MS003334 (gene) Bitter gourd (TR) v1

Overview
NameMS003334
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncaffeoylshikimate esterase isoform X2
Locationscaffold234: 2197492 .. 2197635 (-)
RNA-Seq ExpressionMS003334
SyntenyMS003334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCGAGAAAGAAATTGCCTGGTATCAGTGATGAGTTGCAGAAGCTAGCCGATGCTAACATGGACGACGTGTCGGCGAGACGCCGAGCGAGGGAGGCGTTTAAAGGAATTCAGCTCGGAATTGATCACATGCTGTTCAAG

mRNA sequence

ATGGCGCCGAGAAAGAAATTGCCTGGTATCAGTGATGAGTTGCAGAAGCTAGCCGATGCTAACATGGACGACGTGTCGGCGAGACGCCGAGCGAGGGAGGCGTTTAAAGGAATTCAGCTCGGAATTGATCACATGCTGTTCAAG

Coding sequence (CDS)

ATGGCGCCGAGAAAGAAATTGCCTGGTATCAGTGATGAGTTGCAGAAGCTAGCCGATGCTAACATGGACGACGTGTCGGCGAGACGCCGAGCGAGGGAGGCGTTTAAAGGAATTCAGCTCGGAATTGATCACATGCTGTTCAAG

Protein sequence

MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK
Homology
BLAST of MS003334 vs. NCBI nr
Match: XP_022134486.1 (caffeoylshikimate esterase isoform X1 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK
Sbjct: 51 MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 98

BLAST of MS003334 vs. NCBI nr
Match: XP_022134487.1 (caffeoylshikimate esterase isoform X2 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK
Sbjct: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 48

BLAST of MS003334 vs. NCBI nr
Match: XP_008459474.1 (PREDICTED: caffeoylshikimate esterase isoform X2 [Cucumis melo] >XP_016902451.1 PREDICTED: caffeoylshikimate esterase isoform X2 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 1  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 48

BLAST of MS003334 vs. NCBI nr
Match: XP_008459475.1 (PREDICTED: caffeoylshikimate esterase isoform X3 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
           MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 58  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 105

BLAST of MS003334 vs. NCBI nr
Match: XP_008459473.1 (PREDICTED: caffeoylshikimate esterase isoform X1 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
           MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 58  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 105

BLAST of MS003334 vs. ExPASy TrEMBL
Match: A0A6J1BZQ9 (caffeoylshikimate esterase isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006719 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK
Sbjct: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 48

BLAST of MS003334 vs. ExPASy TrEMBL
Match: A0A6J1BXY1 (caffeoylshikimate esterase isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006719 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK
Sbjct: 51 MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 98

BLAST of MS003334 vs. ExPASy TrEMBL
Match: A0A1S4E2J5 (caffeoylshikimate esterase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498599 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-14
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1  MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 1  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 48

BLAST of MS003334 vs. ExPASy TrEMBL
Match: A0A1S3CBH4 (caffeoylshikimate esterase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498599 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-14
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
           MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 58  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 105

BLAST of MS003334 vs. ExPASy TrEMBL
Match: A0A1S3CAD1 (caffeoylshikimate esterase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498599 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-14
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MAPRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
           MAPRKKL G+ DELQKL DANMD V+ARRRAREAFKGIQLGIDH+LFK
Sbjct: 58  MAPRKKLQGVDDELQKLLDANMDGVAARRRAREAFKGIQLGIDHILFK 105

BLAST of MS003334 vs. TAIR 10
Match: AT1G77420.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 4.5e-07
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 2  APRKKLPGISDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          A R  + G+SDEL  +A  N+D   ARR AR AF  +QL +DH LFK
Sbjct: 39 AKRSPIDGVSDELNLIASQNLDQAPARRLARSAFVDLQLQLDHCLFK 85

BLAST of MS003334 vs. TAIR 10
Match: AT5G16120.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-05
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 11 SDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          ++EL++L + N+D+   RRR R++ K IQL +DH+LFK
Sbjct: 10 NEELRRLREVNIDEAPGRRRVRDSLKDIQLNLDHILFK 47

BLAST of MS003334 vs. TAIR 10
Match: AT5G16120.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-05
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 11 SDELQKLADANMDDVSARRRAREAFKGIQLGIDHMLFK 49
          ++EL++L + N+D+   RRR R++ K IQL +DH+LFK
Sbjct: 28 NEELRRLREVNIDEAPGRRRVRDSLKDIQLNLDHILFK 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134486.13.5e-17100.00caffeoylshikimate esterase isoform X1 [Momordica charantia][more]
XP_022134487.13.5e-17100.00caffeoylshikimate esterase isoform X2 [Momordica charantia][more]
XP_008459474.11.8e-1385.42PREDICTED: caffeoylshikimate esterase isoform X2 [Cucumis melo] >XP_016902451.1 ... [more]
XP_008459475.11.8e-1385.42PREDICTED: caffeoylshikimate esterase isoform X3 [Cucumis melo][more]
XP_008459473.11.8e-1385.42PREDICTED: caffeoylshikimate esterase isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BZQ91.7e-17100.00caffeoylshikimate esterase isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1BXY11.7e-17100.00caffeoylshikimate esterase isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A1S4E2J58.6e-1485.42caffeoylshikimate esterase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498599 PE... [more]
A0A1S3CBH48.6e-1485.42caffeoylshikimate esterase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498599 PE... [more]
A0A1S3CAD18.6e-1485.42caffeoylshikimate esterase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498599 PE... [more]
Match NameE-valueIdentityDescription
AT1G77420.14.5e-0751.06alpha/beta-Hydrolases superfamily protein [more]
AT5G16120.11.5e-0547.37alpha/beta-Hydrolases superfamily protein [more]
AT5G16120.21.5e-0547.37alpha/beta-Hydrolases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003334.1MS003334.1mRNA