MS004616 (gene) Bitter gourd (TR) v1

Overview


Name	MS004616
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive family protein
Location	scaffold995: 717922 .. 718365 (+)
RNA-Seq Expression	MS004616
Synteny	MS004616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTGTCAAGGCAACTGGGGAGGTCCTCTTCATACAGCAGCCTCAGGTCCAAATCCACAAGAGAAGATCTATGGAATATTTGTGGAACAAAAATGGAAGAAGAAGAAGAAGAAGAAGATCATCAACAACAACAGCTTGAAAAGGTGAGGGGCAGTAATGTAATTATGTATGTTGGAAGCACAAGAAAAAAATATGTAATAAGTTCAAAGTTCTTGAGCCACCCTTTGGTAAATGCTCTGATTGATAAATCCAAATCCAAATCCAAATCCAAGTCTGAGGATTGTGAAGCCATTTCAGTGAGGTGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAACATCACTTTTGATTCTAATTTGGAGGAATTGGCTGATCTCTATGTCTTT

mRNA sequence

ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTGTCAAGGCAACTGGGGAGGTCCTCTTCATACAGCAGCCTCAGGTCCAAATCCACAAGAGAAGATCTATGGAATATTTGTGGAACAAAAATGGAAGAAGAAGAAGAAGAAGAAGATCATCAACAACAACAGCTTGAAAAGGTGAGGGGCAGTAATGTAATTATGTATGTTGGAAGCACAAGAAAAAAATATGTAATAAGTTCAAAGTTCTTGAGCCACCCTTTGGTAAATGCTCTGATTGATAAATCCAAATCCAAATCCAAATCCAAGTCTGAGGATTGTGAAGCCATTTCAGTGAGGTGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAACATCACTTTTGATTCTAATTTGGAGGAATTGGCTGATCTCTATGTCTTT

Coding sequence (CDS)

ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTGTCAAGGCAACTGGGGAGGTCCTCTTCATACAGCAGCCTCAGGTCCAAATCCACAAGAGAAGATCTATGGAATATTTGTGGAACAAAAATGGAAGAAGAAGAAGAAGAAGAAGATCATCAACAACAACAGCTTGAAAAGGTGAGGGGCAGTAATGTAATTATGTATGTTGGAAGCACAAGAAAAAAATATGTAATAAGTTCAAAGTTCTTGAGCCACCCTTTGGTAAATGCTCTGATTGATAAATCCAAATCCAAATCCAAATCCAAGTCTGAGGATTGTGAAGCCATTTCAGTGAGGTGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAACATCACTTTTGATTCTAATTTGGAGGAATTGGCTGATCTCTATGTCTTT

Protein sequence

MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

Homology

[Close]

BLAST of MS004616 vs. NCBI nr
Match: XP_022135446.1 (uncharacterized protein LOC111007398 [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLE 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM EEEEEEEDHQQQQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120
           KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELADLYVF 149
           DHLLWMLENSDPNITFDSNLEELADLYVF
Sbjct: 121 DHLLWMLENSDPNITFDSNLEELADLYVF 149

[Close]

BLAST of MS004616 vs. NCBI nr
Match: XP_038899559.1 (auxin-responsive protein SAUR78 [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 8.4e-54
Identity = 121/151 (80.13%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +CGTKMEEE+ E+  Q+QQLEK
Sbjct: 1   MKKINYLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCGTKMEEEDFEQ--QKQQLEK 60

Query: 61  VRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCE---AISVRCEVV 120
           V G++VI+YVGSTRK+Y ISSK+LSHPL+NALIDKSKSK    ++D E    ISVRCEVV
Sbjct: 61  VSGNDVILYVGSTRKRYAISSKYLSHPLLNALIDKSKSKKLLANDDDEEEDCISVRCEVV 120

Query: 121 LFDHLLWMLENSDPNITFDSNLEELADLYVF 149
           LFDHLLWMLENSDPNI+FDSNLEELA+LYVF
Sbjct: 121 LFDHLLWMLENSDPNISFDSNLEELAELYVF 148

