MS003470 (gene) Bitter gourd (TR) v1

Overview


Name	MS003470
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Actin-related protein 2/3 complex subunit 5
Location	scaffold234: 3006368 .. 3008412 (-)
RNA-Seq Expression	MS003470
Synteny	MS003470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGCAGCTGAATTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTAACGAATTCTCTACCTTCTCTTTGATTTATAGGATTTAAATTTATGTAGCTCCTTCTTCTGACTTTCCCTTTTAATAATTGATAATGCTCAATTAGTCAATTTTCGATTCGTTAAGGTCTAGGCCAGTGGAAGCTCTAAAAACTGCTCTTGAAGGTTCGCCTCCGAATACCCGAGATGAGCGCTGCAAGGTATCCTTTCGTCCATTTTTTTTCGTCTATCACTTTGATTTCTGATCCCTCGTGCTTTGTTCAGATGTAATGGCGGTGAAGAATAGATATTAAATTTTTTCTTCTGTTCTATATCATGATTTTTCCTTGCGATTTTATCTGATGATTGATTATTGTTGTTGTTATTAATATTTAATTTGTGGTTAATCCTATAAGTTTGAAGGCAATTACTGGAGAGTCTCTGTTACTGGATGATAATCATTTTTCAATTTTATGCTTTTCCTACATTTTCTCAATGATGGGGCCAATTAGAACTTTCTGGGTATTATCTCAATGATGGGGCCAATTATATCTGTTGGAAGGCTTGCTGTTTTCTTTCATGTTTATGTTTTGTCGGTCTGCTTAACGTGGCAGGATGAATAAATCTGATGTGATTATTTGGACTTGTGCAGTCAGCAAATTGGATTGCGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTAAGTTTGTGTGGTATTTAGCTGCTAAAATATCCATTCTTATTGCTTCTACTTTTCTTAGCAGGAGGGAGTTTAAAGTTGGCCATTCTAATTGTTTTTCTTTTTAATAAATTCCAACTTTACTTTCTGATATTGTTCTTCTGCCTCTGATCCTACTATGAGTTATGCAATTAAACATTCTGATTTTATGTCAAACTCATCAGATTTCTACTGCTAGATATGCCAATTTCAATAGGCCATGTGTTGCATTTAGTTACTTGGAACGTTGGATGATTGGTTGGCTGATATGAATTTGTTTTTGTCCCATGGAGTCTTTGTAAAAGTGGAAATCTCCATAACCATTTAGCTAGAAATATCCCATCACATCTTCTAAGTTAGCAAGTCCCAACCAACCTTTCTCCCATTAGGCTGCACCACTTTGAGGGGATGAGGAGACACTCGATTCGGGGCTAAGGAAGTTGCAATTAGATCTACCAGTAGTAAAAGTCATTTTCTAAATGAGGAGTCAAAAGGAAGGTTTCTCTCCTGAGTATACGGTCCTTGCTTGTGTTTTTACACAAGAATGACTAGAAAAGTGAAGTGTCAAAGAAAATAAAGCACTTCCCATGGTACTTGCTTGTGCATTTGCCAAGAAAGATTTGAGACGGATCCAAATTGGGTTCTTATTTCATCAGATTGTAGCTTGTGACTTCTTGATGGAAAAAATTACTCCTGCCAATGGGCTGCACTACTTTATTCCACTGGACAAGATAAATTCTGCCTCTACTTTCCTAGTTCCCCCCAAGAAGTCCCTCACCTTTTTTTCCAGAATTTTGCTGATCTGTTAGGAATTCTGAACACCTATAAGAAATCAGCTGAGCATGATGAAGCAATCGGTTGCTAAAATGAATAGAAAGGGGAGAAAAGATTTCCTTGTCTCACTCGGGCAAGGGTTTTCCTGGCTGATGCTAGTGATGATATAATCACTATCTTCCAAAATACAACCATTAATTCACCCTCCTTCAACAAGCCCCAAATCTGGGTGCTGTTTTCTTGTTGTTTCTTGGTAAGGACTTTTGCCAAAACGTGAGCATTGATATGTATACTTACAGGTACTTGTACAGAGGATTGTCAACTGGTGATCGTCCCACATGTGATCAGTGTCTTAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTGGGTTGCATTCTTCGTTCCCTTGCAGATACTATCAATACAGTT

mRNA sequence

ATGGCGGCTGCAGCTGAATTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAGGCCAGTGGAAGCTCTAAAAACTGCTCTTGAAGGTTCGCCTCCGAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGCGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGATTGTCAACTGGTGATCGTCCCACATGTGATCAGTGTCTTAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTGGGTTGCATTCTTCGTTCCCTTGCAGATACTATCAATACAGTT

