MS005017 (gene) Bitter gourd (TR) v1

Overview
NameMS005017
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold176: 2128240 .. 2128353 (-)
RNA-Seq ExpressionMS005017
SyntenyMS005017
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCTAATCCTAAATTTACCAGGACTATTCCAGTGAGTCTTCCTAGAGTGAACAAAAAGATGGATCCTACTGCAAATAACATGGGTTTTTGTGTTATATCAAACCCCCCACAT

mRNA sequence

GTGTCTAATCCTAAATTTACCAGGACTATTCCAGTGAGTCTTCCTAGAGTGAACAAAAAGATGGATCCTACTGCAAATAACATGGGTTTTTGTGTTATATCAAACCCCCCACAT

Coding sequence (CDS)

GTGTCTAATCCTAAATTTACCAGGACTATTCCAGTGAGTCTTCCTAGAGTGAACAAAAAGATGGATCCTACTGCAAATAACATGGGTTTTTGTGTTATATCAAACCCCCCACAT

Protein sequence

VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH
Homology
[Close]
BLAST of MS005017 vs. NCBI nr
Match: KAF5767741.1 (hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          +S+P+F  TIPVS P VNKKMDPTANNMG      PPH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMDPTANNMGVLYCIEPPH 38

[Close]
BLAST of MS005017 vs. NCBI nr
Match: KAF1856899.1 (hypothetical protein Lal_00001930 [Lupinus albus])

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          +S+P+F  TIPVS P VNKKM+PTANNMG      PPH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEPPH 38

[Close]
BLAST of MS005017 vs. NCBI nr
Match: EXB58280.1 (hypothetical protein L484_015614 [Morus notabilis])

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          + +P+F RTIPVSL  VNKKM+P ANNMG    + PPH
Sbjct: 2  ILSPEFVRTIPVSLAMVNKKMNPIANNMGVLYCNEPPH 39

[Close]
BLAST of MS005017 vs. ExPASy TrEMBL
Match: M8AUQ9 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-05
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          +S+P+F RTIPVS P VNKKM+PTANNMG      PPH
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTANNMGVLYCIEPPH 38

[Close]
BLAST of MS005017 vs. ExPASy TrEMBL
Match: A0A6A5L812 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          +S+P+F  TIPVS P VNKKM+PTANNMG      PPH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEPPH 38

[Close]
BLAST of MS005017 vs. ExPASy TrEMBL
Match: W9QY14 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015614 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 1  VSNPKFTRTIPVSLPRVNKKMDPTANNMGFCVISNPPH 39
          + +P+F RTIPVSL  VNKKM+P ANNMG    + PPH
Sbjct: 2  ILSPEFVRTIPVSLAMVNKKMNPIANNMGVLYCNEPPH 39

The following BLAST results are available for this feature:
BLAST of MS005017 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5767741.11.6e-0465.79hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus][more]
KAF1856899.15.9e-0463.16hypothetical protein Lal_00001930 [Lupinus albus][more]
EXB58280.17.8e-0460.53hypothetical protein L484_015614 [Morus notabilis][more]
BLAST of MS005017 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS005017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
M8AUQ94.4e-0565.79Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1[more]
A0A6A5L8122.9e-0463.16Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1[more]
W9QY143.8e-0460.53Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015614 PE=4 SV=1[more]
BLAST of MS005017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005017.1MS005017.1mRNA