MS006227 (gene) Bitter gourd (TR) v1

Overview


Name	MS006227
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UBA domain-containing protein
Location	scaffold96: 1343894 .. 1345869 (+)
RNA-Seq Expression	MS006227
Synteny	MS006227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACGATTACAGAAACAAGCCCGGCCACTACGATTCTCACCCGCCGATGTACGGCCCGCCGGCTTCCGCCTCCCCATCGCCGTCGCTTCATCCAATGTATGGTCACTCTATGTCTTTGTATCCGAGGATCGGTCAACAAGGTCATTCGACGGCGCCTCCGGTGGCCCGAATCTCCTCCCACCACCATTCTTCTTCTCCCTCTCCTTCTTCTCCTTCACCTCCATCTTCTTGTAAGTCTATCGTCTTCGATCTTCTCGATTGGTTTTGTAGCCTATGCGGATATTAGAAATGGTTTTAGGGTTTGCTTGGATTATTTGTTTTCCCACATGAAATTGATGGGATTTTGTGATCCTACTCCCTTAATCTTGTTATTTCATTTTGGTTGGTTGATTATACAGCAGGATTGGGCATCAGGGTTACAATCAAGCCGGAATATCGAATTACTCCGCCGGTGAGTTTTCATTTTTACCTCCATCGATTCTTATTTAGATACTGTGATAAATGTAAATTGGATCATGATATGGGTGACTTTCTGGTTCTTTACTTGGTGTATGTTAATGTTCTTCTTCTAGCCTCTTATGTGGTTACCTTGATGCCAATGTATTTGCTTCGGATTTTGATGGGTTAACTTTTTTCTTGTAGCCTCAATTATCGCCACAAATTAGAGATATTCCTCGGAGCAATTTCCAATTTGATTTTGAGTTTGAGAAGAAGGTTTTAGCTGAAGCAGAGAAAGAAACACAGAATTGGAGTCGGTTTGGGTTGGACAATCTTCCTGCTAAACCAGCAGAACCGACATCTACAATGGTAACATCTCCTTTTTATTTTTTTAAAAATGACTTTTTTCCCCTCTTTTTCCTTCATTGCGGAGCTTCTTTACATAATTTTAGCCGTTTTAGAAGGATTTTATCTAGTAAAGTTTATTGTACTTGAAGCATCAGTAGTGGTTGATTTCTTTTTCTGACATCATGTATCATATATGTAATACCTTAGTAATTCTATTATTTATGGTTTGTTCACTAAAGCTATGTGGTTCGTGTTAAAAACATTGCTTTTTTTGTTACTTGTCTCTAGAGAAAGAAAAGAATCTACTTGATAATGGCATTATATGGTTTGACTCGCGGGCTCAGTTCCTGAGTTCCTTTTTGAGGTCTACATTCCGCAATCTATATACTTGTCGTCATGAGAATACATGTTTCACTGTAGGGCTCTCTTGGAGATCCAGTTGTGAGCAAGTATATTGCATCTGGCTTGAATCGGGAAGCTGTACCGTTTGCAGTTGCTAATTATGGAGACAATCCAACCAAGGTAATTATGAATGATTGGTGGAGTGACATCCTTTGATATGGAATGTGATCTTATTGTAACGTACTTGAAATATACTTGCTAGGATTTTTCCATATGTTAGGCGACATGTCTAAAGAGCTCTGAGGATCATCTTTACTTGTAATTCAGTTACTCATGATGGAGCGATTGTGCTATCCGTATCTATTGATTTTTCTGATGTTATCTTTAATTTTGCTCTATGAACATTCCAATATACTATTTGATTCAATTCCATTTATCATGTATCTATTGATTTTTCTGATGTTATCTTTAATTTTGCACTATGAACATTCCAATATACTATTTGATTCAATTCCATTTCTCCTATGATAAGGTTAAATTATAGATTCGGTCTTTAAAGTTTATTCTTGTTTTTTAATCTGGCCTGTGAAGTTCAAAAAGTGCTATTCTACAGTCCCCAGTTCTAATAACTTCCTAATTTAGTCCCTGCATTCCTTTTGTGTAAATTACTTCATTTTGTGAAAGATTACCGACTCCCTTCAATTTTTGTAGGTTCAAGAATTCGCGAAAGGCTACACACTCCTACGAGAAATGGGATTCTCATCGAATAAGGTGGTCGAGGCATTACTCATGTACGACAACGATACCGATAAGGCTGTAGCTCATTTTCTCAGCGGTACGTCT