Coding sequence (CDS)

ATGGCGGCTGCAGCTGAATTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAGGCCAGTGGAAGCTCTAAAAACTGCTCTTGAAGGTTCGCCTCCGAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGCGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGATTGTCAACTGGTGATCGTCCCACATGTGATCAGTGTCTTAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTGGGTTGCATTCTTCGTTCCCTTGCAGATACTATCAATACAGTT

Protein sequence

MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

Homology

[Close]

BLAST of MS003470 vs. NCBI nr
Match: XP_022133485.1 (actin-related protein 2/3 complex subunit 5A [Momordica charantia])

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MS003470 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 264.6 bits (675), Expect = 4.6e-67
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MS003470 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MS003470 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MS003470 vs. NCBI nr
Match: XP_015889484.1 (actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MS003470 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 5.1e-61
Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 5   AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAV 64
           AEFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWI V
Sbjct: 2   AEFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVV 61

Query: 65  HRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCI 124
           HRALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCI
Sbjct: 62  HRALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCI 121

Query: 125 LRSLADTINTV 136
           LR L DTINTV
Sbjct: 122 LRCLTDTINTV 132

[Close]

BLAST of MS003470 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 107/135 (79.26%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA AA FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of MS003470 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 33/105 (31.43%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDP 85
           +++SL++Q   + A ++AL  SP N++++  K      V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVL 146

[Close]

BLAST of MS003470 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K      V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of MS003470 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K      V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of MS003470 vs. ExPASy TrEMBL
Match: A0A6J1BVD6 (Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LOC111006055 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.1e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MS003470 vs. ExPASy TrEMBL
Match: A0A1S3B407 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.0e-67
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MS003470 vs. ExPASy TrEMBL
Match: A0A6P4A354 (Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC107424250 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MS003470 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MS003470 vs. ExPASy TrEMBL
Match: A0A0A0KD59 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MS003470 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 235.0 bits (598), Expect = 3.6e-62
Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 5   AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAV 64
           AEFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWI V
Sbjct: 2   AEFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVV 61

Query: 65  HRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCI 124
           HRALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCI
Sbjct: 62  HRALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCI 121

Query: 125 LRSLADTINTV 136
           LR L DTINTV
Sbjct: 122 LRCLTDTINTV 132

[Close]

BLAST of MS003470 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-57
Identity = 107/135 (79.26%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA AA FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

The following BLAST results are available for this feature:

BLAST of MS003470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133485.1	6.4e-69	100.00	actin-related protein 2/3 complex subunit 5A [Momordica charantia]	[more]
XP_038884940.1	4.6e-67	97.04	actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1...	[more]
XP_008441367.1	1.0e-66	96.30	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
XP_010089302.1	1.1e-65	94.81	actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin...	[more]
XP_015889484.1	1.1e-65	94.07	actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]	[more]

BLAST of MS003470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M117	5.1e-61	88.55	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
B3H6Y2	1.1e-55	79.26	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q6DE18	1.0e-08	31.43	Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5...	[more]
O15511	1.0e-08	32.38	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=...	[more]
Q5R516	1.0e-08	32.38	Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=...	[more]

BLAST of MS003470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVD6	3.1e-69	100.00	Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3B407	5.0e-67	96.30	Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A6P4A354	5.5e-66	94.07	Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC1...	[more]
W9R3V7	5.5e-66	94.81	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484...	[more]
A0A0A0KD59	7.2e-66	94.07	Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]

BLAST of MS003470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01710.1	3.6e-62	88.55	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]
AT5G65274.1	7.9e-57	79.26	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 10..131 e-value: 2.5E-22 score: 79.9
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 5..133
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	GENE3D	1.25.40.190		coord: 17..132 e-value: 5.4E-31 score: 109.2
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	SUPERFAMILY	69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 6..131
None	No IPR available	PANTHER	PTHR12644:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5	coord: 5..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003470.1	MS003470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005885	Arp2/3 protein complex