MS006829 (gene) Bitter gourd (TR) v1

Overview


Name	MS006829
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold60: 945638 .. 945895 (+)
RNA-Seq Expression	MS006829
Synteny	MS006829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAATTCTATTGCTTGGCTTCGCAATTGGGCTGTTGCTTCTGATTAGCTCCTCTTTGTTTCCTTCAGCTGATGCAATAAGGCGACCAGCAGCCATGGAAGCTCAGAAGGTGGAAGAAAAATGGCAGCCTAGTAATAGTGAAGATGGGAAGGGCCATATTGGTCATTTCCCAGATGAGAGCAGTCCAAAGAACCACCATTTCATCCCAAGAGAAGCTTTCAACAACTATGGAGGCAGTGATAATGGTGGAGGC

mRNA sequence

ATGAGAAGAATTCTATTGCTTGGCTTCGCAATTGGGCTGTTGCTTCTGATTAGCTCCTCTTTGTTTCCTTCAGCTGATGCAATAAGGCGACCAGCAGCCATGGAAGCTCAGAAGGTGGAAGAAAAATGGCAGCCTAGTAATAGTGAAGATGGGAAGGGCCATATTGGTCATTTCCCAGATGAGAGCAGTCCAAAGAACCACCATTTCATCCCAAGAGAAGCTTTCAACAACTATGGAGGCAGTGATAATGGTGGAGGC

Coding sequence (CDS)

ATGAGAAGAATTCTATTGCTTGGCTTCGCAATTGGGCTGTTGCTTCTGATTAGCTCCTCTTTGTTTCCTTCAGCTGATGCAATAAGGCGACCAGCAGCCATGGAAGCTCAGAAGGTGGAAGAAAAATGGCAGCCTAGTAATAGTGAAGATGGGAAGGGCCATATTGGTCATTTCCCAGATGAGAGCAGTCCAAAGAACCACCATTTCATCCCAAGAGAAGCTTTCAACAACTATGGAGGCAGTGATAATGGTGGAGGC

Protein sequence

MRRILLLGFAIGLLLLISSSLFPSADAIRRPAAMEAQKVEEKWQPSNSEDGKGHIGHFPDESSPKNHHFIPREAFNNYGGSDNGGG

Homology

[Close]

BLAST of MS006829 vs. NCBI nr
Match: KAG6607149.1 (hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 2  RRILLLGFAIGLLLLISSSLFPSADAIRRPAAMEAQKVEEKWQPSNSEDGK-GHIGHFPD 61
          R +L++GFAIG+LL++SSS  P+ADA            + KW+   +EDGK GH+G +PD
Sbjct: 3  RNVLVIGFAIGVLLVLSSSCLPAADA-----------KQLKWR--LNEDGKAGHVGRYPD 62

Query: 62 ESSPKNHHFIPREAFNNYGGSDNGGG 87
          +S  KNHHFIPR+AFNNY     G G
Sbjct: 63 QSGRKNHHFIPRDAFNNYAKRQAGTG 75

[Close]

BLAST of MS006829 vs. TAIR 10
Match: AT3G45160.1 (Putative membrane lipoprotein )

HSP 1 Score: 43.9 bits (102), Expect = 7.6e-05
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 11 IGLLLLISSSLFPSADAIRRPAAMEAQKVEEKWQPSNSEDGKGHIGHFPDESSPKNHHFI 70
          I ++++I SS   + + I R    E++KV  +      ED    I H    SS +NHH+I
Sbjct: 12 IMVMMVIISSCLAARNIIPRETNQESEKVSREMIIGKEEDSTEKIEH--PRSSVENHHYI 71

Query: 71 PREAFNNY--GGSDNGGG 87
          PR+ F NY  GG +NGGG
Sbjct: 72 PRQDFYNYGPGGENNGGG 87

The following BLAST results are available for this feature:

BLAST of MS006829 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607149.1	9.6e-10	50.00	hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS006829 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006829 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006829 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45160.1	7.6e-05	38.46	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006829.1	MS006829.1	mRNA