MS006628 (gene) Bitter gourd (TR) v1

Overview


Name	MS006628
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	scaffold482: 290568 .. 293912 (+)
RNA-Seq Expression	MS006628
Synteny	MS006628

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGCTGGGCAACTTCTAACAGCTACAAATATCAACTCCACCATTTCCATTTCCACTTCATTCAACAATAAAGCTGCGCCCAAATCTGCATTTCACACATTCAAAATCAGAGCTTCTTCAAACAAAAATGACATCTCCTTGGTAACACATTCATTCTCCTTTCCTATCTTTCACTTCACACAATTTTCTTTCCATCTCAAAACTTGGATGGATTGATCTCTCTCATTTTTTCTGGTGGCATTCAGAGAAGAAGCAGCAAACCTCCACGGCGGCGTCTGATCACGATATCGACATCGGGAAGCAGATGGCAGGGGAAGTGGTCCTGTGATTACCTGCTTTCCCTGCAAGACCTCAGCTTGGAAGACTTAGTAGAAGATGAACACAACAAAGATGCAAATGTCTTCATCAACCTCTGCATTGAGAAGGTATTTCCAACACTTTCTTTTTTCTGAAAGAAACTATTTTATAGTTTTTCGTAACAAAATTTGATGAAAATATGTCTGTTTGATTGTTTTTTGAAGTACCTCCTTTATTTTGTTGTGCTTGATGAACACAAAGATGCACGTCTTCTATATCTCTCTGAGACATTGAATCTAACTCTAATAACATCTTAGAGAGGGGAAGAGAAACTTTTTTAGAGAGAAGAATGTATTAGTGAGGGATAGAGAGACTTTTTCTAGAGTGAGGAATGTGCTAAGCGAGGGAAATAAACAATTTTCTTCACAAGGAAGAATGCAAAACAGAGAGACCCTTTTTTATGGAGGTAGAAAGAAAAGAGTGACAGATAGAACGTCTTTCACCCACATAGGTTCAATTCGTGAGTGAAATTATACCTATCACAATAGTTCAGACGTGGTAGTGGTCTGTGCAATTTGGCCTAATTAGTTTTTTCCTTCTCAAGAGTGCCAGTTCCAGTGAACTAGAAAAGAACTAATAAAGAATGGATCTAGAATCTAGTTCGCCCTCGCTATAACGACATGTTCTTTCCAATAGGGTCATTCTATCGATAATGCAGAAGCGTAAACAATCAAATACTTAGTCAAAAGAATACTTCTTTACTGAGCTTTAAACTAAGACCAAAAGCCCTCAGAGGGAGAACCATGAAAAGGTTAAACAAATCAAATATAATATTGAAAATTTTTAGGACAAAAGCTTTCAAATCTTTCATACTGATTGAAAAAGAAGGAAACCTGATTAAAATCAAAGACCCCAAAACTTTCCCCAGCAATTTGAACTAAGGATTAAAAGAAAAGAAAAACAAAAGACTTACTGCTTTTGGGGACAAAAGTATCTTTTTCTCTATGGAGAGAAATTTAGGTTTAACCGTCTCAGAAATTCTAATTTAAAACTAGGGCTTCAAAGTTCTACAAAGTAAAACCTTAATAAAGCCTCTTTAAGAGGCAGAACATCAAGCTATTAAAGAATGAATCTAGAATCTAGTTGGCCCTCGAGGATCTTTCTGGAGAATTTGATTTTAATCAAAATTGTCCCTGAAACAACACAGAATCAAAATGGATTTCGAACCCTACTTCCGGTGATCAGACACACAGCACAAGCATCTGAAGAATCCAATTCTCAGCTTGAAGATAATAGGATTTTGACCAATCATTTTTTGAAGCAGTTTTAAGAATCTAAACAGCCAAAATCATATTGATCCACTAATCCCCACACAAAATGATCTATCAGATTACTAGACTCTAGAATACTTAACCAACTTTCCTTTTGTTTACCAGCATGCAAGTTTTGGGTTCACTGTAGATGGAAAGATCGTCACATCATTCACCCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGGTAGAGCTTTGTTTGAACAAACAAATAAATGATAGCATCATAAAGCTTCTAGTTCTAAATCAAGTGGCTATTGATATTACATAGTACTAGAAGTGATCGCACGTATCTGCATGCTTCATGTTAAACACGAATCAATTGAAAAGGGTTTTTCTTTATGAGATTTTGTGATTTTCTTCCTTAATTTTATTATTTTTAAGGTTTAAATAGTTTCTACTTTTGGTTTTGGTTTGATTTAGTTTGTTTGATTCATATATTTTTAAAATATTCATTTTGATCTCTTTACTTTTAACTTTGGTTCATTCTAGTCATTACACTTTTAAAACATTCATTTTGGTTCCAGTACTTTTAAAAAGTGACCACTTTCGTGTTTTGGTTTCAGTACTTTTAAAAAGTGACCAATTTGATCTATTTGCAAAATTTTAATATAAATTTTATACACTATAGAAACCGGTTTCTAATACAAATTGATAGTTACATTTCAAGAAATTTAGTGAGTGAATTGTGATGCTAGAAGAAATGAAATAAAAATAAAAATAAAAGAGACCAAAATGTTCAATTTTTTAAAAGTACATGGATCAAGATGAAAGTTTTAAAAGTATATGGACCAAAATGAACTAAAGTTAGAAAGTACAAGGACCAAAACAGTATTTAAACCTATTTTTATTCTTGCCTATTCATAATAGAAACTAAACTCCCTTGTTCTTCCTTGTCTCCAGTAATTGGCCTTTATGATTTAGCAAGTACCCTTGTTCATAAGAAACCCTCCCAACCCATCACATCCCTGTCCAAATCCACTTCCACAACTTTGACCTATTATGCATATACAGAATTTGTCTCTAGACTAAAGAAGTATGAGCAACTTCCGCTATGACTTTATCTTCCTTATCTCTCGCCTATTCATAAGGCTTCAATTCAGCGACATTGCAACAGTAGGTTCTAACACCTATAATTGTTTTGATCTAACAGATCAATGCAAACTTTAATGTCTTGGTTCTGTCATCAAACAGAGCCAATCGAGAGATTCATCTTCCTGAAATTGGATGCGATGATCCATCAGTGAGTTTCTGAAGTTTCTTCATTTCTTTCTCCACTTCTACCACTAAGAACTATCACAACACGTTTTAACTTAACAGGTGATATACGTCAAACCCGGACTTGAAGCTGATCTAGATTCACTAGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGTGAGAAAGTTGAATGCAATAGAACTGGACTAGTAATCAATAACCATAATATCTGAATACTACATGAGTCAATTGAAAGAAGTTAACAAAACAACATACCTTTTCCAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAGTGTAAGTGGTCCACTATCATTCAAGCTCCCACACGTAACCATAAGTTGGAACTAACAGAGGAATGTTGCTTGCAGATATTGGAGCACAAAATGCTGCGTCCATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAAAAAATCTAATGTA

mRNA sequence

ATGGCAGAAGCTGGGCAACTTCTAACAGCTACAAATATCAACTCCACCATTTCCATTTCCACTTCATTCAACAATAAAGCTGCGCCCAAATCTGCATTTCACACATTCAAAATCAGAGCTTCTTCAAACAAAAATGACATCTCCTTGAGAAGAAGCAGCAAACCTCCACGGCGGCGTCTGATCACGATATCGACATCGGGAAGCAGATGGCAGGGGAAGTGGTCCTGTGATTACCTGCTTTCCCTGCAAGACCTCAGCTTGGAAGACTTAGTAGAAGATGAACACAACAAAGATGCAAATGTCTTCATCAACCTCTGCATTGAGAAGCATGCAAGTTTTGGGTTCACTGTAGATGGAAAGATCGTCACATCATTCACCCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGATCAATGCAAACTTTAATGTCTTGGTTCTGTCATCAAACAGAGCCAATCGAGAGATTCATCTTCCTGAAATTGGATGCGATGATCCATCAGTGATATACGTCAAACCCGGACTTGAAGCTGATCTAGATTCACTAGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAGTATATTGGAGCACAAAATGCTGCGTCCATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAAAAAATCTAATGTA

Coding sequence (CDS)

ATGGCAGAAGCTGGGCAACTTCTAACAGCTACAAATATCAACTCCACCATTTCCATTTCCACTTCATTCAACAATAAAGCTGCGCCCAAATCTGCATTTCACACATTCAAAATCAGAGCTTCTTCAAACAAAAATGACATCTCCTTGAGAAGAAGCAGCAAACCTCCACGGCGGCGTCTGATCACGATATCGACATCGGGAAGCAGATGGCAGGGGAAGTGGTCCTGTGATTACCTGCTTTCCCTGCAAGACCTCAGCTTGGAAGACTTAGTAGAAGATGAACACAACAAAGATGCAAATGTCTTCATCAACCTCTGCATTGAGAAGCATGCAAGTTTTGGGTTCACTGTAGATGGAAAGATCGTCACATCATTCACCCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGATCAATGCAAACTTTAATGTCTTGGTTCTGTCATCAAACAGAGCCAATCGAGAGATTCATCTTCCTGAAATTGGATGCGATGATCCATCAGTGATATACGTCAAACCCGGACTTGAAGCTGATCTAGATTCACTAGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAGTATATTGGAGCACAAAATGCTGCGTCCATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAAAAAATCTAATGTA

Protein sequence

MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRLITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGKIVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV

Homology

[Close]

BLAST of MS006628 vs. NCBI nr
Match: XP_022153177.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 467.2 bits (1201), Expect = 8.2e-128
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL
Sbjct: 1   MAEAGHLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD
Sbjct: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV 237
           LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV 236

[Close]

BLAST of MS006628 vs. NCBI nr
Match: XP_022153176.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 419.1 bits (1076), Expect = 2.6e-113
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL
Sbjct: 1   MAEAGHLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD
Sbjct: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ 212
           LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ 211

[Close]

BLAST of MS006628 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 7.0e-103
Identity = 201/235 (85.53%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG L+ A N+N   SIS+SFN  AAPK A  TFKI+ASS +NDISLRRSSKPP RRL
Sbjct: 1   MAEAGHLVAAGNVN---SISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPP-RRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITIST+GS WQGKWSCDYLLSLQD +LEDLVEDEH K+A+VFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEH-KNAHVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           I TSFTRKCCTCSSPYCREINANFNVLVLSSNRA RE  LPEIG DDPSVIYVKPGLEAD
Sbjct: 121 INTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSN 236
           LDSLVRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRWSRLLEL+KS+
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSH 230

[Close]

BLAST of MS006628 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 380.6 bits (976), Expect = 1.0e-101
Identity = 200/235 (85.11%), Postives = 210/235 (89.36%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAE G L+TA NIN   SIS+SFN  AAPK A  TFKI ASS +NDISLRRS+K   RRL
Sbjct: 1   MAETGHLVTARNIN---SISSSFNKAAAPKYATQTFKITASSKRNDISLRRSNK-TSRRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITISTSGSRWQGKW+ DYLLSL+DL+LEDLVEDEH K+A VFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTSGSRWQGKWTSDYLLSLRDLNLEDLVEDEH-KNARVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           I TSFTRKCCTCSSPYCREINANFNVLVLSSNR NREIHLP+IG DDPSVIYVKPGLEAD
Sbjct: 121 INTSFTRKCCTCSSPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSN 236
           LDS VRDTIRLTTSTKDTCSE CEKSQPTVQYIGAQN ASIDKRWSRLLEL+KSN
Sbjct: 181 LDSFVRDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNGASIDKRWSRLLELRKSN 230

[Close]

BLAST of MS006628 vs. NCBI nr
Match: XP_023527889.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527890.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 198/235 (84.26%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG L+ A N+N   SIS+SFN  AAPK A   FKI+ASS +NDISLRRSSKPP RRL
Sbjct: 1   MAEAGHLVAAGNVN---SISSSFNKAAAPKFATQAFKIKASSKRNDISLRRSSKPP-RRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITIST+GS WQGKWS DYLLSLQD +LEDLVEDEH K+A+VFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTAGSMWQGKWSYDYLLSLQDFNLEDLVEDEH-KNAHVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           I TSFTRKCCTCSSPYCREINANFNVLVLSSNRA RE  LP+IG DDPSVIYVKPGLEAD
Sbjct: 121 INTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSN 236
           LDSLVRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRWSRLLEL+KS+
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSH 230

[Close]

BLAST of MS006628 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 118/227 (51.98%), Postives = 153/227 (67.40%), Query Frame = 0


Query: 7   LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRLITISTS 66
           L++   +NS I +S   N    P S+  + K +ASS          S    +RLIT+S S
Sbjct: 6   LISPNLLNSKIKVSG--NTHHLPFSSL-SKKHQASSPIQAAINGGGSSKTVKRLITLSPS 65

Query: 67  GSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGKIVTSFT 126
             +W G W   Y +SL+DL L+DLVED    ++ V ++L +++HAS G +VDG+I+TS  
Sbjct: 66  EGKWNGNWKTQYDVSLRDLQLQDLVED-GPPNSRVSVDLSVQRHASMGLSVDGRIMTSIA 125

Query: 127 RKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEADLDSLVR 186
           RKC  CSS Y R I+ +F V +L S+R NR   LPEIG DDPSVIYV+PG EA+LDSLV+
Sbjct: 126 RKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQ 185

Query: 187 DTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKK 234
           DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRWSRLLELKK
Sbjct: 186 DTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of MS006628 vs. ExPASy TrEMBL
Match: A0A6J1DI80 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020731 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL
Sbjct: 1   MAEAGHLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD
Sbjct: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV 237
           LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSNV 236

[Close]

BLAST of MS006628 vs. ExPASy TrEMBL
Match: A0A6J1DJV3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020731 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL
Sbjct: 1   MAEAGHLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD
Sbjct: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ 212
           LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQ 211

[Close]

BLAST of MS006628 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.4e-103
Identity = 201/235 (85.53%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAEAGQLLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRL 60
           MAEAG L+ A N+N   SIS+SFN  AAPK A  TFKI+ASS +NDISLRRSSKPP RRL
Sbjct: 1   MAEAGHLVAAGNVN---SISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPP-RRL 60

Query: 61  ITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGK 120
           ITIST+GS WQGKWSCDYLLSLQD +LEDLVEDEH K+A+VFINLCIEKHASFGFTVDGK
Sbjct: 61  ITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEH-KNAHVFINLCIEKHASFGFTVDGK 120

Query: 121 IVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEAD 180
           I TSFTRKCCTCSSPYCREINANFNVLVLSSNRA RE  LPEIG DDPSVIYVKPGLEAD
Sbjct: 121 INTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEAD 180

Query: 181 LDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKSN 236
           LDSLVRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRWSRLLEL+KS+
Sbjct: 181 LDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSH 230

[Close]

BLAST of MS006628 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.4e-101
Identity = 201/235 (85.53%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MAEAGQLLTAT-NINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRR 60
           MAEAG+L+T T NIN   SIS+SF NK APKS   TFKI+ASS +NDISLRRS+K   RR
Sbjct: 1   MAEAGRLVTTTRNIN---SISSSF-NKPAPKSLTQTFKIKASSKRNDISLRRSNK-TTRR 60

Query: 61  LITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDG 120
           LITISTSGSRWQGKW+CDYLLSL+DL+LEDLVEDEH K+A+VFINLCIEKHASFGFTVDG
Sbjct: 61  LITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEH-KNAHVFINLCIEKHASFGFTVDG 120

Query: 121 KIVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEA 180
           +I TSFTRKCCTCS PYCREI ANFNVLVLSSNRANREIHLP+IG DDPSVIYVKPGLEA
Sbjct: 121 RINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEA 180

Query: 181 DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKS 235
           DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRW RLLEL+KS
Sbjct: 181 DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 229

[Close]

BLAST of MS006628 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.4e-101
Identity = 201/235 (85.53%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MAEAGQLLTAT-NINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRR 60
           MAEAG+L+T T NIN   SIS+SF NK APKS   TFKI+ASS +NDISLRRS+K   RR
Sbjct: 1   MAEAGRLVTTTRNIN---SISSSF-NKPAPKSLTQTFKIKASSKRNDISLRRSNK-TTRR 60

