MS005185 (gene) Bitter gourd (TR) v1

Overview


Name	MS005185
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	scaffold176: 3350799 .. 3350930 (+)
RNA-Seq Expression	MS005185
Synteny	MS005185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGAATAAAAAAGACATATGGTAGCATCGTAATCATAGAATATGACCCTAATCGAAATGCATACATTTGTCTCATATACTATAGGGATGGTGAGAAAAGACATATTTTACGTTCTAGAGAGACTATAATT

mRNA sequence

TTCAGAATAAAAAAGACATATGGTAGCATCGTAATCATAGAATATGACCCTAATCGAAATGCATACATTTGTCTCATATACTATAGGGATGGTGAGAAAAGACATATTTTACGTTCTAGAGAGACTATAATT

Coding sequence (CDS)

TTCAGAATAAAAAAGACATATGGTAGCATCGTAATCATAGAATATGACCCTAATCGAAATGCATACATTTGTCTCATATACTATAGGGATGGTGAGAAAAGACATATTTTACGTTCTAGAGAGACTATAATT

Protein sequence

FRIKKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII

Homology

[Close]

BLAST of MS005185 vs. NCBI nr
Match: QKZ95141.1 (ribosomal protein L2 [Parthenium hysterophorus])

HSP 1 Score: 69.7 bits (169), Expect = 7.1e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIYYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. NCBI nr
Match: QKZ95118.1 (ribosomal protein L2 [Parthenium hysterophorus])

HSP 1 Score: 69.7 bits (169), Expect = 7.1e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIYYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. NCBI nr
Match: YP_009309817.1 (ribosomal protein L2 [Orobanche pancicii] >ALJ02272.1 ribosomal protein L2 [Orobanche pancicii])

HSP 1 Score: 69.7 bits (169), Expect = 7.1e-09
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGTII 110

[Close]

BLAST of MS005185 vs. NCBI nr
Match: YP_009674176.1 (ribosomal protein L2 [Diphelypaea coccinea] >YP_009674178.1 ribosomal protein L2 [Diphelypaea coccinea] >QDJ93987.1 ribosomal protein L2 [Diphelypaea coccinea] >QDJ93989.1 ribosomal protein L2 [Diphelypaea coccinea])

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-09
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG I+ IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Sbjct: 70  KDVYGKIIRIEYDPNRNAYICLIHYRDGEKRYILHPRGTII 110

[Close]

BLAST of MS005185 vs. NCBI nr
Match: YP_009493746.1 (ribosomal protein L2 [Weigela florida] >AWN57661.1 ribosomal protein L2 [Weigela florida])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Sbjct: 70  KNIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy Swiss-Prot
Match: Q1KXP4 (50S ribosomal protein L2, chloroplastic OS=Helianthus annuus OX=4232 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy Swiss-Prot
Match: Q332R5 (50S ribosomal protein L2, chloroplastic OS=Lactuca sativa OX=4236 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy Swiss-Prot
Match: Q9B1H9 (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus OX=34305 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Sbjct: 70  KNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy Swiss-Prot
Match: A6MM78 (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Sbjct: 68  KNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII 108

[Close]

BLAST of MS005185 vs. ExPASy Swiss-Prot
Match: P06509 (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl2-A PE=1 SV=4)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Sbjct: 68  KDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII 108

[Close]

BLAST of MS005185 vs. ExPASy TrEMBL
Match: A0A7D5HSX0 (50S ribosomal protein L2, chloroplastic OS=Parthenium hysterophorus OX=183063 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIYYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy TrEMBL
Match: A0A7D5HHA6 (50S ribosomal protein L2, chloroplastic OS=Parthenium hysterophorus OX=183063 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIYYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. ExPASy TrEMBL
Match: A0A1C8E275 (50S ribosomal protein L2, chloroplastic OS=Orobanche pancicii OX=1115516 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGTII 110

[Close]

BLAST of MS005185 vs. ExPASy TrEMBL
Match: A0A514TND5 (50S ribosomal protein L2, chloroplastic OS=Phelypaea coccinea OX=223087 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG I+ IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Sbjct: 70  KDVYGKIIRIEYDPNRNAYICLIHYRDGEKRYILHPRGTII 110

[Close]

BLAST of MS005185 vs. ExPASy TrEMBL
Match: A0A2U8XH78 (50S ribosomal protein L2, chloroplastic OS=Weigela florida OX=79612 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Sbjct: 70  KNIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-11
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII 110

[Close]

BLAST of MS005185 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-11
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII 45
           K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Sbjct: 70  KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII 110

The following BLAST results are available for this feature:

BLAST of MS005185 vs. NCBI nr


Match Name	E-value	Identity	Description
QKZ95141.1	7.1e-09	78.05	ribosomal protein L2 [Parthenium hysterophorus]	[more]
QKZ95118.1	7.1e-09	78.05	ribosomal protein L2 [Parthenium hysterophorus]	[more]
YP_009309817.1	7.1e-09	78.05	ribosomal protein L2 [Orobanche pancicii] >ALJ02272.1 ribosomal protein L2 [Orob...	[more]
YP_009674176.1	9.3e-09	75.61	ribosomal protein L2 [Diphelypaea coccinea] >YP_009674178.1 ribosomal protein L2...	[more]
YP_009493746.1	2.1e-08	75.61	ribosomal protein L2 [Weigela florida] >AWN57661.1 ribosomal protein L2 [Weigela...	[more]

BLAST of MS005185 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1KXP4	3.5e-11	75.61	50S ribosomal protein L2, chloroplastic OS=Helianthus annuus OX=4232 GN=rpl2-A P...	[more]
Q332R5	3.5e-11	75.61	50S ribosomal protein L2, chloroplastic OS=Lactuca sativa OX=4236 GN=rpl2-A PE=3...	[more]
Q9B1H9	1.3e-10	73.17	50S ribosomal protein L2, chloroplastic OS=Lotus japonicus OX=34305 GN=rpl2-A PE...	[more]
A6MM78	1.8e-10	73.17	50S ribosomal protein L2, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl2-A...	[more]
P06509	1.8e-10	73.17	50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl2-A P...	[more]

BLAST of MS005185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D5HSX0	3.4e-09	78.05	50S ribosomal protein L2, chloroplastic OS=Parthenium hysterophorus OX=183063 GN...	[more]
A0A7D5HHA6	3.4e-09	78.05	50S ribosomal protein L2, chloroplastic OS=Parthenium hysterophorus OX=183063 GN...	[more]
A0A1C8E275	3.4e-09	78.05	50S ribosomal protein L2, chloroplastic OS=Orobanche pancicii OX=1115516 GN=rpl2...	[more]
A0A514TND5	4.5e-09	75.61	50S ribosomal protein L2, chloroplastic OS=Phelypaea coccinea OX=223087 GN=rpl2 ...	[more]
A0A2U8XH78	1.0e-08	75.61	50S ribosomal protein L2, chloroplastic OS=Weigela florida OX=79612 GN=rpl2 PE=3...	[more]

BLAST of MS005185 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.6e-11	73.17	ribosomal protein L2	[more]
ATCG01310.1	1.6e-11	73.17	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 7..39 e-value: 3.1E-10 score: 39.8
None	No IPR available	GENE3D	2.40.50.140		coord: 1..43 e-value: 2.1E-11 score: 45.3
None	No IPR available	PANTHER	PTHR13691:SF55	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 4..44
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 4..44
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 6..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005185.1	MS005185.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome