MS004150 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTCCAACTGCTACGTGTTTTTCTCAGATTTCCAAACCTTCCCCAATTTTCTCCATTCACACGGTATTATTCTTCTTATTTGTTCTGATTCCTATTCCGATTCAAGTTTCTGTTCTTATTCGTGTTAATTTGTTCTTGTTCTGGTTCTGGAGTATTCACACGAACTATTTGTTCCCGACTCACGTGCACTTTAATATTATACTTTTTCAAGCTTCGGGTTCTCTTTTAGGACAGATTCTTCAGGAACTCGTGGTTGAGTTCTTCTGACTGTGACTTTGAGGTGCTTTAGACAAATAAGGAAAGGAAATGAGGAAAACGGAACTTCAAAATCCTTCCAAATCGCCATGTTCATTAGTTTCGGTTTGGAAAAGCACAATATGCTCCGATTGAAAAAAGAGCAACATAATTTGGAATTGTAATTCCAAAATAAACCAATTCCCAGAGAAGATAAAATTACCATTAGAACTTTGAAATATTTTAGACTTGACCATTTTTGAGTTTGAGTTCAGCTGTTGTGTTGTTGTTGTTCTTTTATTGTCCTGTCTCCTATTTCAATTGGTGGCTTACTCGGCTGAGTCATGAACATTGATCGAGAAAGAGAGAGTGGGGAAGGGGGGTTAGTAGAGAAAAAATTACTGAGAGTTCATGGAGAATCAACTCACTCCATTAATATTTCTCCAAGATCGGTAGTTGTGGTCGAGGACATCAACATGGTCAAGCCATTATTTCTGTCTTAGGTCTCTTATTCCTTTACTGTTCCTAGAAACAAAGTTATTATTCCTCTCAATTCAGCATGACCATATTGTATCTATTCATCATTTGTTCGGCATTCTTCTAGCTTTATTAAAAAAAACTGATTGATATAGAAAATCAGAATAAACTAAAGATGGTTAAAAAATACTTTTGGTACCTGTACTTTAATCTAAGTAACGATGTGAACTTTAGTTTATAACGATTTGGTCCTTGTACTTCAAATTGGTAACAATTTAGTCCCTAAACTTTAGTAGGTAACAATTTAGTCTATCTAGTTTAAAGTTTGTAATGATTTAGTCTTTGCTGTGACAATTGTTGTTAAGATTTAATAAAGTTTCTTATACGTGTAGATTGATAAATTGATGAGGAATCAAATTTTTTTATAAATTACAAATACTGAATCGTTATATTATAAAAATCACACTTAATTGTTACGAATTTTAAATTATAAGGACAATACATACTGAAGTGGCTAAATTGTTACCAAAAGTACAAAGATTAGATCATTAAGAACTAAAATTTAGGAGCACAATTGTTACTTCAGTAAAATTACAGGGACTAAATGTATTTTTTTAACCAATAAAAATTTGTTATGTCTATAGAATATAAGAAAAATAGGAAACGATATATATCCTTTTGATATCCACGAGTGTTTGAGCCGGATTGAGTGCATCTTGACTAATATCATGGAACAACCATTTGACCCTACTATATTTAGTTTCCAAAGATTTTAACATCTTAGGTAGGTGACTACTATAGGGTATGAAGAAAACTGTCCTTGAACGTAGCTGTATGAGATTACATTATCCGTAGCATTTTAAATAAAATTATCTTTCAGATGTAGCGGTAGAGAAGAAGAAAACGAAGGTGTAGCCCTTGCTTTTGTTCATAAAAAAATGGTCTTAACTCTTAAGTAGTGGTTTCAAAGATCACCTAGCTTTATGGTTATGGTTGGAATATATTATCTCTGTTTTGTCTTCACACACAGCATCTCACTCTTCATATTATAATTTTAGTAAACAAGAGTAGATATAACTTCTTTCAAATAAAATGGATTTGTGCAGATATATAAGCTTGCAGCTGAACGCAAAGTCATATGCTGCTCTACTTTGCAGGAATCATCTACTCCAACAGGTTAGTTGCTGGCAAGTTTTTCAAACTACATCCACTGAGAGATAACAGAATGATATTTTGTCAATCTTTTTTCTCTTTAAAATGAAATGGGTTATGCTACGGTACATTTGTTTCTTTCTGTTGTATTTTAATGTCATTTTATGTATGGCATCTGCTAAAGTAGAAGCTTGTTGTATCAGTTGCTGCTGAGCCGAAGGAGATAAAAGTGGTCGAGAAGGAAGCTCCAGCAAAGACCAAACCGCCAGCAAAAGCGCCAGTCAAGGCACTGCCGGAGTTAATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAGGCTGATGTCTCCGATATCGAGCTATCGTTCCAAGACGACAGAGTAAGCTTCTCCGATCTGAATTCTTGTTCACTAATAAACTCTTGGAGCTTGAGCTCATTGAACTTGGACTCAAAATGGCAGTTGGATGGCTCGTTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTCAAATTCTTAGACAATGTATTTCCTTTGTCATTGTCATTTCTTCCCAACTGCAATGTTGGTTGAGTTCGATTAAATACAAGAAGAATGTATGAATACAAGAACAAAATATCTTCAATTGTTGATTATCTTGATGCCAAGTCGGTACTCGTCTGTCTGTCGCTGAAAAGGAAAAGAAAATAAAATCGTAACTCGATGAGTAATCTATTTCAATGGTTTAATCATGAACAGGTCCAAAAGGGTTTTCACTATCTTCATATGGCTATGGAGGAAGCTCTGTTGAGCCATTTCTGGTTGATGAGAAGAAAATTACAGCAAAACATGTAGTCTTTTGGATTGAGAAGCGTTTGGCTGCTCAAGGAATTATTCCAGTCTGGAAAGAC ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTCCAACTGCTACGTGTTTTTCTCAGATTTCCAAACCTTCCCCAATTTTCTCCATTCACACGATATATAAGCTTGCAGCTGAACGCAAAGTCATATGCTGCTCTACTTTGCAGGAATCATCTACTCCAACAGTTGCTGCTGAGCCGAAGGAGATAAAAGTGGTCGAGAAGGAAGCTCCAGCAAAGACCAAACCGCCAGCAAAAGCGCCAGTCAAGGCACTGCCGGAGTTAATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAGGCTGATGTCTCCGATATCGAGCTATCGTTCCAAGACGACAGATTGGATGGCTCGTTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCTTCATATGGCTATGGAGGAAGCTCTGTTGAGCCATTTCTGGTTGATGAGAAGAAAATTACAGCAAAACATGTAGTCTTTTGGATTGAGAAGCGTTTGGCTGCTCAAGGAATTATTCCAGTCTGGAAAGAC ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTCCAACTGCTACGTGTTTTTCTCAGATTTCCAAACCTTCCCCAATTTTCTCCATTCACACGATATATAAGCTTGCAGCTGAACGCAAAGTCATATGCTGCTCTACTTTGCAGGAATCATCTACTCCAACAGTTGCTGCTGAGCCGAAGGAGATAAAAGTGGTCGAGAAGGAAGCTCCAGCAAAGACCAAACCGCCAGCAAAAGCGCCAGTCAAGGCACTGCCGGAGTTAATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAGGCTGATGTCTCCGATATCGAGCTATCGTTCCAAGACGACAGATTGGATGGCTCGTTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCTTCATATGGCTATGGAGGAAGCTCTGTTGAGCCATTTCTGGTTGATGAGAAGAAAATTACAGCAAAACATGTAGTCTTTTGGATTGAGAAGCGTTTGGCTGCTCAAGGAATTATTCCAGTCTGGAAAGAC MAMILKGGGGIGVPTATCFSQISKPSPIFSIHTIYKLAAERKVICCSTLQESSTPTVAAEPKEIKVVEKEAPAKTKPPAKAPVKALPELMEEDVIPSLKAILEAQADVSDIELSFQDDRLDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGYGGSSVEPFLVDEKKITAKHVVFWIEKRLAAQGIIPVWKD Homology
BLAST of MS004150 vs. NCBI nr
Match: XP_022150480.1 (uncharacterized protein LOC111018617 [Momordica charantia]) HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101 Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of MS004150 vs. NCBI nr
Match: XP_022986445.1 (uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharacterized protein LOC111484155 [Cucurbita maxima]) HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89 Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0
BLAST of MS004150 vs. NCBI nr
Match: XP_022956513.1 (uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 uncharacterized protein LOC111800345 [Cucurbita pepo subsp. pepo] >KAG7032019.1 hypothetical protein SDJN02_06061 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89 Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0
BLAST of MS004150 vs. NCBI nr
Match: XP_038891519.1 (uncharacterized protein LOC120080914 isoform X1 [Benincasa hispida]) HSP 1 Score: 331.6 bits (849), Expect = 4.4e-87 Identity = 170/194 (87.63%), Postives = 180/194 (92.78%), Query Frame = 0
BLAST of MS004150 vs. NCBI nr
Match: KAG6601225.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86 Identity = 166/189 (87.83%), Postives = 178/189 (94.18%), Query Frame = 0
BLAST of MS004150 vs. ExPASy TrEMBL
Match: A0A6J1D8K8 (uncharacterized protein LOC111018617 OS=Momordica charantia OX=3673 GN=LOC111018617 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 6.8e-102 Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of MS004150 vs. ExPASy TrEMBL
Match: A0A6J1JE31 (uncharacterized protein LOC111484155 OS=Cucurbita maxima OX=3661 GN=LOC111484155 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90 Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0
BLAST of MS004150 vs. ExPASy TrEMBL
Match: A0A6J1GX25 (uncharacterized protein LOC111458230 OS=Cucurbita moschata OX=3662 GN=LOC111458230 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90 Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0
BLAST of MS004150 vs. ExPASy TrEMBL
Match: A0A0A0KUS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614630 PE=4 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 6.8e-86 Identity = 167/194 (86.08%), Postives = 177/194 (91.24%), Query Frame = 0
BLAST of MS004150 vs. ExPASy TrEMBL
Match: A0A5A7SZ21 (DUF2996 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001950 PE=4 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 6.4e-84 Identity = 167/195 (85.64%), Postives = 178/195 (91.28%), Query Frame = 0
BLAST of MS004150 vs. TAIR 10
Match: AT2G04039.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). ) HSP 1 Score: 183.3 bits (464), Expect = 1.8e-46 Identity = 111/197 (56.35%), Postives = 135/197 (68.53%), Query Frame = 0
BLAST of MS004150 vs. TAIR 10
Match: AT2G04039.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 157 Blast hits to 157 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). ) HSP 1 Score: 169.5 bits (428), Expect = 2.7e-42 Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = 0
BLAST of MS004150 vs. TAIR 10
Match: AT2G04039.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22 Identity = 73/149 (48.99%), Postives = 92/149 (61.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|