mRNA sequence

ATGGCTTACGATTACAGAAACAAGCCCGGCCACTACGATTCTCACCCGCCGATGTACGGCCCGCCGGCTTCCGCCTCCCCATCGCCGTCGCTTCATCCAATGTATGGTCACTCTATGTCTTTGTATCCGAGGATCGGTCAACAAGGTCATTCGACGGCGCCTCCGGTGGCCCGAATCTCCTCCCACCACCATTCTTCTTCTCCCTCTCCTTCTTCTCCTTCACCTCCATCTTCTTCAGGATTGGGCATCAGGGTTACAATCAAGCCGGAATATCGAATTACTCCGCCGCCTCAATTATCGCCACAAATTAGAGATATTCCTCGGAGCAATTTCCAATTTGATTTTGAGTTTGAGAAGAAGGTTTTAGCTGAAGCAGAGAAAGAAACACAGAATTGGAGTCGGTTTGGGTTGGACAATCTTCCTGCTAAACCAGCAGAACCGACATCTACAATGGGCTCTCTTGGAGATCCAGTTGTGAGCAAGTATATTGCATCTGGCTTGAATCGGGAAGCTGTACCGTTTGCAGTTGCTAATTATGGAGACAATCCAACCAAGGTTCAAGAATTCGCGAAAGGCTACACACTCCTACGAGAAATGGGATTCTCATCGAATAAGGTGGTCGAGGCATTACTCATGTACGACAACGATACCGATAAGGCTGTAGCTCATTTTCTCAGCGGTACGTCT

Coding sequence (CDS)

ATGGCTTACGATTACAGAAACAAGCCCGGCCACTACGATTCTCACCCGCCGATGTACGGCCCGCCGGCTTCCGCCTCCCCATCGCCGTCGCTTCATCCAATGTATGGTCACTCTATGTCTTTGTATCCGAGGATCGGTCAACAAGGTCATTCGACGGCGCCTCCGGTGGCCCGAATCTCCTCCCACCACCATTCTTCTTCTCCCTCTCCTTCTTCTCCTTCACCTCCATCTTCTTCAGGATTGGGCATCAGGGTTACAATCAAGCCGGAATATCGAATTACTCCGCCGCCTCAATTATCGCCACAAATTAGAGATATTCCTCGGAGCAATTTCCAATTTGATTTTGAGTTTGAGAAGAAGGTTTTAGCTGAAGCAGAGAAAGAAACACAGAATTGGAGTCGGTTTGGGTTGGACAATCTTCCTGCTAAACCAGCAGAACCGACATCTACAATGGGCTCTCTTGGAGATCCAGTTGTGAGCAAGTATATTGCATCTGGCTTGAATCGGGAAGCTGTACCGTTTGCAGTTGCTAATTATGGAGACAATCCAACCAAGGTTCAAGAATTCGCGAAAGGCTACACACTCCTACGAGAAATGGGATTCTCATCGAATAAGGTGGTCGAGGCATTACTCATGTACGACAACGATACCGATAAGGCTGTAGCTCATTTTCTCAGCGGTACGTCT

Protein sequence

MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS

Homology

[Close]

BLAST of MS006227 vs. NCBI nr
Match: XP_022157119.1 (uncharacterized protein LOC111023918 isoform X2 [Momordica charantia])

HSP 1 Score: 436.8 bits (1122), Expect = 1.2e-118
Identity = 219/229 (95.63%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARIS
Sbjct: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSPAPPVARIS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK
Sbjct: 61  SHHHS-----SSPSPPSSSGLGIGVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYG
Sbjct: 121 VLAEAEKETQNWSRFGLDNLPAKPGEPTSTMGSLGDPVASKYIASGLNREAVRFAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS
Sbjct: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 224

