs. ExPASy TrEMBL
Match: A0A1S3CML0 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103502628 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  AKLTKYALCYALNSCAKTLNLFNGLQIHAQIVKIG 36
          AKLT Y+LC AL+SCAKT NLF GLQIHAQIVKIG
Sbjct: 6  AKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIG 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159320.13.3e-0997.14pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]... [more]
XP_022998877.11.4e-0788.57pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita maxima][more]
XP_023521522.11.4e-0788.57pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp... [more]
XP_022948515.11.4e-0788.57pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita moschata][more]
XP_038896055.15.3e-0788.57pentatricopeptide repeat-containing protein At3g12770-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DYD11.6e-0997.14pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti... [more]
A0A6J1K9756.7e-0888.57pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita maxima O... [more]
A0A6J1GA236.7e-0888.57pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita moschata... [more]
A0A5A7UEE64.8e-0682.86Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CML04.8e-0682.86pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006855.1MS006855.1mRNA