MS004690 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGCTTTTCTATCGAAGATCGGAGCTTTTCTATCAAGCTTGTTCGGCCCCCCGGCGGCGAGCGCCGATGCTGCGTCGTCGGAACCGTCGTCGGTGCTGTCTTTCCACTCTTCCGCCAGATGGAAACTCCACTTCAATTCTGCGCAGGATTCCTCCAAGCTCGTAAGTGTCAATTTTACTTTTTCCAATTGCATGTGATTCACTGAAGGGAATGTTTTCTAGGGTTACTGTTTTCAGTTCGATCGGTGATCTGATTGTTCTTTATTCGTTGAATTTTATGAACTGTGCGAGGATAGATGGTGATTGATTTCTCCGCGACTTGGTGTGGACCCTGTAGGCTCATGGAGCCGTCCTTCAACGCCATGGCCAACAAATACACCGATGTCGAGTTCGTCAAAATTGATGTCGATGAGTTATCTGTATGGCTTCTTCTTTCTCCCAATTTTGAGTCCCCTTGGTTCTGTATCAGGTTTTGAACTCCAATTATTTGAAAATTTTGAAATATACTTTTTCTTAGGTTAGAATTGACTGATATTAAGTTTTAACCATATAAGTTGGTAGGAATGTAGCAGAGAAATTAGTCCAGAAAAGTTTAAATTTCTGCCAATTTCTTAAAAATTTTGGAGGAATAAGAAACTTTGGCAAATTCCTTCTCTAGATTTCTGACAACTCACTCATCATATGACACTCTGTAAGTTTATCATCGGTCCATTGTTGAGATTTCTGCCAATTTCTTAGAAATTTGGAGTGGGACTCGGTCAAGTGATCCAATTTTTTCCCTAGATTTGTATAGTATGATGTCATGTAAGTTTATTATGACCAATTTTAGCATTGACCCTAGATTTCTGTCACTGAATTTGATATCAGGTAAGTTTATCCTCACTAAGTTGGACCTAGATTTCTCCAAGTCACTAAATATGATATCAAGCACCGATAGAAAGGTTATAATTGAAAAATATTATAACACAAGGGACTAAAGTAAAAGTTTTTTGAACAACAAGGACTAAATTGAAAACAAAAATCCTCCGAACACTGGAGCCTAAAATATATACCTAGTCAGAATCTAATCCAAAGACTAACAATTTAACACACTGGTTTGTTGAATCAGGATGTAGCACAAGATTTTGGAGTTCAAGCGATGCCAACATTTGTGTTGCTGAGGAGAGGGAAGGTAGTGGATACAGTGGTTGGAGCCCGTAAGGAAGAGCTGGAGAAGAAGATTCAGAGGCACCGATCT ATGGGAGCTTTTCTATCGAAGATCGGAGCTTTTCTATCAAGCTTGTTCGGCCCCCCGGCGGCGAGCGCCGATGCTGCGTCGTCGGAACCGTCGTCGGTGCTGTCTTTCCACTCTTCCGCCAGATGGAAACTCCACTTCAATTCTGCGCAGGATTCCTCCAAGCTCATGGTGATTGATTTCTCCGCGACTTGGTGTGGACCCTGTAGGCTCATGGAGCCGTCCTTCAACGCCATGGCCAACAAATACACCGATGTCGAGTTCGTCAAAATTGATGTCGATGAGTTATCTGATGTAGCACAAGATTTTGGAGTTCAAGCGATGCCAACATTTGTGTTGCTGAGGAGAGGGAAGGTAGTGGATACAGTGGTTGGAGCCCGTAAGGAAGAGCTGGAGAAGAAGATTCAGAGGCACCGATCT ATGGGAGCTTTTCTATCGAAGATCGGAGCTTTTCTATCAAGCTTGTTCGGCCCCCCGGCGGCGAGCGCCGATGCTGCGTCGTCGGAACCGTCGTCGGTGCTGTCTTTCCACTCTTCCGCCAGATGGAAACTCCACTTCAATTCTGCGCAGGATTCCTCCAAGCTCATGGTGATTGATTTCTCCGCGACTTGGTGTGGACCCTGTAGGCTCATGGAGCCGTCCTTCAACGCCATGGCCAACAAATACACCGATGTCGAGTTCGTCAAAATTGATGTCGATGAGTTATCTGATGTAGCACAAGATTTTGGAGTTCAAGCGATGCCAACATTTGTGTTGCTGAGGAGAGGGAAGGTAGTGGATACAGTGGTTGGAGCCCGTAAGGAAGAGCTGGAGAAGAAGATTCAGAGGCACCGATCT MGAFLSKIGAFLSSLFGPPAASADAASSEPSSVLSFHSSARWKLHFNSAQDSSKLMVIDFSATWCGPCRLMEPSFNAMANKYTDVEFVKIDVDELSDVAQDFGVQAMPTFVLLRRGKVVDTVVGARKEELEKKIQRHRS Homology
BLAST of MS004690 vs. NCBI nr
Match: XP_022157660.1 (thioredoxin H2 [Momordica charantia]) HSP 1 Score: 267.7 bits (683), Expect = 5.6e-68 Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of MS004690 vs. NCBI nr
Match: XP_038903635.1 (thioredoxin H2 [Benincasa hispida]) HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61 Identity = 123/139 (88.49%), Postives = 132/139 (94.96%), Query Frame = 0
BLAST of MS004690 vs. NCBI nr
Match: XP_022934421.1 (thioredoxin H2-like [Cucurbita moschata] >XP_023527983.1 thioredoxin H2-like [Cucurbita pepo subsp. pepo] >KAG7017722.1 Thioredoxin H2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 240.7 bits (613), Expect = 7.3e-60 Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of MS004690 vs. NCBI nr
Match: KAG6580981.1 (Thioredoxin H2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59 Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of MS004690 vs. NCBI nr
Match: XP_022983881.1 (thioredoxin H2-like [Cucurbita maxima]) HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59 Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of MS004690 vs. ExPASy Swiss-Prot
