MS004337 (gene) Bitter gourd (TR) v1

Overview
NameMS004337
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold92: 1949599 .. 1949748 (-)
RNA-Seq ExpressionMS004337
SyntenyMS004337
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACGTGGGAAGAGAAAGATCAGGAGCTTATTCCGGCGGGTGAGGGCGGAGATCAGGCGGCAGATGGCGGCGGGGTCCCACCGGAAGGCGCGCCTCAGCTTCCACTACGACCCTTTGAGTTATGCTTTGAACTTCGACAATGCCAATTCT

mRNA sequence

GCACGTGGGAAGAGAAAGATCAGGAGCTTATTCCGGCGGGTGAGGGCGGAGATCAGGCGGCAGATGGCGGCGGGGTCCCACCGGAAGGCGCGCCTCAGCTTCCACTACGACCCTTTGAGTTATGCTTTGAACTTCGACAATGCCAATTCT

Coding sequence (CDS)

GCACGTGGGAAGAGAAAGATCAGGAGCTTATTCCGGCGGGTGAGGGCGGAGATCAGGCGGCAGATGGCGGCGGGGTCCCACCGGAAGGCGCGCCTCAGCTTCCACTACGACCCTTTGAGTTATGCTTTGAACTTCGACAATGCCAATTCT

Protein sequence

ARGKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNANS
Homology
BLAST of MS004337 vs. NCBI nr
Match: OMO62307.1 (hypothetical protein COLO4_33132 [Corchorus olitorius])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK RSLF R+RAEIRRQM A    K + SF YDP SYALNFDN N
Sbjct: 17 GKRKFRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGN 63

BLAST of MS004337 vs. NCBI nr
Match: OMO98223.1 (hypothetical protein CCACVL1_04290 [Corchorus capsularis])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK RSLF R+RAEIRRQM A    K + SF YDP SYALNFDN N
Sbjct: 17 GKRKFRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGN 63

BLAST of MS004337 vs. NCBI nr
Match: KAG5221957.1 (hypothetical protein IMY05_C4078000200 [Salix suchowensis])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK+RSLF RVRAEIRRQ+   S  K RLSFHYDP SYALNFD+ N
Sbjct: 17 GKRKLRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGN 62

BLAST of MS004337 vs. NCBI nr
Match: KAG5241003.1 (pyruvate carboxylase [Salix suchowensis])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK+RSLF RVRAEIRRQ+   S  K RLSFHYDP SYALNFD+ N
Sbjct: 54 GKRKLRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGN 99

BLAST of MS004337 vs. NCBI nr
Match: KAF9678110.1 (hypothetical protein SADUNF_Sadunf07G0000900 [Salix dunnii])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3   GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
           GKRK+RSLF RVRAEIRRQ+   S  K RLSFHYDP SYALNFD+ N
Sbjct: 90  GKRKLRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGN 135

BLAST of MS004337 vs. ExPASy TrEMBL
Match: A0A1R3JTM5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.6e-08
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK RSLF R+RAEIRRQM A    K + SF YDP SYALNFDN N
Sbjct: 17 GKRKFRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGN 63

BLAST of MS004337 vs. ExPASy TrEMBL
Match: A0A1R3GW93 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.6e-08
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK RSLF R+RAEIRRQM A    K + SF YDP SYALNFDN N
Sbjct: 17 GKRKFRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGN 63

BLAST of MS004337 vs. ExPASy TrEMBL
Match: A0A6N2LDV4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK+RSLF RVRAEIRRQ+   S  K RLSFHYDP SYALNFD+ N
Sbjct: 17 GKRKLRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGN 62

BLAST of MS004337 vs. ExPASy TrEMBL
Match: A0A061E9R3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 3  GKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          GKRK RSLF RVRAEIRRQ+ A +  K R SFHYDP SYALNFDN N
Sbjct: 40 GKRKFRSLFWRVRAEIRRQVKART-SKQRFSFHYDPFSYALNFDNGN 85

BLAST of MS004337 vs. ExPASy TrEMBL
Match: A0A7N2KK75 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 2  RGKRKIRSLFRRVRAEIRRQMAAGSHRKARLSFHYDPLSYALNFDNAN 50
          RGKRK+RSLF RVRAE+RRQ+ + + ++ + SF+YDP SYALNFDN N
Sbjct: 16 RGKRKLRSLFWRVRAEVRRQVKSRAMKQKKFSFNYDPFSYALNFDNGN 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO62307.12.0e-0770.21hypothetical protein COLO4_33132 [Corchorus olitorius][more]
OMO98223.12.0e-0770.21hypothetical protein CCACVL1_04290 [Corchorus capsularis][more]
KAG5221957.12.6e-0774.47hypothetical protein IMY05_C4078000200 [Salix suchowensis][more]
KAG5241003.12.6e-0774.47pyruvate carboxylase [Salix suchowensis][more]
KAF9678110.12.6e-0774.47hypothetical protein SADUNF_Sadunf07G0000900 [Salix dunnii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3JTM59.6e-0870.21Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 ... [more]
A0A1R3GW939.6e-0870.21Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1[more]
A0A6N2LDV41.3e-0774.47Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=... [more]
A0A061E9R31.6e-0774.47Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1[more]
A0A7N2KK751.6e-0764.58Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34538EXPRESSED PROTEINcoord: 4..49
NoneNo IPR availablePANTHERPTHR34538:SF13OS07G0573000 PROTEINcoord: 4..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004337.1MS004337.1mRNA