Query: 61  LITISTSGSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDG 120
           LITISTSGSRWQGKW+CDYLLSL+DL+LEDLVEDEH K+A+VFINLCIEKHASFGFTVDG
Sbjct: 61  LITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEH-KNAHVFINLCIEKHASFGFTVDG 120

Query: 121 KIVTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEA 180
           +I TSFTRKCCTCS PYCREI ANFNVLVLSSNRANREIHLP+IG DDPSVIYVKPGLEA
Sbjct: 121 RINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEA 180

Query: 181 DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKKS 235
           DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRW RLLEL+KS
Sbjct: 181 DLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 229

[Close]

BLAST of MS006628 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-54
Identity = 118/227 (51.98%), Postives = 153/227 (67.40%), Query Frame = 0


Query: 7   LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRLITISTS 66
           L++   +NS I +S   N    P S+  + K +ASS          S    +RLIT+S S
Sbjct: 6   LISPNLLNSKIKVSG--NTHHLPFSSL-SKKHQASSPIQAAINGGGSSKTVKRLITLSPS 65

Query: 67  GSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGKIVTSFT 126
             +W G W   Y +SL+DL L+DLVED    ++ V ++L +++HAS G +VDG+I+TS  
Sbjct: 66  EGKWNGNWKTQYDVSLRDLQLQDLVED-GPPNSRVSVDLSVQRHASMGLSVDGRIMTSIA 125

Query: 127 RKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEADLDSLVR 186
           RKC  CSS Y R I+ +F V +L S+R NR   LPEIG DDPSVIYV+PG EA+LDSLV+
Sbjct: 126 RKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQ 185

Query: 187 DTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKK 234
           DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRWSRLLELKK
Sbjct: 186 DTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of MS006628 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 208.4 bits (529), Expect = 6.4e-54
Identity = 115/227 (50.66%), Postives = 155/227 (68.28%), Query Frame = 0


Query: 7   LLTATNINSTISISTSFNNKAAPKSAFHTFKIRASSNKNDISLRRSSKPPRRRLITISTS 66
           L++   +NS I +S + ++       F +   +  ++   I+   SSK   +RLIT+S S
Sbjct: 6   LISPNLLNSKIKVSGNTHH-----LPFSSLSKKHQASSAAINGGGSSKTV-KRLITLSPS 65

Query: 67  GSRWQGKWSCDYLLSLQDLSLEDLVEDEHNKDANVFINLCIEKHASFGFTVDGKIVTSFT 126
             +W G W   Y +SL+DL L+DLVED    ++ V ++L +++HAS G +VDG+I+TS  
Sbjct: 66  EGKWNGNWKTQYDVSLRDLQLQDLVED-GPPNSRVSVDLSVQRHASMGLSVDGRIMTSIA 125

Query: 127 RKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGCDDPSVIYVKPGLEADLDSLVR 186
           RKC  CSS Y R I+ +F V +L S+R NR   LPEIG DDPSVIYV+PG EA+LDSLV+
Sbjct: 126 RKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQ 185

Query: 187 DTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWSRLLELKK 234
           DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRWSRLLELKK
Sbjct: 186 DTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of MS006628 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153177.1	8.2e-128	99.58	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_022153176.1	2.6e-113	99.53	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_022983270.1	7.0e-103	85.53	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_038906104.1	1.0e-101	85.11	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_023527889.1	1.1e-100	84.26	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of MS006628 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	4.0e-53	51.98	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of MS006628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DI80	4.0e-128	99.58	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1DJV3	1.2e-113	99.53	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1J5E3	3.4e-103	85.53	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A5D3C1F8	5.4e-101	85.53	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	5.4e-101	85.53	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]

BLAST of MS006628 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	2.9e-54	51.98	Protein of unknown function (DUF177)	[more]
AT3G19800.2	6.4e-54	50.66	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 117..232 e-value: 5.1E-13 score: 49.2
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006628.1	MS006628.1	mRNA