[Close]

BLAST of MS006227 vs. NCBI nr
Match: XP_022157118.1 (uncharacterized protein LOC111023918 isoform X1 [Momordica charantia])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 217/227 (95.59%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARIS
Sbjct: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSPAPPVARIS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK
Sbjct: 61  SHHHS-----SSPSPPSSSGLGIGVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYG
Sbjct: 121 VLAEAEKETQNWSRFGLDNLPAKPGEPTSTMGSLGDPVASKYIASGLNREAVRFAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG 228
           DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG
Sbjct: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG 222

[Close]

BLAST of MS006227 vs. NCBI nr
Match: XP_038874870.1 (uncharacterized protein LOC120067367 [Benincasa hispida])

HSP 1 Score: 384.4 bits (986), Expect = 6.8e-103
Identity = 197/230 (85.65%), Postives = 209/230 (90.87%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPGHYD+HPPMYGP AS+SPSPS HPMY  S S+YPRIGQQ  ST  PVAR+S
Sbjct: 1   MAYDYRNKPGHYDAHPPMYGPTASSSPSPSPHPMY--SQSMYPRIGQQAPSTTTPVARLS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHSSSPSP SPSP SSSGLGIRVTIKPEYRITPPPQLSPQI DIPRSNFQFDFEFEKK
Sbjct: 61  SHHHSSSPSP-SPSPSSSSGLGIRVTIKPEYRITPPPQLSPQIGDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAE-PTSTMGSLGDPVVSKYIASGLNREAVPFAVANY 180
           VLAEAEKET NW+RFGL++LP+KP E  TS+M S+GDPVVSKY+ASGL+REAV FAVANY
Sbjct: 121 VLAEAEKETPNWNRFGLEHLPSKPVESTTSSMASIGDPVVSKYVASGLSREAVSFAVANY 180

Query: 181 GDNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           GDNPTKVQEF KGYTLLREMGFSS KVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 181 GDNPTKVQEFVKGYTLLREMGFSSVKVVEALLMYDNDTDKAVAHFLGGTS 227

[Close]

BLAST of MS006227 vs. NCBI nr
Match: XP_022958203.1 (uncharacterized protein LOC111459499 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 8.9e-103
Identity = 191/229 (83.41%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+S
Sbjct: 1   MAYDYRNKPGYYNAHPPMYGPAASSSPSPSIHPMY--TQSMYPRIGQQGHSPAPPVARVS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLSPQ+ DIPRSNFQFDFEFEKK
Sbjct: 61  SHHHSSSAAP-SPSSPSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYG
Sbjct: 121 VLAEAEKETPNWNRFGLEHPPSRPVESSSSMGSPGDPVVSKYVASGLSREAVSLAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEF KGYTLLREMGF SNKVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 181 DNPTKVQEFVKGYTLLREMGFPSNKVVEALLMYDNDTDKAVAHFLGGTS 226

[Close]

BLAST of MS006227 vs. NCBI nr
Match: KAG7035731.1 (hypothetical protein SDJN02_02529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.0 bits (985), Expect = 8.9e-103
Identity = 191/229 (83.41%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+S
Sbjct: 44  MAYDYRNKPGYYNAHPPMYGPAASSSPSPSIHPMY--TQSMYPRIGQQGHSPAPPVARVS 103

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLSPQ+ DIPRSNFQFDFEFEKK
Sbjct: 104 SHHHSSSAAP-SPSSPSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKK 163

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYG
Sbjct: 164 VLAEAEKETPNWNRFGLEHPPSRPVESSSSMGSPGDPVVSKYVASGLSREAVSLAVANYG 223

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEF KGYTLLREMGF SNKVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 224 DNPTKVQEFVKGYTLLREMGFPSNKVVEALLMYDNDTDKAVAHFLGGTS 269

[Close]