[Close]

BLAST of MS004616 vs. NCBI nr
Match: XP_023536060.1 (auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-52
Identity = 116/153 (75.82%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQ--- 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   MEE EE E+H++++   
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCDRTMEEHEEREEHEEREEHE 60

Query: 61  -LEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSK-SKSKSKSEDCEAISVRCE 120
             EKV GSNVI+YVGSTRK+Y ISSK+LSHPL+NALIDKSK  K  ++ +D E ISVRCE
Sbjct: 61  GFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCE 120

Query: 121 VVLFDHLLWMLENSDPNITFDSNLEELADLYVF 149
           VVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Sbjct: 121 VVLFDHLLWMLENSDPNICFDSNLEELAELYVF 152

[Close]

BLAST of MS004616 vs. NCBI nr
Match: XP_011653970.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical protein Csa_012026 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 3.3e-50
Identity = 117/157 (74.52%), Postives = 128/157 (81.53%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C      E++EED +QQ  +K
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VC------EKQEEDFEQQIEQK 60

Query: 61  VRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK---------SKSKSEDCEAIS 120
           V GSNVI+YVGSTRKKY I+SK+LSHPL+NALIDKSKSK              +D E I 
Sbjct: 61  VSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDEECIL 120

Query: 121 VRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF 149
           VRCEVVLFDHLLWMLENSDPNITFDSNLEELA+LYVF
Sbjct: 121 VRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150

[Close]

BLAST of MS004616 vs. NCBI nr
Match: KAG7024703.1 (hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-48
Identity = 112/157 (71.34%), Postives = 128/157 (81.53%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQ----- 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   MEE EE E+ ++     
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCERTMEEHEEHEEREEHGEHE 60

Query: 61  --QQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSK--SKSKSKSEDCEAIS 120
             +  E+V GSNVI+YVGSTRK+Y ISSK+LSHPL+NALIDKSK    ++   +D + IS
Sbjct: 61  EREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCIS 120

Query: 121 VRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF 149
           VRCEVVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Sbjct: 121 VRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 156

[Close]

BLAST of MS004616 vs. ExPASy Swiss-Prot
Match: Q9LQI6 (Auxin-responsive protein SAUR77 OS=Arabidopsis thaliana OX=3702 GN=SAUR77 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 67  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWML 126
           ++YVG +R+ Y++SS  ++HPL   L+D+S S+   +  D E + V CEVVLF+HLLWML
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRS-SRFIEERHDQETVLVACEVVLFEHLLWML 105

Query: 127 ENS-----DPNITFDSNLEELADLYVF 149
           +NS     D +     ++EELA+ Y +
Sbjct: 106 KNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of MS004616 vs. ExPASy Swiss-Prot
Match: Q9C9E1 (Auxin-responsive protein SAUR78 OS=Arabidopsis thaliana OX=3702 GN=SAUR78 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 67  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWML 126
           ++YVG TR+ Y++    +SHPL   L+D+S S+S  +  +   I V CEVVLF+HLLWML
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDRE---IVVACEVVLFEHLLWML 104

Query: 127 ENSDPNITFDSNLEELADLYVF 149
           ++         ++EELA+ Y +
Sbjct: 105 KSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of MS004616 vs. ExPASy Swiss-Prot
Match: Q29PU2 (Auxin-responsive protein SAUR76 OS=Arabidopsis thaliana OX=3702 GN=SAUR76 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 27  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFL 86
           ++ KS  + L N   TK  +   + +H +        S  +  +YVG TR+ Y +SS  +
Sbjct: 9   MKLKSVLKKL-NSFNTKPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRRTYHVSSDVV 68

Query: 87  SHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAD 146
           SHPL   L   +       SED  +ISV CEVVLF+HLLWMLEN+D + +   ++ EL +
Sbjct: 69  SHPLFQQL---AAVDGGCGSED-GSISVSCEVVLFEHLLWMLENADADESRPESVYELVE 125

[Close]