Match: Q38879 (Thioredoxin H2 OS=Arabidopsis thaliana OX=3702 GN=TRX2 PE=1 SV=2) HSP 1 Score: 165.2 bits (417), Expect = 5.1e-40 Identity = 77/133 (57.89%), Postives = 109/133 (81.95%), Query Frame = 0
BLAST of MS004690 vs. ExPASy Swiss-Prot
Match: Q851R5 (Thioredoxin H2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0800700 PE=2 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30 Identity = 66/128 (51.56%), Postives = 94/128 (73.44%), Query Frame = 0
BLAST of MS004690 vs. ExPASy Swiss-Prot
Match: Q6Z4I3 (Thioredoxin H2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190800 PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 4.5e-28 Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of MS004690 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2) HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26 Identity = 54/112 (48.21%), Postives = 83/112 (74.11%), Query Frame = 0
BLAST of MS004690 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.2e-26 Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of MS004690 vs. ExPASy TrEMBL
Match: A0A6J1DTQ2 (thioredoxin H2 OS=Momordica charantia OX=3673 GN=LOC111024317 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 2.7e-68 Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of MS004690 vs. ExPASy TrEMBL
Match: A0A6J1F1R9 (thioredoxin H2-like OS=Cucurbita moschata OX=3662 GN=LOC111441603 PE=4 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 3.6e-60 Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of MS004690 vs. ExPASy TrEMBL
Match: A0A6J1J3L5 (thioredoxin H2-like OS=Cucurbita maxima OX=3661 GN=LOC111482363 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59 Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of MS004690 vs. ExPASy TrEMBL
Match: A0A6J1I8S1 (thioredoxin H2-like OS=Cucurbita maxima OX=3661 GN=LOC111470205 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 6.7e-59 Identity = 119/139 (85.61%), Postives = 126/139 (90.65%), Query Frame = 0
BLAST of MS004690 vs. ExPASy TrEMBL
Match: A0A5D3DQ11 (Thioredoxin H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008280 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 8.8e-59 Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 0
BLAST of MS004690 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 ) HSP 1 Score: 165.2 bits (417), Expect = 3.7e-41 Identity = 77/133 (57.89%), Postives = 109/133 (81.95%), Query Frame = 0
BLAST of MS004690 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein ) HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27 Identity = 54/112 (48.21%), Postives = 83/112 (74.11%), Query Frame = 0
BLAST of MS004690 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 ) HSP 1 Score: 118.2 bits (295), Expect = 5.1e-27 Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0
BLAST of MS004690 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 ) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26 Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 0
BLAST of MS004690 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 ) HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26 Identity = 51/107 (47.66%), Postives = 77/107 (71.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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