MS005243 (gene) Bitter gourd (TR) v1

Overview


Name	MS005243
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein
Location	scaffold83: 253559 .. 256645 (+)
RNA-Seq Expression	MS005243
Synteny	MS005243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTAAGAAACTTGATGGAAGATTTTATCAGGTGAACTTTGAAATCTCTTATTTCTTTCCCTGTTAAAGCTTTTATAATCTTCCTTTGTTGTTTTTGTAGCTGGGTTCAATCTGTAAATCTCGTTAACATTATGTTAATTTAGTAGTTGATGCGTTTTATTAGCTTGTTTTTGTATGCTTCTATTGCTTCAAAGGTGAAAAAAGTGGCATTCAATGTCTATATATTTGCTGTTTCTTATTAAGGACTGCAAATCATTGAATTGAGGATGCATTTTACCATTCTACTTGCCCATTGTCAAGATTATAGATTTTGGTGTTGAAATGAATGTCAATGTATTTGTGCATTCTGATATATGGTTTTGGGAAATGGATGTTTCAATTCTCTACTGGGGGTTTGAATGGACTGCACACCTCAAAAAATAAAAAGGAAAAAAAAAGTTCTTCATGTGCAATGGATTCCTAAGCGAACATTTTATTTTCTGTAACTTTTGAAGTTGATTTTAACCCTAGTACTATGGCTCTTGACATTCTTAAAGTATTCTGATGTACATTTTGCGATTTTCTTATTTCTATAGGTTGTACCACTGTATCCTTTGAATTCTTAAATAGGTCTGTTTCTCCATTCTATTTTGGGAATTAGTTATTAGTTATTGCACATATTTCTCCATTTATCTATATAACCTCCAGATTTTATCCTTTGGAATGGAGCTCTTTTTTGTCTTGCTAGGTTAGGTCTGTAGTTGTTTGGCTTCCTCTTCTTGGGCTATTGTTTTTTTATTTTTTATTTTTGAAAAATTGTACTTTCAGTGAGAAGAACGAAATAATACAAAAAGAGAACTGTTAAACAAAAGTAGCCACACCAAAAGAACAAGTTTCAATCTTGCAAGATCAAACCTAATGAGAGAGTAATTACAAAAGGCTTTGGACACCGAGCCTAAAGAGAAACATGAAACCAAGCAAGAGTCCTAACATCTTCCCAAGATCTCCCAACTCCTCTAAGAATCCTGTTATTTCTCTCAATCCACAAGCCCCATAGAACAGTTAAGAAACCTGTCTGCCACATGTTCTGACCCCTGTCTCTAAATGGAGGGTGATGACTGATGAAGAACCTCCTCCAACATCGAACTACACTATGTAGTGTGAGCAAGGTGAACTCCAAAAGCCTAAAGCAAACAATTGTAGACAGATGGAGCAAACTGGCAGAACCAAAGGAGATCAAAGCAAAAGAGTGCCTCAAAGTGCGGGCAAAAGTATTAACCTTGCCATGTAAGACCTGTCAAGCAAAAAACCTAATCTTCTTTGGAATCTTAACTAATCTTCTTTGAGCTATTGTTATTGTAAGTCCTTTTTTATTCTTTCATTTTTCTTAATGAAAGCTCAATTTCTTTATAAAAATATTTCTCCATTGAAGTAGTAGGTGATGGACTGTCCATAATTCAAGGAAGCATCATTATCTATACTCCTAATATAAATATAGATGGGGAACCAAATAAATCTGCTTTCAATTATATATGGGAGAAGCAGGGCTACTACTTAGTTTGACCAAGCATAAGAACTTAATTTTCTTAGGGTACTTCTTACTACTAAGTTTTCCATATGGCCTTCAGTAAACTCCTATTATTATTATTATTATTTTTTTTTTGATATCTGGGAGTTGGAGCTTTGCTCCCCTATACCCAGGGCACCCGCGCTCGCTCCAAGGCCGGGACTCGAGAGACATCAAGGGTTTTTGGAATTAACCTCATCAGAAGGTTTAAACTTGAGACCTCTAAGCCAGTATGATCAAGAGACCCCAAGCATTTGCCAACTGAACTGCCCCTTGTGGGTCATTGTCAGTAAACTCCTATTAGTGTTTCAAGTTATAGAATTTAGATGCTCGAAGAACAGCCACATGGTCTATGGGTTCTCAAAATATAAGAAACTGTTATTGTCGTAATGTAAGAAACCCACACAGCACACACGTTCACCTCAGCTCTTTGATAGGCCGGAACTCTCCTTAGAGAGCACACTCTAAGGCCTTCTACACGACCAACAAAATAATCATATAAAATAAGGACTCTCCCACCCACATCCTCTAGATGCACCCACACAAAACTGTCCTTCAATCTCTCTTCTTGCCTTCTTTCTTCCTCGTGTAGGGGAATTGTATGGCTGGCCTATCGTTCCCATCAGCAAATGAAGCTTCTGATTTTTGTTTCTCTCCAAGCATCTAGCCATATGACGGTACCTTAACGATAGGAGAGACTAGAGAGGGTTGAGTGCTTGAGAAGACTGCTTGGACGACAAGGTTAATTGATCTCCCTTAGTAGGTTGTAGTTATGTTATGATATTATTTCGGATTGGTTGAAAAATATGCTTATGATTTAAATTTTAATCCATCCCCTCAATGTTGACTGCTGTGCTTGATTTGGCTGATGTGGCCCTTGCAAATAAGGGAGGCATAACCATGTTATCTTTGTATATTGTACTATGACATTGATGAATATTGAACCTTCATTAATTGAAATTGAAACTATCGAAATTCAAAGTCCCTACCAGATCTCTTCTGTGCATCATGTGTTTGTCAGATGCACCGTGAACTGTGAATTTTTCCGACTCTGTTACGGTTTATATGATAGATCCTGAATTAACTAATGACATTGTTACTTTTTTCTATATGGTAAAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTTTGTTGCGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGTGAAGACGATGGGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGATGATGACACTGATGAAGAAGACGATGATGATGATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAG

mRNA sequence

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTAAGAAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTTTGTTGCGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGTGAAGACGATGGGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGATGATGACACTGATGAAGAAGACGATGATGATGATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAG

Coding sequence (CDS)

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTAAGAAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTTTGTTGCGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGTGAAGACGATGGGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGATGATGACACTGATGAAGAAGACGATGATGATGATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAG

Protein sequence

MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE

Homology

[Close]

BLAST of MS005243 vs. NCBI nr
Match: XP_022143220.1 (uncharacterized protein LOC111013137 [Momordica charantia])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD KGELSKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 IGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE 152
           IGIMGDDDTDEEDDDDD DEEYDVEQEESKGE
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of MS005243 vs. NCBI nr
Match: XP_022936695.1 (uncharacterized protein LOC111443208 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 138/153 (90.20%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 IGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE 152
             ++GDDD DEE  DDDDDDEEYDVEQEE   E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of MS005243 vs. NCBI nr
Match: XP_023539684.1 (uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 137/153 (89.54%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKNELNKFPR 120

Query: 121 IGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE 152
             ++GDDD DEE  DDDDDDEEYDVEQEE   E
Sbjct: 121 FNMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of MS005243 vs. NCBI nr
Match: KAG6596891.1 (hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030167.1 hypothetical protein SDJN02_08514 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 5.2e-67
Identity = 137/153 (89.54%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKKELNKFPR 120

Query: 121 IGIMGDDDTDEEDDDD--DDEEYDVEQEESKGE 152
             ++GDDD DEEDDDD  DDEEYDVEQEE   E
Sbjct: 121 FNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE 153

[Close]

BLAST of MS005243 vs. NCBI nr
Match: XP_023005590.1 (uncharacterized protein LOC111498530 [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 9.7e-66
Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 IGIMGDDDTDEEDDDDDDEEYDVEQEESKGE 152
             ++GDDD DEEDDDDDD+  DVEQE  + E
Sbjct: 121 FSMIGDDDADEEDDDDDDD--DVEQEGERRE 149

[Close]

BLAST of MS005243 vs. ExPASy TrEMBL
Match: A0A6J1CN79 (uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013137 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.1e-74
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD KGELSKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 IGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE 152
           IGIMGDDDTDEEDDDDD DEEYDVEQEESKGE
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of MS005243 vs. ExPASy TrEMBL
Match: A0A6J1FEF6 (uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC111443208 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.6e-68
Identity = 138/153 (90.20%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 IGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE 152
             ++GDDD DEE  DDDDDDEEYDVEQEE   E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of MS005243 vs. ExPASy TrEMBL
Match: A0A6J1KXT7 (uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 IGIMGDDDTDEEDDDDDDEEYDVEQEESKGE 152
             ++GDDD DEEDDDDDD+  DVEQE  + E
Sbjct: 121 FSMIGDDDADEEDDDDDDD--DVEQEGERRE 149

[Close]

BLAST of MS005243 vs. ExPASy TrEMBL
Match: A0A7N2L1D1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 128/149 (85.91%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKF R
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTR 120

Query: 121 IGIMGDDDTDEEDDDDDDEEYDVEQEESK 150
             I  DDD DE+DDDDDD+EYDV+QEE K
Sbjct: 121 SSIYDDDDFDEDDDDDDDDEYDVDQEEKK 149

[Close]

BLAST of MS005243 vs. ExPASy TrEMBL
Match: A0A2N9FW87 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19297 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.8e-64
Identity = 126/149 (84.56%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLLKPHVKKEALMDLVARIGKHVYRRNGVLTDMKSFGNVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKHR+TKYGLEFL+EDDGKGELSKF R
Sbjct: 61  QGQLMQMTMMATPNINEELHYLNDEDRLLRWLLVKHRNTKYGLEFLTEDDGKGELSKFTR 120

Query: 121 IGIMGDDDTDEEDDDDDDEEYDVEQEESK 150
             I  D+D DE+DDDDDDEEYDV+QEE K
Sbjct: 121 SSIYDDEDIDEDDDDDDDEEYDVDQEERK 149

[Close]

BLAST of MS005243 vs. TAIR 10
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
           QGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G    SE +    +     
Sbjct: 61  QGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG---QSEKEDSLTVPNRLT 120

Query: 121 IGIMGDDDTDEEDDDD 137
            G + D  + +EDD++
Sbjct: 121 SGSLYDGSSSDEDDNN 133

[Close]

BLAST of MS005243 vs. TAIR 10
Match: AT3G18760.2 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-39
Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFPR 120
                Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G    SE +    +     
Sbjct: 61  -----QITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG---QSEKEDSLTVPNRLT 120

Query: 121 IGIMGDDDTDEEDDDD 137
            G + D  + +EDD++
Sbjct: 121 SGSLYDGSSSDEDDNN 128

The following BLAST results are available for this feature:

BLAST of MS005243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143220.1	1.3e-73	98.03	uncharacterized protein LOC111013137 [Momordica charantia]	[more]
XP_022936695.1	1.4e-67	90.20	uncharacterized protein LOC111443208 [Cucurbita moschata]	[more]
XP_023539684.1	3.0e-67	89.54	uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]	[more]
KAG6596891.1	5.2e-67	89.54	hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023005590.1	9.7e-66	88.08	uncharacterized protein LOC111498530 [Cucurbita maxima]	[more]

BLAST of MS005243 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN79	6.1e-74	98.03	uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1FEF6	6.6e-68	90.20	uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1KXT7	4.7e-66	88.08	uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530...	[more]
A0A7N2L1D1	1.4e-65	85.91	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9FW87	5.8e-64	84.56	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19297 PE=3 SV=1	[more]

BLAST of MS005243 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18760.1	1.1e-43	65.44	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT3G18760.2	4.9e-39	61.76	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..112 e-value: 4.0E-17 score: 64.0
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..95 e-value: 5.5E-16 score: 58.6
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..125
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 1..145
None	No IPR available	CDD	cd15465	bS6_mito	coord: 3..96 e-value: 8.4085E-26 score: 91.8253
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005243.1	MS005243.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome