MS004610 (gene) Bitter gourd (TR) v1

Overview


Name	MS004610
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	scaffold995: 670789 .. 671463 (+)
RNA-Seq Expression	MS004610
Synteny	MS004610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCAGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCCATGCTTACCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTTCAGGCAGGATTATATTTACTTGGTTTGTCTTATTAGCTTTATCATATAAAATAGAATTTTGTACTTCAACTAGTTATAAATTTACAAATATAGCTTTGAAGATTTTGTCACTTGCTAGGTTTAGGGGAAGTTTATGCATCATACATGATATTCTATCATAATTACCTTTTTTCTTGTATTGGATGAAAAAAATGCAGCTTCTGAGTCTCATGGTTTTTTCAACAGTGTGAAAAGTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

mRNA sequence

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCAGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCCATGCTTACCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

Coding sequence (CDS)

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCAGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCCATGCTTACCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

Protein sequence

MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

Homology

[Close]

BLAST of MS004610 vs. NCBI nr
Match: XP_022143160.1 (uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143175.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143183.1 uncharacterized protein LOC111013092 [Momordica charantia])

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-62
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPEGELNQSANQDSNVSVELEHSVSQNGLL+EGNGIANMNLGNADTVAKGLSSML+NI
Sbjct: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAPFPFIMQHASRISNVRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRLT---SELDQLLEDAPFPFIMQHASRISNVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGNL 145
           LNSILRSIQRRVDNIDRAIAMGNL
Sbjct: 121 LNSILRSIQRRVDNIDRAIAMGNL 141

[Close]

BLAST of MS004610 vs. NCBI nr
Match: XP_023535159.1 (uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535161.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535162.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 3.9e-48
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPE  L+  AN+DSNVSVELE S+S+NG LQE N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSNVSVELETSISRNGGLQEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I +   ELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITI---ELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 144
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MS004610 vs. NCBI nr
Match: XP_022976873.1 (uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976875.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976876.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976877.1 uncharacterized protein LOC111477110 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 5.7e-47
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 144
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MS004610 vs. NCBI nr
Match: XP_038897519.1 (uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 113/145 (77.93%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTN 60
           MHSPE  + + SAN++SNV  ELE S+S NG LQEGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 145
           SLNSILR+IQRRVDNIDRAI+MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAISMGNL 142

[Close]

BLAST of MS004610 vs. NCBI nr
Match: XP_038897517.1 (uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 113/145 (77.93%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTN 60
           MHSPE  + + SAN++SNV  ELE S+S NG LQEGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 145
           SLNSILR+IQRRVDNIDRAI+MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAISMGNL 142

[Close]

BLAST of MS004610 vs. ExPASy TrEMBL
Match: A0A6J1CN29 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica charantia OX=3673 GN=LOC111013092 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPEGELNQSANQDSNVSVELEHSVSQNGLL+EGNGIANMNLGNADTVAKGLSSML+NI
Sbjct: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAPFPFIMQHASRISNVRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRLT---SELDQLLEDAPFPFIMQHASRISNVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGNL 145
           LNSILRSIQRRVDNIDRAIAMGNL
Sbjct: 121 LNSILRSIQRRVDNIDRAIAMGNL 141

[Close]

BLAST of MS004610 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 144
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MS004610 vs. ExPASy TrEMBL
Match: A0A6J1F9C2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 111/147 (75.51%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLD----LIVLTLTELDQLLEDAPFPFIMQHASRISNVRK 120
           IRDFDSKADDTLKSQSQLSSSLD    +I  T TELDQLLE APFPFIMQHASRIS+VRK
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTVITSTFTELDQLLEAAPFPFIMQHASRISSVRK 120

Query: 121 RVLSLNSILRSIQRRVDNIDRAIAMGN 144
           RVLSLNSIL SIQRR+DNIDRAI+MGN
Sbjct: 121 RVLSLNSILGSIQRRLDNIDRAISMGN 147

[Close]

BLAST of MS004610 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 110/143 (76.92%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNI 60
           MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLE APFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEAAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 144
           LNSIL SIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILGSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MS004610 vs. ExPASy TrEMBL
Match: A0A1S3BAU4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.0e-45
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTN 60
           MH PE  + + SAN+DSNVS ELE S+S  G LQEGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQ+ LSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 145
           SLNSILR+IQRRVDNIDRAI MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAITMGNL 142

[Close]

BLAST of MS004610 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-25
Identity = 65/133 (48.87%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 8   LNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSK 67
           + Q ++ D   S +   S  Q+   ++G        G  + +A+GLS+ML ++I+DFDSK
Sbjct: 1   MEQLSDSDHRDSADATTSSCQSTTAEDG-----QCGGGGEAMARGLSAMLESVIKDFDSK 60

Query: 68  ADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRS 127
           A DTL SQ +LS SLD +V    ELDQLLE+AP PFI+QHASRIS+V++RV SLN +L+S
Sbjct: 61  ALDTLNSQDELSGSLDRLV---QELDQLLENAPLPFIVQHASRISSVKQRVSSLNLVLKS 120

Query: 128 IQRRVDNIDRAIA 141
           +QRR+DNID  ++
Sbjct: 121 VQRRIDNIDHMLS 125

The following BLAST results are available for this feature:

BLAST of MS004610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143160.1	8.1e-62	93.75	uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncha...	[more]
XP_023535159.1	3.9e-48	79.02	uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160....	[more]
XP_022976873.1	5.7e-47	77.62	uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharac...	[more]
XP_038897519.1	1.3e-46	77.93	uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]	[more]
XP_038897517.1	1.3e-46	77.93	uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]	[more]

BLAST of MS004610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN29	3.9e-62	93.75	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica chara...	[more]
A0A6J1IKP2	2.7e-47	77.62	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1F9C2	1.8e-46	75.51	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FEP4	5.2e-46	76.92	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A1S3BAU4	2.0e-45	76.55	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX...	[more]

BLAST of MS004610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	8.5e-25	48.87	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 49..135 e-value: 6.7E-17 score: 61.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 5..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004610.1	MS004610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex