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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CCATCTACAATTAAAAAACTGAGGCAAGCAGCGCGAGAAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTGGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAATGAC mRNA sequence CCATCTACAATTAAAAAACTGAGGCAAGCAGCGCGAGAAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTGGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAATGAC Coding sequence (CDS) CCATCTACAATTAAAAAACTGAGGCAAGCAGCGCGAGAAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTGGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAATGAC Protein sequence PSTIKKLRQAAREALEEVERTVEVEDSHKSLKDLERLCGFPIPSCDGFLDTMHFYGLYLKND
Homology
BLAST of MS006379 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa]) HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14 Identity = 40/61 (65.57%), Postives = 53/61 (86.89%), Query Frame = 0
Query: 1 PSTIKKLRQAAREALEEVERTVEVEDSHKSLKDLERLCGFPIPSCDGFLDTMHFYGLYLK 60
PS+ +++R+AAR ALEE+ER+V++EDSHKS+KDLERLCG+PIP GF + M +YGLYLK
Sbjct: 136 PSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLK 195
Query: 61 N 62
N
Sbjct: 196 N 196
BLAST of MS006379 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12 Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0
Query: 5 KKLRQAAREALEEVERTVEVEDSHKSLKDLERLCGFPIPSCDGFLDTMHFYGLYLKN 62
+++R AAR LEEVER V V+DSH SL++ ERLCGFPIP GFL+ MH+YGLYLK+
Sbjct: 126 EEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMHYYGLYLKD 182
BLAST of MS006379 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15 Identity = 40/61 (65.57%), Postives = 53/61 (86.89%), Query Frame = 0
Query: 1 PSTIKKLRQAAREALEEVERTVEVEDSHKSLKDLERLCGFPIPSCDGFLDTMHFYGLYLK 60
PS+ +++R+AAR ALEE+ER+V++EDSHKS+KDLERLCG+PIP GF + M +YGLYLK
Sbjct: 136 PSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLK 195
Query: 61 N 62
N
Sbjct: 196 N 196
BLAST of MS006379 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14 Identity = 39/60 (65.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query: 2 STIKKLRQAAREALEEVERTVEVEDSHKSLKDLERLCGFPIPSCDGFLDTMHFYGLYLKN 61
++ +++R+AAR+ALE++ER+V+VEDSHKS+KDLERLCG+PIPS GF + M +YGLYLKN
Sbjct: 154 TSTEEIRRAARQALEDLERSVDVEDSHKSVKDLERLCGWPIPSVGGFKNRMEYYGLYLKN 213
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061663.1 | 1.2e-14 | 65.57 | transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran... | [more] |
| KAG6571342.1 | 9.7e-12 | 64.91 | hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DC97 | 5.9e-15 | 65.57 | Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| A0A0A0KGL2 | 1.7e-14 | 65.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 4..24 |
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| MS006379.1 | MS006379.1 | mRNA |
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