MS004712 (gene) Bitter gourd (TR) v1

Overview
NameMS004712
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold741: 308303 .. 308413 (-)
RNA-Seq ExpressionMS004712
SyntenyMS004712
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAAAATTTGAATAAAACCTATATTGCTCTTATTCAGAAAGTGAAGCATCTGAGGTTAGTGTCTGATTCTAGACCCATTAGCTTATGTAATGTGTGTTATAAGATCATT

mRNA sequence

ATCGAAAATTTGAATAAAACCTATATTGCTCTTATTCAGAAAGTGAAGCATCTGAGGTTAGTGTCTGATTCTAGACCCATTAGCTTATGTAATGTGTGTTATAAGATCATT

Coding sequence (CDS)

ATCGAAAATTTGAATAAAACCTATATTGCTCTTATTCAGAAAGTGAAGCATCTGAGGTTAGTGTCTGATTCTAGACCCATTAGCTTATGTAATGTGTGTTATAAGATCATT

Protein sequence

IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII
Homology
BLAST of MS004712 vs. NCBI nr
Match: XP_018853114.2 (uncharacterized protein LOC109015083 [Juglans regia])

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
           ++NLN TYI LI KVK  +LV+D RPISLCNV YKII
Sbjct: 447 LQNLNDTYIVLIPKVKEPKLVTDFRPISLCNVMYKII 483

BLAST of MS004712 vs. NCBI nr
Match: KAF5458478.1 (hypothetical protein F2P56_022503 [Juglans regia])

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
           ++NLN TYI LI KVK  +LV+D RPISLCNV YKII
Sbjct: 448 LQNLNDTYIVLIPKVKEPKLVTDFRPISLCNVMYKII 484

BLAST of MS004712 vs. NCBI nr
Match: XP_030970335.1 (uncharacterized protein LOC115990665 [Quercus lobata])

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 2   ENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
           E+LN T+IALI KVKH + V+D RPISLCNV YK+I
Sbjct: 361 ESLNSTFIALIPKVKHPKKVADFRPISLCNVVYKLI 396

BLAST of MS004712 vs. NCBI nr
Match: XP_042969109.1 (uncharacterized protein LOC122301799 [Carya illinoinensis])

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1   IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
           I  LN+TYIALI K KH  LVS+ RPISLCNV YK++
Sbjct: 408 IAELNETYIALIPKKKHPTLVSEYRPISLCNVIYKVV 444

BLAST of MS004712 vs. ExPASy TrEMBL
Match: A0A2I4HAC4 (uncharacterized protein LOC109015083 OS=Juglans regia OX=51240 GN=LOC109015083 PE=4 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
           ++NLN TYI LI KVK  +LV+D RPISLCNV YKII
Sbjct: 447 LQNLNDTYIVLIPKVKEPKLVTDFRPISLCNVMYKII 483

BLAST of MS004712 vs. ExPASy TrEMBL
Match: A0A5B7A5I4 (Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_021400 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-04
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  IENLNKTYIALIQKVKHLRLVSDSRPISLCNVCYKII 38
          I  +NKTYI LI K+K+ R VSD RPISLCNV YK+I
Sbjct: 32 IAGINKTYIVLIPKIKNSRKVSDFRPISLCNVVYKVI 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_018853114.22.6e-0470.27uncharacterized protein LOC109015083 [Juglans regia][more]
KAF5458478.12.6e-0470.27hypothetical protein F2P56_022503 [Juglans regia][more]
XP_030970335.14.4e-0469.44uncharacterized protein LOC115990665 [Quercus lobata][more]
XP_042969109.19.9e-0467.57uncharacterized protein LOC122301799 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2I4HAC41.3e-0470.27uncharacterized protein LOC109015083 OS=Juglans regia OX=51240 GN=LOC109015083 P... [more]
A0A5B7A5I42.8e-0467.57Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004712.1MS004712.1mRNA