BLAST of MS006227 vs. ExPASy TrEMBL
Match: A0A6J1DVL2 (uncharacterized protein LOC111023918 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023918 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.6e-119
Identity = 219/229 (95.63%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARIS
Sbjct: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSPAPPVARIS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK
Sbjct: 61  SHHHS-----SSPSPPSSSGLGIGVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYG
Sbjct: 121 VLAEAEKETQNWSRFGLDNLPAKPGEPTSTMGSLGDPVASKYIASGLNREAVRFAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS
Sbjct: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 224

[Close]

BLAST of MS006227 vs. ExPASy TrEMBL
Match: A0A6J1DSJ8 (uncharacterized protein LOC111023918 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023918 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.2e-118
Identity = 217/227 (95.59%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARIS
Sbjct: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSPAPPVARIS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK
Sbjct: 61  SHHHS-----SSPSPPSSSGLGIGVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYG
Sbjct: 121 VLAEAEKETQNWSRFGLDNLPAKPGEPTSTMGSLGDPVASKYIASGLNREAVRFAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG 228
           DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG
Sbjct: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSG 222

[Close]

BLAST of MS006227 vs. ExPASy TrEMBL
Match: A0A6J1H2H7 (uncharacterized protein LOC111459499 OS=Cucurbita moschata OX=3662 GN=LOC111459499 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.3e-103
Identity = 191/229 (83.41%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+S
Sbjct: 1   MAYDYRNKPGYYNAHPPMYGPAASSSPSPSIHPMY--TQSMYPRIGQQGHSPAPPVARVS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLSPQ+ DIPRSNFQFDFEFEKK
Sbjct: 61  SHHHSSSAAP-SPSSPSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYG
Sbjct: 121 VLAEAEKETPNWNRFGLEHPPSRPVESSSSMGSPGDPVVSKYVASGLSREAVSLAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEF KGYTLLREMGF SNKVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 181 DNPTKVQEFVKGYTLLREMGFPSNKVVEALLMYDNDTDKAVAHFLGGTS 226

[Close]

BLAST of MS006227 vs. ExPASy TrEMBL
Match: A0A6J1K3U0 (velvet complex subunit B OS=Cucurbita maxima OX=3661 GN=LOC111490923 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.6e-102
Identity = 189/229 (82.53%), Postives = 209/229 (91.27%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPV R+S
Sbjct: 1   MAYDYRNKPGYYNAHPPMYGPAASSSPSPSIHPMY--TQSMYPRIGQQGHSPAPPVPRVS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLSPQ+ DIPRSNFQFDFEFEKK
Sbjct: 61  SHHHSSSAAP-SPSSPSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVV+KY+ASGL+REAV  AVANYG
Sbjct: 121 VLAEAEKETPNWNRFGLEHPPSRPVESSSSMGSPGDPVVNKYVASGLSREAVSLAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEF KGYTLLREMGF SNKVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 181 DNPTKVQEFVKGYTLLREMGFPSNKVVEALLMYDNDTDKAVAHFLGGTS 226

[Close]

BLAST of MS006227 vs. ExPASy TrEMBL
Match: A0A0A0KNB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139700 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.9e-99
Identity = 189/229 (82.53%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARIS 60
           MAYD+RN  GHYDSH PMY   AS+SPSPS HPMY HSM  YPRIGQQ  S+ PPVAR+S
Sbjct: 1   MAYDFRNNSGHYDSHQPMYTSTASSSPSPSPHPMYSHSM--YPRIGQQAPSSTPPVARLS 60

Query: 61  SHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFEFEKK 120
           SHH+SSSP   SPSP SSSGLGIRVTIKPEYRITPPPQLSPQ+ DIPRSNFQFDFEFEKK
Sbjct: 61  SHHYSSSP---SPSPSSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKK 120

Query: 121 VLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYG 180
           VLAEAEKE  NW+RFGL++ P KP E TS+MGS+GDPVVSKY+ASGLNREAV FAVANYG
Sbjct: 121 VLAEAEKEAPNWNRFGLEHPPPKPVESTSSMGSIGDPVVSKYVASGLNREAVSFAVANYG 180

Query: 181 DNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
           DNPTKVQEF KGYTLLREMGFSS KVVEALLMYDNDTDKAVAHFL GTS
Sbjct: 181 DNPTKVQEFVKGYTLLREMGFSSIKVVEALLMYDNDTDKAVAHFLGGTS 224

[Close]

BLAST of MS006227 vs. TAIR 10
Match: AT5G53330.1 (Ubiquitin-associated/translation elongation factor EF1B protein )

HSP 1 Score: 246.5 bits (628), Expect = 2.1e-65
Identity = 142/236 (60.17%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 1   MAYDYRNKPGHYDSHPPMYGPPASASPSPSL-HPMYGHSMSLYPRIGQQ---GHSTAPPV 60
           M YDYRNK G      PMYGPP S SPSPS  HPMYG     YP+IGQQ   G     P 
Sbjct: 1   MDYDYRNKSGGPSYPRPMYGPP-STSPSPSSNHPMYG-----YPKIGQQTGPGPQFFSPP 60

Query: 61  ARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSNFQFDFE 120
            R SS  H++SP         SSG+GIRV +KPEYRITPPPQL P++ DI RS+FQFDF 
Sbjct: 61  ERNSSFQHNTSP---------SSGIGIRVNLKPEYRITPPPQLLPRVGDIHRSSFQFDFG 120

Query: 121 FEKKVLAEAEKETQNWSRFGLDNLPAKPAEPT-STMGSLG--DPVVSKYIASGLNREAVP 180
            E+KVLAEAEK+  +WS+FG +N PAK  EP+ S++G +   D VV KY ASGLNREAV 
Sbjct: 121 LERKVLAEAEKDNPDWSKFGSENPPAKFHEPSPSSVGQMQGVDHVVMKYTASGLNREAVN 180

Query: 181 FAVANYGDNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS 230
            AVANYGDNPTKVQEFA G+T +REMGF +N V +AL M++NDTDKA+AH L G+S
Sbjct: 181 IAVANYGDNPTKVQEFANGFTAIREMGFPTNAVADALFMFENDTDKALAHLLHGSS 221

The following BLAST results are available for this feature:

BLAST of MS006227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157119.1	1.2e-118	95.63	uncharacterized protein LOC111023918 isoform X2 [Momordica charantia]	[more]
XP_022157118.1	1.3e-117	95.59	uncharacterized protein LOC111023918 isoform X1 [Momordica charantia]	[more]
XP_038874870.1	6.8e-103	85.65	uncharacterized protein LOC120067367 [Benincasa hispida]	[more]
XP_022958203.1	8.9e-103	83.41	uncharacterized protein LOC111459499 [Cucurbita moschata]	[more]
KAG7035731.1	8.9e-103	83.41	hypothetical protein SDJN02_02529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS006227 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVL2	5.6e-119	95.63	uncharacterized protein LOC111023918 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DSJ8	6.2e-118	95.59	uncharacterized protein LOC111023918 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1H2H7	4.3e-103	83.41	uncharacterized protein LOC111459499 OS=Cucurbita moschata OX=3662 GN=LOC1114594...	[more]
A0A6J1K3U0	3.6e-102	82.53	velvet complex subunit B OS=Cucurbita maxima OX=3661 GN=LOC111490923 PE=4 SV=1	[more]
A0A0A0KNB8	4.9e-99	82.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139700 PE=4 SV=1	[more]

BLAST of MS006227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53330.1	2.1e-65	60.17	Ubiquitin-associated/translation elongation factor EF1B protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042575	Ubiquitin-associated protein 1, C-terminal	GENE3D	1.20.120.1920	UBAP1 SOUBA domain	coord: 157..229 e-value: 1.8E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..68
None	No IPR available	PANTHER	PTHR15960:SF7	SUBFAMILY NOT NAMED	coord: 1..228
IPR038870	Ubiquitin-associated protein 1	PANTHER	PTHR15960	LD44032P	coord: 1..228
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 185..227 score: 9.34198
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 175..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006227.1	MS006227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043162	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
cellular_component	GO:0000813	ESCRT I complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043130	ubiquitin binding