BLAST of MS004616 vs. ExPASy TrEMBL
Match: A0A6J1C0S4 (uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007398 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLE 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM EEEEEEEDHQQQQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120
           KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELADLYVF 149
           DHLLWMLENSDPNITFDSNLEELADLYVF
Sbjct: 121 DHLLWMLENSDPNITFDSNLEELADLYVF 149

[Close]

BLAST of MS004616 vs. ExPASy TrEMBL
Match: A0A1S3B9J9 (uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 113/160 (70.62%), Postives = 127/160 (79.38%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C      E++EED +QQ  +K
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VC------EKQEEDFEQQFDQK 60

Query: 61  VRG-SNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK-----------SKSKSEDCE 120
           V G +NV++YVGSTRKKY I+SK+L HPL+NALIDKSKSK                +D +
Sbjct: 61  VSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGDDED 120

Query: 121 AISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF 149
            I VRCEVVLFDHLLWMLENSDPNITFDSNLEELA+LYVF
Sbjct: 121 CILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]

BLAST of MS004616 vs. ExPASy TrEMBL
Match: B9RI47 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.3e-38
Identity = 96/148 (64.86%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW       + +EE+E+HQ      
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWG------DHKEEDEEHQS----- 60

Query: 61  VRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFD 120
                  ++VGSTRK+YVISSK+LSHPLVNALI KSK +        E + V+CEVVLFD
Sbjct: 61  ------TLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQGE-----EILVVKCEVVLFD 120

Query: 121 HLLWMLENSDPNITFDSNLEELADLYVF 149
           HLLWMLEN+DPN++FDS LEELA+LYVF
Sbjct: 121 HLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of MS004616 vs. ExPASy TrEMBL
Match: A0A2C9UHW2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.7e-37
Identity = 96/149 (64.43%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRED+W   GT    ++E+E+H+      
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDVW---GTDKLHQDEQEEHE------ 60

Query: 61  VRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFD 120
                  ++VGSTRK+YVI+SK+LSHPLVNALI+KSK K        E + V+CEVVLFD
Sbjct: 61  ------TIFVGSTRKRYVINSKYLSHPLVNALIEKSKQKHGE-----EVLVVKCEVVLFD 120

Query: 121 HLLWMLENSDP-NITFDSNLEELADLYVF 149
           HLLWMLEN+DP N++ DS LEELADLYVF
Sbjct: 121 HLLWMLENADPTNLSLDS-LEELADLYVF 128

[Close]

BLAST of MS004616 vs. ExPASy TrEMBL
Match: A0A3N7FTM7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G143400 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 95/148 (64.19%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEK 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW       + ++E E+H+      
Sbjct: 26  MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWG------DHKQENENHE------ 85

Query: 61  VRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFD 120
                  ++VGSTRK+YVISSK+LSHPLVNALI+KS+ K     ED   + V+CEVV FD
Sbjct: 86  ------TIFVGSTRKRYVISSKYLSHPLVNALIEKSRQK---PGED-NILVVKCEVVFFD 145

Query: 121 HLLWMLENSDPNITFDSNLEELADLYVF 149
           HLLWMLEN+DPN +FDS LEELADLY+F
Sbjct: 146 HLLWMLENADPNASFDS-LEELADLYMF 150

[Close]

BLAST of MS004616 vs. TAIR 10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-21
Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 3   KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVR 62
           ++  +LR+CKS+S QLGRS SY+SLRSKS R D               +DH Q   +   
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRD--------------PQDHLQDVDQSPT 65

Query: 63  GSNV-IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEA-ISVRCEVVLFD 122
            S    + VG T+K Y+IS K L HPL+NAL++K +   +  +ED    I+V+CEVVLFD
Sbjct: 66  PSMYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFD 125

Query: 123 HLLWMLENSDPNITFDSNLEELADLYV 148
           HLLWMLE  D  +    +L++ A LY+
Sbjct: 126 HLLWMLEYGD-EVHILESLDDFAHLYL 137

[Close]

BLAST of MS004616 vs. TAIR 10
Match: AT1G17345.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 67  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWML 126
           ++YVG +R+ Y++SS  ++HPL   L+D+S S+   +  D E + V CEVVLF+HLLWML
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRS-SRFIEERHDQETVLVACEVVLFEHLLWML 105

Query: 127 ENS-----DPNITFDSNLEELADLYVF 149
           +NS     D +     ++EELA+ Y +
Sbjct: 106 KNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of MS004616 vs. TAIR 10
Match: AT1G72430.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 67  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWML 126
           ++YVG TR+ Y++    +SHPL   L+D+S S+S  +  +   I V CEVVLF+HLLWML
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDRE---IVVACEVVLFEHLLWML 104

Query: 127 ENSDPNITFDSNLEELADLYVF 149
           ++         ++EELA+ Y +
Sbjct: 105 KSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of MS004616 vs. TAIR 10
Match: AT5G20820.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-10
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 27  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFL 86
           ++ KS  + L N   TK  +   + +H +        S  +  +YVG TR+ Y +SS  +
Sbjct: 9   MKLKSVLKKL-NSFNTKPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRRTYHVSSDVV 68

Query: 87  SHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAD 146
           SHPL   L   +       SED  +ISV CEVVLF+HLLWMLEN+D + +   ++ EL +
Sbjct: 69  SHPLFQQL---AAVDGGCGSED-GSISVSCEVVLFEHLLWMLENADADESRPESVYELVE 125

[Close]

BLAST of MS004616 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 42.4 bits (98), Expect = 3.8e-04
Identity = 26/96 (27.08%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 43  KMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKS 102
           K  + +EE     +    V   N+ +YVG   ++++I + +LSH L   L++  K++ + 
Sbjct: 61  KNGDSDEETCQSPEPPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLE--KAEEEF 120

Query: 103 KSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSN 139
             +   A+++ CEV  F +LL  +EN+  ++  D N
Sbjct: 121 GFDQSGALTIPCEVETFKYLLKCMENNLKDLHPDDN 154

The following BLAST results are available for this feature:

BLAST of MS004616 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135446.1	1.2e-71	99.33	uncharacterized protein LOC111007398 [Momordica charantia]	[more]
XP_038899559.1	8.4e-54	80.13	auxin-responsive protein SAUR78 [Benincasa hispida]	[more]
XP_023536060.1	4.6e-52	75.82	auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]	[more]
XP_011653970.1	3.3e-50	74.52	auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical pro...	[more]
KAG7024703.1	1.8e-48	71.34	hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS004616 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQI6	3.7e-12	42.53	Auxin-responsive protein SAUR77 OS=Arabidopsis thaliana OX=3702 GN=SAUR77 PE=1 S...	[more]
Q9C9E1	2.4e-11	41.46	Auxin-responsive protein SAUR78 OS=Arabidopsis thaliana OX=3702 GN=SAUR78 PE=1 S...	[more]
Q29PU2	1.1e-08	36.89	Auxin-responsive protein SAUR76 OS=Arabidopsis thaliana OX=3702 GN=SAUR76 PE=1 S...	[more]

BLAST of MS004616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0S4	5.6e-72	99.33	uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A1S3B9J9	1.7e-47	70.63	uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=...	[more]
B9RI47	5.3e-38	64.86	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1	[more]
A0A2C9UHW2	7.7e-37	64.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=3 SV=...	[more]
A0A3N7FTM7	1.7e-36	64.19	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G143400 PE=3 ...	[more]

BLAST of MS004616 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12955.1	4.5e-21	43.54	SAUR-like auxin-responsive protein family	[more]
AT1G17345.1	2.6e-13	42.53	SAUR-like auxin-responsive protein family	[more]
AT1G72430.1	1.7e-12	41.46	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	7.9e-10	36.89	SAUR-like auxin-responsive protein family	[more]
AT5G20810.1	3.8e-04	27.08	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	PANTHER	PTHR31374:SF195	EXPRESSED PROTEIN	coord: 3..148
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 3..148
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 31..126 e-value: 2.2E-14 score: 53.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004616.1	MS004616.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin